BAC Information

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BAC

Clone NameB6Ng01-336B09
Chromosome18 (Build37)
Map Location 55,810,482 - 55,983,752
singlet/doubletdoublet
Overlap geneLOC667401
Upstream geneEG545257, LOC100042489, Zfp608, LOC100043089
Downstream geneLOC667409, LOC629043, LOC100043099, LOC629057, LOC100043104, LOC676543, LOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171, Lmnb1, March3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336B09.bB6Ng01-336B09.g
ACCGA121123GA121124
length1,0581,089
definitionB6Ng01-336B09.b B6Ng01-336B09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,982,694 - 55,983,752)(55,810,482 - 55,811,557)
sequence
gaattcagtgtttgaaaaatctcggtagattagtaaagcagagatttatc
aacagtcctcttccctgtcctgcaaaaggacttgattttcagaggtttaa
atctgtcaggaaaacaacacagcacatttcatgctgctcttgtgttcttt
cagttccaaggagggcatctgtcagaagtagggattaaggaaggtgagat
gcagcagactcgctaagtaatatgtacaaggagatcacgtggcaaattct
gagggaccgagtgagacttaaccctgatatatggggaagagagaatatga
attgacaagacacatcagtagcaattgaagggacaagaccagcaggagca
ggaacagcaaaagcatgccagatgcaacactgaagaccgaccccaatcca
ggactccaaaccagaggtgaagacctcccagaacagcagatctcaagctg
aggacagcaaccctgtcaggggtcgcatgtcctgcttatcaggtatttac
ttcacaattcacaacggtgccaaaattgagttatgaagtagcaacgaaat
aattttaaggttggggtacatcacagtacaaggaactgtcctaaaatacg
aaacagagattaatgtggttgtttgaaaaggtgggagatttaggaagagg
gcattcctctttgaattctttttttttttcatggagaagtagatacctgg
aggctgaggtaccagtgaacatgaaggccagagcaagtgcagatgcctgc
agtagccatctttgtcttccctgtggggaagccagtgaagtctgttgtac
accagctgttttcttactgacattcaagctcccctttttcctgatgggta
gtctgaaatgattaaggccaacatcataaaaaaaggcttctgtatttgaa
gtcacttattgaaacatctcacaactgataactgatgtctcctcagacag
ccaacatctctttttttgaatagtttttccattttggaaattttaatcat
ctgtggtctcagactctgacattctgcatacacgtatgtgtgtgtgtgtg
tgtgtgtg

gaattcttctgcaaaagcaacaagtgtattgaacagctgagccgtttctc
cagccctattagattatgtaaagtgtgtatgtgtttgtgtgtgtgtgtgt
gtgtgttccctagtgcatgcatgtgagaggtgggtttgtgcaatgtgtgg
aggtcagaagagagtgaggaacccttggagctggacagtttgtcagacac
ttgacatgagtggtgaactctgatcctctgaaagaacagtgcatgcctta
acccctgagctgtcactccagctacctcacccacctcacttgtaagttaa
ctgaaatggctaagcttggtccttgcaaagctacagaaatgatatgactg
ttgatcatagaacccattgcttcattttcacagtgaaaggaaaacaaaga
tccaaatacagtggacttaccaatttgcctttaagttaattacacttttt
gtatttagtccaacaggcttctgtcatcttctctgtgttatttttccccg
tggaaacatcccagttagagagggataagctgtatgcgagagagagctca
gcttctgggcactgggagccaatacctgactcgtagttgctgtgtatgtg
agagagctcccataggtgcactggattgctcagaataagagctcaccaca
cctagaatgtgcatctcaagcaaaaacccccctgaaagctaccggtgagt
ggcaagatcatgttatatatcacattttatccttctttgtttctggactc
ttcgggaccagagatcagggaattactccatcgctcctttctttttcttt
ggacgctaagtctgaatctgggttttgttcatttgtttgattctttgatt
ttggtctcctatttttattagaacttctttgtgttattcgtgtcgactga
aagtattttttaaaacttttctcagtttgtgaggacattctatcttacta
tcctttagccctacattttccaagtttgagggcatacattttggtatatg
gctacggtatattatatttacagaggagtgcttctataattgacatttcc
taattcaaaggtcttttagggttgaactttcctaagttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_55982694_55983752
seq2: B6Ng01-336B09.b_49_1106 (reverse)

seq1  CACACACACACACACACACACATACGTGTATGCAGAATGTTCAGAGTTCT  50
      ||||||||||||||||||||||||||||||||||||||| |||||| |||
seq2  CACACACACACACACACACACATACGTGTATGCAGAATG-TCAGAG-TCT  48

seq1  GAGACCACAGATGATTTAAAATTTCCAAAATGG-AAAACTATTCAAAAAA  99
      |||||||||||||| |||||||||||||||||| ||||||||||||||||
seq2  GAGACCACAGATGA-TTAAAATTTCCAAAATGGAAAAACTATTCAAAAAA  97

seq1  AGAGATGTTGGCTGTCTGAGGAGACATCAGTTATCAGTTGTGAGATGTTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGTTGGCTGTCTGAGGAGACATCAGTTATCAGTTGTGAGATGTTT  147

seq1  CAATAAGTGACTTCAAATACAGAAGCC-TTTTTTATGATGTTGGCCTTAA  198
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAATAAGTGACTTCAAATACAGAAGCCTTTTTTTATGATGTTGGCCTTAA  197

seq1  TCATTTCAGACTACCCATCAGGAAAAAGGGGAGCTTGAATGTCAGTAAGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCAGACTACCCATCAGGAAAAAGGGGAGCTTGAATGTCAGTAAGA  247

seq1  AAACAGCTGGTGTACAACAGACTTCACTGGCTTCCCCACAGGGAAGACAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTGGTGTACAACAGACTTCACTGGCTTCCCCACAGGGAAGACAA  297

seq1  AGATGGCTACTGCAGGCATCTGCACTTGCTCTGGCCTTCATGTTCACTGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCTACTGCAGGCATCTGCACTTGCTCTGGCCTTCATGTTCACTGG  347

seq1  TACCTCAGCCTCCAGGTATCTACTTCTCCATGAAAAAAAAAAAGAATTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCAGCCTCCAGGTATCTACTTCTCCATGAAAAAAAAAAAGAATTCA  397

seq1  AAGAGGAATGCCCTCTTCCTAAATCTCCCACCTTTTCAAACAACCACATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAATGCCCTCTTCCTAAATCTCCCACCTTTTCAAACAACCACATT  447

seq1  AATCTCTGTTTCGTATTTTAGGACAGTTCCTTGTACTGTGATGTACCCCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTGTTTCGTATTTTAGGACAGTTCCTTGTACTGTGATGTACCCCA  497

seq1  ACCTTAAAATTATTTCGTTGCTACTTCATAACTCAATTTTGGCACCGTTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAAAATTATTTCGTTGCTACTTCATAACTCAATTTTGGCACCGTTG  547

seq1  TGAATTGTGAAGTAAATACCTGATAAGCAGGACATGCGACCCCTGACAGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGTGAAGTAAATACCTGATAAGCAGGACATGCGACCCCTGACAGG  597

seq1  GTTGCTGTCCTCAGCTTGAGATCTGCTGTTCTGGGAGGTCTTCACCTCTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGTCCTCAGCTTGAGATCTGCTGTTCTGGGAGGTCTTCACCTCTG  647

seq1  GTTTGGAGTCCTGGATTGGGGTCGGTCTTCAGTGTTGCATCTGGCATGCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGAGTCCTGGATTGGGGTCGGTCTTCAGTGTTGCATCTGGCATGCT  697

seq1  TTTGCTGTTCCTGCTCCTGCTGGTCTTGTCCCTTCAATTGCTACTGATGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGTTCCTGCTCCTGCTGGTCTTGTCCCTTCAATTGCTACTGATGT  747

seq1  GTCTTGTCAATTCATATTCTCTCTTCCCCATATATCAGGGTTAAGTCTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTCAATTCATATTCTCTCTTCCCCATATATCAGGGTTAAGTCTCA  797

seq1  CTCGGTCCCTCAGAATTTGCCACGTGATCTCCTTGTACATATTACTTAGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGTCCCTCAGAATTTGCCACGTGATCTCCTTGTACATATTACTTAGC  847

seq1  GAGTCTGCTGCATCTCACCTTCCTTAATCCCTACTTCTGACAGATGCCCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGCTGCATCTCACCTTCCTTAATCCCTACTTCTGACAGATGCCCT  897

seq1  CCTTGGAACTGAAAGAACACAAGAGCAGCATGAAATGTGCTGTGTTGTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGAACTGAAAGAACACAAGAGCAGCATGAAATGTGCTGTGTTGTTT  947

seq1  TCCTGACAGATTTAAACCTCTGAAAATCAAGTCCTTTTGCAGGACAGGGA  998
      |||||||||||||||||||||||||                 ||||||||
seq2  TCCTGACAGATTTAAACCTCTGAAANNNNNNNNNNNNNNNNNGACAGGGA  997

seq1  AGAGGACTGTTGATAAATCTCTGCTTTACTAATCTACCGAGATTTTTCAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACTGTTGATAAATCTCTGCTTTACTAATCTACCGAGATTTTTCAA  1047

seq1  ACACTGAATTC  1059
      |||||||||||
seq2  ACACTGAATTC  1058


seq1: chr18_55810482_55811557
seq2: B6Ng01-336B09.g_72_1160

seq1  GAATTCTTCTGCAAAAGCAACAAGTGTATTGAACAGCTGAGCCGTTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGCAAAAGCAACAAGTGTATTGAACAGCTGAGCCGTTTCTC  50

seq1  CAGCCCTATTAGATTATGTAAAGTGTGTATGTGTTTGTGTGTGTGTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTATTAGATTATGTAAAGTGTGTATGTGTTTGTGTGTGTGTGTGT  100

seq1  GTGTGTTCCCTAGTGCATGCATGTGAGAGGTGGGTTTGTGCAATGTGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTCCCTAGTGCATGCATGTGAGAGGTGGGTTTGTGCAATGTGTGG  150

seq1  AGGTCAGAAGAGAGTGAGGAACCCTTGGAGCTGGACAGTTTGTCAGACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGAAGAGAGTGAGGAACCCTTGGAGCTGGACAGTTTGTCAGACAC  200

seq1  TTGACATGAGTGGTGAACTCTGATCCTCTGAAAGAACAGTGCATGCCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATGAGTGGTGAACTCTGATCCTCTGAAAGAACAGTGCATGCCTTA  250

seq1  ACCCCTGAGCTGTCACTCCAGCTACCTCACCCACCTCACTTGTAAGTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGAGCTGTCACTCCAGCTACCTCACCCACCTCACTTGTAAGTTAA  300

seq1  CTGAAATGGCTAAGCTTGGTCCTTGCAAAGCTACAGAAATGATATGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATGGCTAAGCTTGGTCCTTGCAAAGCTACAGAAATGATATGACTG  350

seq1  TTGATCATAGAACCCATTGCTTCATTTTCACAGTGAAAGGAAAACAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCATAGAACCCATTGCTTCATTTTCACAGTGAAAGGAAAACAAAGA  400

seq1  TCCAAATACAGTGGACTTACCAATTTGCCTTTAAGTTAATTACACTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATACAGTGGACTTACCAATTTGCCTTTAAGTTAATTACACTTTTT  450

seq1  GTATTTAGTCCAACAGGCTTCTGTCATCTTCTCTGTGTTATTTTTCCCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAGTCCAACAGGCTTCTGTCATCTTCTCTGTGTTATTTTTCCCCG  500

seq1  TGGAAACATCCCAGTTAGAGAGGGATAAGCTGTATGCGAGAGAGAGCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACATCCCAGTTAGAGAGGGATAAGCTGTATGCGAGAGAGAGCTCA  550

seq1  GCTTCTGGGCACTGGGAGCCAATACCTGACTCGTAGTTGCTGTGTATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGGGCACTGGGAGCCAATACCTGACTCGTAGTTGCTGTGTATGTG  600

seq1  AGAGAGCTCCCATAGGTGCACTGGATTGCTCAGAATAAGAGCTCACCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCTCCCATAGGTGCACTGGATTGCTCAGAATAAGAGCTCACCACA  650

seq1  CCTAGAATGTGCATCTCAAGCAAAAACCCCCCTGAAAGCTACCGGTGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAATGTGCATCTCAAGCAAAAACCCCCCTGAAAGCTACCGGTGAGT  700

seq1  GGCAAGATCATGTTATATATCACA-TTTATCCTTCTTTGTTTCTGGACTC  749
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGCAAGATCATGTTATATATCACATTTTATCCTTCTTTGTTTCTGGACTC  750

seq1  TTCGGGACCAGAGATCAGGGAATTACTCCATCGCTCCTTTCTTTTTCTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGGACCAGAGATCAGGGAATTACTCCATCGCTCCTTTCTTTTTCTTT  800

seq1  GGACGCTAAGTCTGAATCTGGGTTTTGTTCATTTGTTTGATTCTTTGATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGCTAAGTCTGAATCTGGGTTTTGTTCATTTGTTTGATTCTTTGATT  850

seq1  TTGGTCTCCTATTTTTATTAGAACTTCTTTGTGTTATTCGTGTCGACTG-  898
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTGGTCTCCTATTTTTATTAGAACTTCTTTGTGTTATTCGTGTCGACTGA  900

seq1  AAGTA-TTTTTAAAACTTTTCTCAG-TTGTGAGGACATTCTATCCTACTA  946
      ||||| ||||||||||||||||||| |||||||||||||||||| |||||
seq2  AAGTATTTTTTAAAACTTTTCTCAGTTTGTGAGGACATTCTATCTTACTA  950

seq1  TTCTTTAGCCC-ACA-TTTCCAAG-TTGA-GGCATACATTTT-GTATATG  991
      | ||||||||| ||| |||||||| |||| |||||||||||| |||||||
seq2  TCCTTTAGCCCTACATTTTCCAAGTTTGAGGGCATACATTTTGGTATATG  1000

seq1  GCTACGGTATATTATATTTACCAGAGGAGTGC-TCTAT-ATTGACATTTT  1039
      |||||||||||||||||||| ||||||||||| ||||| ||||||| |||
seq2  GCTACGGTATATTATATTTA-CAGAGGAGTGCTTCTATAATTGACA-TTT  1048

seq1  CTTATTTCAAAGGGTTTTTA-GGTTG-ACTT--CTAAGTTG  1076
      | || ||||||||  ||||| ||||| ||||  ||||||||
seq2  CCTAATTCAAAGGTCTTTTAGGGTTGAACTTTCCTAAGTTG  1089


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