BAC Information

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BAC

Clone NameB6Ng01-337C20
Chromosome18 (Build37)
Map Location 26,983,793 - 27,121,881
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041263, LOC100041274
Downstream geneEG665977, EG665646
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337C20.bB6Ng01-337C20.g
ACCGA121884GA121885
length1,1831,103
definitionB6Ng01-337C20.b B6Ng01-337C20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,983,793 - 26,984,969)(27,120,774 - 27,121,881)
sequence
gaattcatcttgctcaagatccaaatataccactttgggacatatgcact
tcatcctatcacagtgtacttcatcctatcacagggacactttttcagta
gtgtgcattgctgctatattcaaaatatacataaattggaaaaaatattg
atgtccctgatgacacaaatagataaagaaaatgtggtaatttacacaaa
gacatattgctcagtcattgaataaattttcaaacggccaggttgttgcc
aagactatagtttacaccgccttgatcagccatcattagagaagcttcct
tatttgatgggaacaaaaataaagtcctacaccaaagcagagacttagag
actatagaatattcagccctaaatagaatgtttctgaaaatttcttcctc
ttaggtttcagggaaccctgcagaagaagaggcagaaagagtgtgagagc
cacagagactgaggacagagtgaaaactaggtccttgttctaaatcatca
gggtcaaatcacaataaactcatagagactgaggcagcatgcatacggcc
tacataggtctgtacctgaccttctgtttacatatatagcttccagttta
gtgttttcagagtgcggatacaagtgagtctctgagtctttaaccttccc
ctgggctcttatatttatgtttgttttgtttgattccagtatgttaggtt
ttttaatttttattttttcaaaagtcactatgtttagtaatgtcatattt
ggcattgtctctttagaccataaaaatcatattgtcaaaatagaaaaaat
acaaaattatcattcatatttctcatatataattgctttaataatgtatt
tatggacaacagttaaaattataatatcttctttgtagaatgttctgagt
ccccctttctaaacgaccctttcccttcctagtacttatcaaagacttac
ttgtaatataaggcataatatcatctacaattcattcccaaacagtcctc
agtctctatgaaactctaaatgtagccctcatacatttttgtactattgc
taaaggagtagaaattgctatatataagccagtctttcactgatcagact
aacttacacaatatcttatgcatagaataaaatgaatcatgtttttagcc
tttggcccaagagccatagctttaattacattg
gaattcaggggacaactcatagctgtgtttctctctttccattatatgga
tcttagagatcacaattagatcatcaaactttgcttcacatgtctttatt
agctaagacatctaagtggctcagctaccctttttttttaaagtggcaat
acaatgtttaatacaaaggatgaactgaattattttatgtttgcatgtca
tggtgattttttgtttataaaataaagaaaaaatattccaaaatttaacg
tttaaattttagaaaaatacatttaagcagattgaccttcctctgaaatg
atactgcaactgctttcagttggtgaaaacatacttgttccaagaggaaa
atgcaccgtggtgactttaatttgactttacagtatgctccttcttggtc
tgcagaagatatatacttatttactctaaaatatggccattgcccctctg
gccttctaatcttagtactctcttcctattgagaccaacacttaagtctg
catccatcagaaatctctctacaggctatgtctccacaaaggcaagagta
ggcatacttttgtgacttgtctctccacatactcagaattctcgttctag
ctagttttctcagcatctttattttattataatttaatatgatctggagc
attcatactttttaacaacttggggtataattatttacattggtaaagct
gttgttctcattgataaagtgagaaatggaagatagatataattatagac
acaaacctgctagtgacctaggagacaacccgttttattacagtaccaat
aaaactttcttaatcacgtttcaacatagtaacatattacaattatgaaa
ctaataagaaagaattaagtgagagtaggtagtaatgcttaccttgtaat
agggctgactaggatcaacttattctttaggtaaatacagcaaagtgagt
ccccattatgaccccagactcatatctgagttgtaaatatacttaggtaa
ctcgatgcaaaaaaaaaaaatagaaatagttaaacaagtaccatgatgta
ccttatttgacctatgttgactctttggtaggactgctctattcgatcgt
aaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_26983793_26984969
seq2: B6Ng01-337C20.b_45_1227

seq1  GAATTCATCTTGCTCAAGATCCAAATATACCACTTTGGGACATATGCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTGCTCAAGATCCAAATATACCACTTTGGGACATATGCACT  50

seq1  TCATCCTATCACAGTGTACTTCATCCTATCACAGGGACACTTTTTCAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTATCACAGTGTACTTCATCCTATCACAGGGACACTTTTTCAGTA  100

seq1  GTGTGCATTGCTGCTATATTCAAAATATACATAAATTGGAAAAAATATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCATTGCTGCTATATTCAAAATATACATAAATTGGAAAAAATATTG  150

seq1  ATGTCCCTGATGACACAAATAGATAAAGAAAATGTGGTAATTTACACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCTGATGACACAAATAGATAAAGAAAATGTGGTAATTTACACAAA  200

seq1  GACATATTGCTCAGTCATTGAATAAATTTTCAAACGGCCAGGTTGTTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATTGCTCAGTCATTGAATAAATTTTCAAACGGCCAGGTTGTTGCC  250

seq1  AAGACTATAGTTTACACCGCCTTGATCAGCCATCATTAGAGAAGCTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTATAGTTTACACCGCCTTGATCAGCCATCATTAGAGAAGCTTCCT  300

seq1  TATTTGATGGGAACAAAAATAAAGTCCTACACCAAAGCAGAGACTTAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGATGGGAACAAAAATAAAGTCCTACACCAAAGCAGAGACTTAGAG  350

seq1  ACTATAGAATATTCAGCCCTAAATAGAATGTTTCTGAAAATTTCTTCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAGAATATTCAGCCCTAAATAGAATGTTTCTGAAAATTTCTTCCTC  400

seq1  TTAGGTTTCAGGGAACCCTGCAGAAGAAGAGGCAGAAAGAGTGTGAGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTTCAGGGAACCCTGCAGAAGAAGAGGCAGAAAGAGTGTGAGAGC  450

seq1  CACAGAGACTGAGGACAGAGTGAAAACTAGGTCCTTGTTCTAAATCATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGACTGAGGACAGAGTGAAAACTAGGTCCTTGTTCTAAATCATCA  500

seq1  GGGTCAAATCACAATAAACTCATAGAGACTGAGGCAGCATGCATACGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAAATCACAATAAACTCATAGAGACTGAGGCAGCATGCATACGGCC  550

seq1  TACATAGGTCTGTACCTGACCTTCTGTTTACATATATAGCTTCCAGTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGGTCTGTACCTGACCTTCTGTTTACATATATAGCTTCCAGTTTA  600

seq1  GTGTTTTCAGAGTGCGGATACAAGTGAGTCTCTGAGTCTTTAACCTTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTCAGAGTGCGGATACAAGTGAGTCTCTGAGTCTTTAACCTTCCC  650

seq1  CTGGGCTCTTATATTTATGTTTGTTTTGTTTGATTCCAGTATGTTAGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTCTTATATTTATGTTTGTTTTGTTTGATTCCAGTATGTTAGGTT  700

seq1  TTTTAATTTTTATTTTTTCAAAAGTCACTATGTTTAGTAATGTCATATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTTTTATTTTTTCAAAAGTCACTATGTTTAGTAATGTCATATTT  750

seq1  GGCATTGTCTCTTTAGACCATAAAAATCATATTGTCAAAATAGAAAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTGTCTCTTTAGACCATAAAAATCATATTGTCAAAATAGAAAAAAT  800

seq1  ACAAAATTATCATTCATATTTCTCATATATAATTGCTTTAATAATGTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATTATCATTCATATTTCTCATATATAATTGCTTTAATAATGTATT  850

seq1  TATGGACAACAGTTAAAATTATAATATCTTCTTTGTAGAATGTTCTGAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGACAACAGTTAAAATTATAATATCTTCTTTGTAGAATGTTCTGAGT  900

seq1  CCCCCTTTCTAAACGACCCTTTCCC-TCCTAGTACTTATCAAAGACTTAC  949
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCCCCTTTCTAAACGACCCTTTCCCTTCCTAGTACTTATCAAAGACTTAC  950

seq1  TTGTAATATAAGGCATAATATCATCTACAATTCATTCCCAAACAGTCCTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATATAAGGCATAATATCATCTACAATTCATTCCCAAACAGTCCTC  1000

seq1  AGTCTCTATGAAAACTCTAAATGTAGCCCTCATACA-TTTTGTACTATTG  1048
      |||||||||| ||||||||||||||||||||||||| |||||||||||||
seq2  AGTCTCTATG-AAACTCTAAATGTAGCCCTCATACATTTTTGTACTATTG  1049

seq1  CTAAAGGAAGTAGAAATTGC--TATATAAGCCAGTC-TTCACTGATCAAG  1095
      ||||||| ||||||||||||  |||||||||||||| |||||||||| ||
seq2  CTAAAGG-AGTAGAAATTGCTATATATAAGCCAGTCTTTCACTGATC-AG  1097

seq1  AACTACCTACACATAATC-TATGCATAGGAT-AAATGATTCAGTGTTTTT  1143
      |   || ||||||  ||| ||||||||| || |||||| ||| |||||||
seq2  ACTAACTTACACAATATCTTATGCATAGAATAAAATGAATCA-TGTTTTT  1146

seq1  AG-CTTTGGCCCAAAGAG-CATAG--TTTATTACATTG  1177
      || ||||||||| ||||| |||||  || |||||||||
seq2  AGCCTTTGGCCC-AAGAGCCATAGCTTTAATTACATTG  1183

seq1: chr18_27120774_27121881
seq2: B6Ng01-337C20.g_62_1164 (reverse)

seq1  TTTACGAACGGAATAGAGCAGTCTTAACAAAAGAGTC-ACATA-GTCAAA  48
      ||||||| | ||||||||||||| | || |||||||| ||||| ||||||
seq2  TTTACGATC-GAATAGAGCAGTCCT-ACCAAAGAGTCAACATAGGTCAAA  48

seq1  ATTAGGGTACATCATTGGTACTTGTTT-ACTATTTCTAATTTTTTTTTTG  97
        || ||||||||| |||||||||||| |||||||||| |||||||||| 
seq2  --TAAGGTACATCA-TGGTACTTGTTTAACTATTTCTATTTTTTTTTTTT  95

seq1  CAATCGAGTTACCTAAAGTATATTTACAACTCAGATATGAGTCTGGGGTC  147
        |||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCATCGAGTTACCT-AAGTATATTTACAACTCAGATATGAGTCTGGGGTC  144

seq1  ATAATGGGGACTCACTTTGCTGTATTTACCTAAAAGAATAAGTTGATCCT  197
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATAATGGGGACTCACTTTGCTGTATTTACCT-AAAGAATAAGTTGATCCT  193

seq1  AGTCAGCCCTATTTACAAGGTAAGCATTACTACCTACTCTCACTTAATTC  247
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCCCTA-TTACAAGGTAAGCATTACTACCTACTCTCACTTAATTC  242

seq1  TTTCTTATTAGTTTCATAATTGTAATATGTTACTATGTTGAAACGTGATT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATTAGTTTCATAATTGTAATATGTTACTATGTTGAAACGTGATT  292

seq1  AAGAAAGTTTTATTGGTACTGTAATAAAACGGGTTGTCTCCTAGGTCACT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGTTTTATTGGTACTGTAATAAAACGGGTTGTCTCCTAGGTCACT  342

seq1  AGCAGGTTTGTGTCTATAATTATATCTATCTTCCATTTCTCACTTTATCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTTTGTGTCTATAATTATATCTATCTTCCATTTCTCACTTTATCA  392

seq1  ATGAGAACAACAGCTTTACCAATGTAAATAATTATACCCCAAGTTGTTAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAACAACAGCTTTACCAATGTAAATAATTATACCCCAAGTTGTTAA  442

seq1  AAAGTATGAATGCTCCAGATCATATTAAATTATAATAAAATAAAGATGCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATGAATGCTCCAGATCATATTAAATTATAATAAAATAAAGATGCT  492

seq1  GAGAAAACTAGCTAGAACGAGAATTCTGAGTATGTGGAGAGACAAGTCAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAACTAGCTAGAACGAGAATTCTGAGTATGTGGAGAGACAAGTCAC  542

seq1  AAAAGTATGCCTACTCTTGCCTTTGTGGAGACATAGCCTGTAGAGAGATT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTATGCCTACTCTTGCCTTTGTGGAGACATAGCCTGTAGAGAGATT  592

seq1  TCTGATGGATGCAGACTTAAGTGTTGGTCTCAATAGGAAGAGAGTACTAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGGATGCAGACTTAAGTGTTGGTCTCAATAGGAAGAGAGTACTAA  642

seq1  GATTAGAAGGCCAGAGGGGCAATGGCCATATTTTAGAGTAAATAAGTATA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGAAGGCCAGAGGGGCAATGGCCATATTTTAGAGTAAATAAGTATA  692

seq1  TATCTTCTGCAGACCAAGAAGGAGCATACTGTAAAGTCAAATTAAAGTCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCTGCAGACCAAGAAGGAGCATACTGTAAAGTCAAATTAAAGTCA  742

seq1  CCACGGTGCATTTTCCTCTTGGAACAAGTATGTTTTCACCAACTGAAAGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGTGCATTTTCCTCTTGGAACAAGTATGTTTTCACCAACTGAAAGC  792

seq1  AGTTGCAGTATCATTTCAGAGGAAGGTCAATCTGCTTAAATGTATTTTTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCAGTATCATTTCAGAGGAAGGTCAATCTGCTTAAATGTATTTTTC  842

seq1  TAAAATTTAAACGTTAAATTTTGGAATATTTTTTCTTTATTTTATAAACA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTAAACGTTAAATTTTGGAATATTTTTTCTTTATTTTATAAACA  892

seq1  AAAAATCACCATGACATGCAAACATAAAATAATTCAGTTCATCCTTTGTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCACCATGACATGCAAACATAAAATAATTCAGTTCATCCTTTGTA  942

seq1  TTAAACATTGTATTGCCACTTTAAAAAAAAAGGGTAGCTGAGCCACTTAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACATTGTATTGCCACTTTAAAAAAAAAGGGTAGCTGAGCCACTTAG  992

seq1  ATGTCTTAGCTAATAAAGACATGTGAAGCAAAGTTTGATGATCTAATTGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTAGCTAATAAAGACATGTGAAGCAAAGTTTGATGATCTAATTGT  1042

seq1  GATCTCTAAGATCCATATAATGGAAAGAGAGAAACACAGCTATGAGTTGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTAAGATCCATATAATGGAAAGAGAGAAACACAGCTATGAGTTGT  1092

seq1  CCCCTGAATTC  1108
      |||||||||||
seq2  CCCCTGAATTC  1103