BAC Information

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BAC

Clone NameB6Ng01-335D24
Chromosome18 (Build37)
Map Location 47,517,502 - 47,668,756
singlet/doubletdoublet
Overlap geneSema6a, LOC628477, 9130209A04Rik
Upstream geneLOC100042916, Mospd4, LOC100042204, Fem1c, Ticam2, Eif1a, LOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950, 4833403I15Rik, LOC666798, Gm949, LOC100042241, Commd10, EG628438, LOC667120
Downstream geneA730092B10, LOC383325, LOC100042982, LOC100042284, LOC100042301, EG433182, LOC383326, LOC100042323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335D24.bB6Ng01-335D24.g
ACCGA120540GA120541
length1,1361,116
definitionB6Ng01-335D24.b B6Ng01-335D24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,667,625 - 47,668,756)(47,517,502 - 47,518,621)
sequence
gaattcttggggccaaaggggaaaaatgtggagaaattctgactcatcta
caaggccataataataagtagaaaagaaatactattggtgtaaaatattc
tgagaaccatggggtttgagaatgagtttatctaaaacagcctgagagga
actgactggtagaactgaagaagctagccagtgagttctgggctgtgcag
cgtctcggcaggggaccaaagcaggctgctgccttgggactgaaagctag
tgtgatggggaagtgtcccttctctaagtcctaaaagtaaatgcattcat
tgatcaaatggtagaaatatttttaaatgttctaaaactcctctaatagt
ctataatcaccagagtggtgagaattttgttttgttttgttttgttttta
ccttttgttttgttttgtaaaacagggtctctctatgtaaccctggctat
cctgaaactctctgggtagatagggctggccttgaactcaaagagatcta
tcagcctctgcctccccaatgctcgagttataggcaggtgctactacttc
tggttgaggaattttattgtcctgcatgcaacagactctaggttattatt
agccactaaattcttgcaaacataaattagacctgaaaaatcacatctca
ttttaattcaaatatgcactatattaacatagtttagagtatttttattt
gatcacctgagtttgattctccaagttgtctgttcatacactttgcagtt
tcctgtggagttactgttctacttcattgatttgtcataactctttacat
ataactgacactatagaagaggtaggtaggtagacatcgatattctgagt
ttctccttgatcagtctattttggttttgttcttcaatgttctttacata
gttttccctatttgtttaaattttttaaataggtactaatttttttcatt
atgactcctgagttctctattctacttttaaaaactaccttagaataggt
aaggtatcagcattagtgtcttaattcttctattttataggataggttat
gaattagccattccttacggtttcgttgattgactggatttcctacttag
aagtgtatttttacttaggttattgtgattcggttt
gaattccagtgcccagaagcctggtgaagccagtagcaattacggccatg
ttatccttttcatttacttcatattattggtctctaaaatcaatcattcg
gtgcggttgggtaagggaggcatctttacaataggcgcgtgcgttcaaaa
cgcttgttgatcttacacagacattttggcaaggtctggggaaatttaaa
acggctgctttgaagctcactttgaaataaaaactagtcattttctaggt
ttgttttttttttttaaatgactaattttctagattagtcctgtttgtaa
tgatttcaaagtttgcctcttcacgtgctgtgttgcctgtccagaattca
gcccaatttgtctctccccgtgtaagatttctttcttttctttttttctt
tttctttttttaaatgttttaatctacaaaggaatcaaactgcttggctt
ggatatgtaggagttccagaaagtccacttgagaaacgggaactaagaga
agcacatgagtgctcctgaccctgggccagactgggtatgggatgccagc
tgtggcctgcctcacatggggaggcacagcaccatagcctttgtctcctc
tcctgcagctcttgcctccccaaatgccttcttgatgtagccacccgata
tacacaccactagagaacttcccctaatcagcaggtccccgagacgagac
attaaaataacaaatacatgaaaacattaatctgctggagagctgacatg
gacaggaggctggctggtccaaggttatccctttgttgtataaaaggcaa
ccaaatggcctcaaacacctcaataacttggacttaaaaagagtgaagat
taaacccaaagtaaaggtcaaacctttacattgcaaagccaagcacaagg
cgtggccccatgatgtcatcacccttacttagcaacctgcagtgcccaaa
ccaagctaggagaaggtgacattgtcagcaaagtctacggatacctttgt
tttacctccttatttaggatggcccttatgaagaggggggagcccctctt
gcctcctttcgggagattgaggtgacatcagctttggaactgtaatcttt
tcactgaggaattctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_47667625_47668756
seq2: B6Ng01-335D24.b_49_1184 (reverse)

seq1  AAACAGAATCA-AATAACCTAAGT-AAAATACACTTCTATGTAAGAAAT-  47
      |||| |||||| |||||||||||| |||||||||||||| ||| ||||| 
seq2  AAACCGAATCACAATAACCTAAGTAAAAATACACTTCTAAGTAGGAAATC  50

seq1  CAGTCAATCAACGAAACCGTAAGGAAAATGATAA-TCATAAACTAATCAT  96
      |||||||||||||||||||||||| ||  | ||| |||||| || ||| |
seq2  CAGTCAATCAACGAAACCGTAAGG-AATGGCTAATTCATAACCT-ATCCT  98

seq1  A-AAAATAGAAGAATTAAGACACTAATGCTGATACCTTA-CTATTCTAAG  144
      | ||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATAAAATAGAAGAATTAAGACACTAATGCTGATACCTTACCTATTCTAAG  148

seq1  GTAGTTTTT-AAAGTAGGATAGAGAACTCAGGAGTCATAATGAAAAAAAT  193
      ||||||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  GTAGTTTTTAAAAGTAGAATAGAGAACTCAGGAGTCATAATGAAAAAAAT  198

seq1  TAGTACCTATTTAAAAAATTTAAAACAAATTGGGAAAACTATGTAAAGAA  243
      ||||||||||||||||||||| |||||||| |||||||||||||||||||
seq2  TAGTACCTATTTAAAAAATTT-AAACAAATAGGGAAAACTATGTAAAGAA  247

seq1  CATTGAAGAACAAAACCAAAATAGACTGATCAAGGAGAAACTCAGAATAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAAGAACAAAACCAAAATAGACTGATCAAGGAGAAACTCAGAATAT  297

seq1  CGATGTCTACCTACCTACCTCTTCTATAGTGTCAGTTATATGTAAAGAGT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGTCTACCTACCTACCTCTTCTATAGTGTCAGTTATATGTAAAGAGT  347

seq1  TATGACAAATCAATGAAGTAGAACAGTAACTCCACAGGAAACTGCAAAGT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACAAATCAATGAAGTAGAACAGTAACTCCACAGGAAACTGCAAAGT  397

seq1  GTATGAACAGACAACTTGGAGAATCAAACTCAGGTGATCAAATAAAAATA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAACAGACAACTTGGAGAATCAAACTCAGGTGATCAAATAAAAATA  447

seq1  CTCTAAACTATGTTAATATAGTGCATATTTGAATTAAAATGAGATGTGAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAACTATGTTAATATAGTGCATATTTGAATTAAAATGAGATGTGAT  497

seq1  TTTTCAGGTCTAATTTATGTTTGCAAGAATTTAGTGGCTAATAATAACCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGGTCTAATTTATGTTTGCAAGAATTTAGTGGCTAATAATAACCT  547

seq1  AGAGTCTGTTGCATGCAGGACAATAAAATTCCTCAACCAGAAGTAGTAGC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTGTTGCATGCAGGACAATAAAATTCCTCAACCAGAAGTAGTAGC  597

seq1  ACCTGCCTATAACTCGAGCATTGGGGAGGCAGAGGCTGATAGATCTCTTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCTATAACTCGAGCATTGGGGAGGCAGAGGCTGATAGATCTCTTT  647

seq1  GAGTTCAAGGCCAGCCCTATCTACCCAGAGAGTTTCAGGATAGCCAGGGT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAAGGCCAGCCCTATCTACCCAGAGAGTTTCAGGATAGCCAGGGT  697

seq1  TACATAGAGAGACCCTGTTTTACAAAACAAAACAAAAGGTAAAAACAAAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGAGAGACCCTGTTTTACAAAACAAAACAAAAGGTAAAAACAAAA  747

seq1  CAAAACAAAACAAAATTCTCACCACTCTGGTGATTATAGACTATTAGAGG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAACAAAATTCTCACCACTCTGGTGATTATAGACTATTAGAGG  797

seq1  AGTTTTAGAACATTTAAAAATATTTCTACCATTTGATCAATGAATGCATT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAGAACATTTAAAAATATTTCTACCATTTGATCAATGAATGCATT  847

seq1  TACTTTTAGGACTTAGAGAAGGGACACTTCCCCATCACACTAGCTTTCAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTAGGACTTAGAGAAGGGACACTTCCCCATCACACTAGCTTTCAG  897

seq1  TCCCAAGGCAGCAGCCTGCTTTGGTCCCCTGCCGAGACGCTGCACAGCCC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGGCAGCAGCCTGCTTTGGTCCCCTGCCGAGACGCTGCACAGCCC  947

seq1  AGAACTCACTGGCTAGCTTCTTCAGTTCTACCAGTCAGTTCCTCTCAGGC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCACTGGCTAGCTTCTTCAGTTCTACCAGTCAGTTCCTCTCAGGC  997

seq1  TGTTTTAGATAAACTCATTCTCAAACCCCATGGTTCTCAGAATATTTTAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAGATAAACTCATTCTCAAACCCCATGGTTCTCAGAATATTTTAC  1047

seq1  ACCAATAGTATTTCTTTTCTACTTATTATTATGGCCTTGTAGATGAGTCA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATAGTATTTCTTTTCTACTTATTATTATGGCCTTGTAGATGAGTCA  1097

seq1  GAATTTCTCCACATTTTTCCCCTTTGGCCCCAAGAATTC  1132
      |||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCTCCACATTTTTCCCCTTTGGCCCCAAGAATTC  1136

seq1: chr18_47517502_47518621
seq2: B6Ng01-335D24.g_68_1183

seq1  GAATTCCAGTGCCCAGAAGCCTGGTGAAGCCAGTAGCAATTACGGCCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGCCCAGAAGCCTGGTGAAGCCAGTAGCAATTACGGCCATG  50

seq1  TTATCCTTTTCATTTACTTCATATTATTGGTCTCTAAAATCAATCATTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTTTTCATTTACTTCATATTATTGGTCTCTAAAATCAATCATTCG  100

seq1  GTGCGGTTGGGTAAGGGAGGCATCTTTACAATAGGCGCGTGCGTTCAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGGTTGGGTAAGGGAGGCATCTTTACAATAGGCGCGTGCGTTCAAAA  150

seq1  CGCTTGTTGATCTTACACAGACATTTTGGCAAGGTCTGGGGAAATTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTGTTGATCTTACACAGACATTTTGGCAAGGTCTGGGGAAATTTAAA  200

seq1  ACGGCTGCTTTGAAGCTCACTTTGAAATAAAAACTAGTCATTTTCTAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCTGCTTTGAAGCTCACTTTGAAATAAAAACTAGTCATTTTCTAGGT  250

seq1  TTGTTTTTTTTTTTTAAATGACTAATTTTCTAGATTAGTCCTGTTTGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTTTTTTTAAATGACTAATTTTCTAGATTAGTCCTGTTTGTAA  300

seq1  TGATTTCAAAGTTTGCCTCTTCACGTGCTGTGTTGCCTGTCCAGAATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCAAAGTTTGCCTCTTCACGTGCTGTGTTGCCTGTCCAGAATTCA  350

seq1  GCCCAATTTGTCTCTCCCCGTGTAAGATTTCTTTCTTTTCTTTTTTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAATTTGTCTCTCCCCGTGTAAGATTTCTTTCTTTTCTTTTTTTCTT  400

seq1  TTTCTTTTTTTAAATGTTTTAATCTACAAAGGAATCAAACTGCTTGGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTTTAAATGTTTTAATCTACAAAGGAATCAAACTGCTTGGCTT  450

seq1  GGATATGTAGGAGTTCCAGAAAGTCCACTTGAGAAACGGGAACTAAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATGTAGGAGTTCCAGAAAGTCCACTTGAGAAACGGGAACTAAGAGA  500

seq1  AGCACATGAGTGCTCCTGACCCTGGGCCAGACTGGGTATGGGATGCCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATGAGTGCTCCTGACCCTGGGCCAGACTGGGTATGGGATGCCAGC  550

seq1  TGTGGCCTGCCTCACATGGGGAGGCACAGCACCATAGCCTTTGTCTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCTGCCTCACATGGGGAGGCACAGCACCATAGCCTTTGTCTCCTC  600

seq1  TCCTGCAGCTCTTGCCTCCCCAAATGCCTTCTTGATGTAGCCACCCGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCAGCTCTTGCCTCCCCAAATGCCTTCTTGATGTAGCCACCCGATA  650

seq1  TACACACCACTAGAGAACTTCCCCTAATCAGCAGGTCCCCGAGACGAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACCACTAGAGAACTTCCCCTAATCAGCAGGTCCCCGAGACGAGAC  700

seq1  ATTAAAATAACAAATACATGAAAACATTAATCTGCTGGAGAGCTGACATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATAACAAATACATGAAAACATTAATCTGCTGGAGAGCTGACATG  750

seq1  GACAGGAGGCTGGCTGGTCCAAGGTTATCCCTTTGTTGTATAAAAGGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAGGCTGGCTGGTCCAAGGTTATCCCTTTGTTGTATAAAAGGCAA  800

seq1  CCAAATGGCCTCAAACACCTCAATAACTTGGACTTAAAAAGAGTGAAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGGCCTCAAACACCTCAATAACTTGGACTTAAAAAGAGTGAAGAT  850

seq1  TAAACCCAAAGTAAAGGTCAAACCTTTACATTGCAAAGCCAAGCACAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCCAAAGTAAAGGTCAAACCTTTACATTGCAAAGCCAAGCACAAGG  900

seq1  CGTGGCCCCAATGATGTCATCACCCTTACTTAGCAACCTGCAGTGCCCAA  950
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGCCCC-ATGATGTCATCACCCTTACTTAGCAACCTGCAGTGCCCAA  949

seq1  ACCAAGCTAGGAGAAGGTGACATTGTCAGCAAAGTCTACGGATACCTTTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCTAGGAGAAGGTGACATTGTCAGCAAAGTCTACGGATACCTTTG  999

seq1  TTTTACCTCCTTATTTAGGAATGGCCCTTAATGAAGA-GGGGGAGCCCCT  1049
      ||||||||||||||||||| ||||||||| ||||||| ||||||||||||
seq2  TTTTACCTCCTTATTTAGG-ATGGCCCTT-ATGAAGAGGGGGGAGCCCCT  1047

seq1  C-TGCCTCCTTTCGGGAGGATGAAGGTGACATCAGCCTTTGGACTGTAAA  1098
      | ||||||||||||||| |||  ||||||||||||| || | ||||| ||
seq2  CTTGCCTCCTTTCGGGA-GATTGAGGTGACATCAGCTTTGGAACTGT-AA  1095

seq1  TCTTTTTCACTGAGGAATTCTT  1120
      || |||||||||||||||||||
seq2  TC-TTTTCACTGAGGAATTCTT  1116