BAC Information

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BAC

Clone NameB6Ng01-337L15
Chromosome18 (Build37)
Map Location 54,328,005 - 54,444,118
singlet/doubletdoublet
Overlap genenone
Upstream geneSnx2, Gm1859, Snx24, Ppic, Prdm6, Ccdc100, Csnk1g3, EG433184, LOC667360
Downstream geneEG545257, LOC100042489, Zfp608, LOC100043089
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337L15.bB6Ng01-337L15.g
ACCGA122262GA122263
length7591,079
definitionB6Ng01-337L15.b B6Ng01-337L15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,443,360 - 54,444,118)(54,328,005 - 54,329,098)
sequence
gaattcaaacctccttcacttggacgtgataaaatccagaaacttgattc
agaatctaaaacagtggtcctcaacccacctagtgatgtgacccttgaat
acagctccttattctatggtgcccccccccaatcataaaattattttgtt
gttacttcatacagtaattttgctgctgttaggaattgcaatgtaaacat
ctggtgtgctacccaaagggatcgtgacccacagattgagaacacaattc
agaaatattcagcttctttactactctaatctgatactgagtgtgagatt
aacgcatagtttcaaaatggattttgtttttcttgcacaataattacttt
ctaacctgctatatcctccacgttggcctgaacctctagcaattctattt
caagactgatagtgaatacaagatgaaattaaaatcatgagctctgtgtg
tgctagttaaaaacctgtccccaggtcaggcattggaccactgttaagta
taccctgggaataatatggattgtactttgtttgtacagtgtccggccta
caggggtcttagattagcctgcctcaaatgcctgatgctgtggtaaggga
cagagagccaagcccagctaccccatggcaggtgaattagtgtttcctct
gcatcttgctctttaatgagctctgctgcccttgccttacccttctcccc
ttcttcaaatctaaatttgcctgttttatctctgcacagctatctggggt
gggtggggg

gaattccgtgatctgtgctttagaaaacaaaatagctacagtggccatgg
ggcagaacttcgtaaaggaaaatggaagtcaggattgactgttgcagctt
agggctactaaatcagatgcacccagggcagagagcaggggacaaagaga
catttgggacctttaaaatgagaaagggaaaggggtcaaacatgtttggg
gcttaattaataataattagtattactgataatggcagctaacagatagc
aaatacttactatttaacactaaattagagatctcattaatcttcagggc
aatgcagtgaggcaggtgctattatcacagatttaattacatggaaataa
aaatggttgggtggctataataccaagaactgaggcgaatacttgaagtc
acctgtgacacaccccatctctgtagccagtacactacagggaagcaaaa
gaaggaactaaggagacagatctcccctggggctgggaatgtggggaagt
ccactggactggggtagaagctgtaattataaagatattggtctactctg
aggctactgaaaaagaaacgctaccttgttttggaaaatgttctaggaag
acctagcacaatttgaacagttttgctgatatgattagtcttggcacaga
cagcacttgtgacctccctgctggctcaaacttgtaatggacacacaaca
gatgagttagctgttgtgtgatgttctctaggaccacatgacagccactc
cagctcatgatggatggagctgccaacctcacatgtgcggtatatggttt
gtgctaggctgggccagtattttctcttaagatcattttttttaatcaaa
taatgttttaattttttgagaatttcaagcaatgcatcaaatcaccctgg
ctacctgaatacctccaatattcacctccatttttttttaataggtattt
tcctcgttacattttcatgctatccaaggtccccataccaacccccatcc
ctacccacccactccccttttgtcttggcatccctgtactgggcatataa
aggtgcaagttcaatgggcctctctttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_54443360_54444118
seq2: B6Ng01-337L15.b_48_806 (reverse)

seq1  CCCCCACCCACCCCAGATAGCTGTGCAGAGATAAAACAGGCAAATTTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCCACCCCAGATAGCTGTGCAGAGATAAAACAGGCAAATTTAGA  50

seq1  TTTGAAGAAGGGGAGAAGGGTAAGGCAAGGGCAGCAGAGCTCATTAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGAAGGGGAGAAGGGTAAGGCAAGGGCAGCAGAGCTCATTAAAGA  100

seq1  GCAAGATGCAGAGGAAACACTAATTCACCTGCCATGGGGTAGCTGGGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGATGCAGAGGAAACACTAATTCACCTGCCATGGGGTAGCTGGGCTT  150

seq1  GGCTCTCTGTCCCTTACCACAGCATCAGGCATTTGAGGCAGGCTAATCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCTGTCCCTTACCACAGCATCAGGCATTTGAGGCAGGCTAATCTA  200

seq1  AGACCCCTGTAGGCCGGACACTGTACAAACAAAGTACAATCCATATTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCTGTAGGCCGGACACTGTACAAACAAAGTACAATCCATATTATT  250

seq1  CCCAGGGTATACTTAACAGTGGTCCAATGCCTGACCTGGGGACAGGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGTATACTTAACAGTGGTCCAATGCCTGACCTGGGGACAGGTTTT  300

seq1  TAACTAGCACACACAGAGCTCATGATTTTAATTTCATCTTGTATTCACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAGCACACACAGAGCTCATGATTTTAATTTCATCTTGTATTCACTA  350

seq1  TCAGTCTTGAAATAGAATTGCTAGAGGTTCAGGCCAACGTGGAGGATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTTGAAATAGAATTGCTAGAGGTTCAGGCCAACGTGGAGGATATA  400

seq1  GCAGGTTAGAAAGTAATTATTGTGCAAGAAAAACAAAATCCATTTTGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTTAGAAAGTAATTATTGTGCAAGAAAAACAAAATCCATTTTGAAA  450

seq1  CTATGCGTTAATCTCACACTCAGTATCAGATTAGAGTAGTAAAGAAGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCGTTAATCTCACACTCAGTATCAGATTAGAGTAGTAAAGAAGCTG  500

seq1  AATATTTCTGAATTGTGTTCTCAATCTGTGGGTCACGATCCCTTTGGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTCTGAATTGTGTTCTCAATCTGTGGGTCACGATCCCTTTGGGTA  550

seq1  GCACACCAGATGTTTACATTGCAATTCCTAACAGCAGCAAAATTACTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACCAGATGTTTACATTGCAATTCCTAACAGCAGCAAAATTACTGTA  600

seq1  TGAAGTAACAACAAAATAATTTTATGATTGGGGGGGGGCACCATAGAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTAACAACAAAATAATTTTATGATTGGGGGGGGGCACCATAGAATA  650

seq1  AGGAGCTGTATTCAAGGGTCACATCACTAGGTGGGTTGAGGACCACTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTGTATTCAAGGGTCACATCACTAGGTGGGTTGAGGACCACTGTT  700

seq1  TTAGATTCTGAATCAAGTTTCTGGATTTTATCACGTCCAAGTGAAGGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTCTGAATCAAGTTTCTGGATTTTATCACGTCCAAGTGAAGGAGG  750

seq1  TTTGAATTC  759
      |||||||||
seq2  TTTGAATTC  759


seq1: chr18_54328005_54329098
seq2: B6Ng01-337L15.g_67_1145

seq1  GAATTCCGTGATCTGTGCTTTAGAAAACAAAATAGCTACAGTGGCCATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGTGATCTGTGCTTTAGAAAACAAAATAGCTACAGTGGCCATGG  50

seq1  GGCAGAACTTCGTAAAGGAAAATGGAAGTCAGGATTGACTGTTGCAGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAACTTCGTAAAGGAAAATGGAAGTCAGGATTGACTGTTGCAGCTT  100

seq1  AGGGCTACTAAATCAGATGCACCCAGGGCAGAGAGCAGGGGACAAAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTACTAAATCAGATGCACCCAGGGCAGAGAGCAGGGGACAAAGAGA  150

seq1  CATTTGGGACCTTTAAAATGAGAAAGGGAAAGGGGTCAAACATGTTTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGGACCTTTAAAATGAGAAAGGGAAAGGGGTCAAACATGTTTGGG  200

seq1  GCTTAATTAATAATAATTAGTATTACTGATAATGGCAGCTAACAGATAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAATTAATAATAATTAGTATTACTGATAATGGCAGCTAACAGATAGC  250

seq1  AAATACTTACTATTTAACACTAAATTAGAGATCTCATTAATCTTCAGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTTACTATTTAACACTAAATTAGAGATCTCATTAATCTTCAGGGC  300

seq1  AATGCAGTGAGGCAGGTGCTATTATCACAGATTTAATTACATGGAAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGTGAGGCAGGTGCTATTATCACAGATTTAATTACATGGAAATAA  350

seq1  AAATGGTTGGGTGGCTATAATACCAAGAACTGAGGCGAATACTTGAAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTTGGGTGGCTATAATACCAAGAACTGAGGCGAATACTTGAAGTC  400

seq1  ACCTGTGACACACCCCATCTCTGTAGCCAGTACACTACAGGGAAGCAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGACACACCCCATCTCTGTAGCCAGTACACTACAGGGAAGCAAAA  450

seq1  GAAGGAACTAAGGAGACAGATCTCCCCTGGGGCTGGGAATGTGGGGAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAACTAAGGAGACAGATCTCCCCTGGGGCTGGGAATGTGGGGAAGT  500

seq1  CCACTGGACTGGGGTAGAAGCTGTAATTATAAAGATATTGGTCTACTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGACTGGGGTAGAAGCTGTAATTATAAAGATATTGGTCTACTCTG  550

seq1  AGGCTACTGAAAAAGAAACGCTACCTTGTTTTGGAAAATGTTCTAGGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTACTGAAAAAGAAACGCTACCTTGTTTTGGAAAATGTTCTAGGAAG  600

seq1  ACCTAGCACAATTTGAACAGTTTTGCTGATATGATTAGTCTTGGCACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGCACAATTTGAACAGTTTTGCTGATATGATTAGTCTTGGCACAGA  650

seq1  CAGCACTTGTGACCTCCCTGCTGGCTCAAACTTGTAATGGACACACAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTTGTGACCTCCCTGCTGGCTCAAACTTGTAATGGACACACAACA  700

seq1  GATGAGTTAGCTGTTGTGTGATGTTCTCTAGGACCACATGACAGCCACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGTTAGCTGTTGTGTGATGTTCTCTAGGACCACATGACAGCCACTC  750

seq1  CAGCTCATGATGGATGGAGCTGCCAACCTCACATGTGCGGTATATGGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCATGATGGATGGAGCTGCCAACCTCACATGTGCGGTATATGGTTT  800

seq1  GTGCTAGGCTGGGCCAGTATTTTCTCTTAAGATCA-TTTTTTTAATCAAA  849
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTGCTAGGCTGGGCCAGTATTTTCTCTTAAGATCATTTTTTTTAATCAAA  850

seq1  TAATGTTTTAATTTTTTGAGAATTTCAAGCAATGCATCAAATCACCCTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTTTAATTTTTTGAGAATTTCAAGCAATGCATCAAATCACCCTGG  900

seq1  CTACCTGAATACCTCCAATATTCACCTCCATTTTTTTTAAATTAGGTATT  949
      |||||||||||||||||||||||||||||||||||||| || ||||||||
seq2  CTACCTGAATACCTCCAATATTCACCTCCATTTTTTTTTAA-TAGGTATT  949

seq1  TTCCTCGTTTACATTTTCAATGCTATCCCAAAGGTCCCCCATACCCACCC  999
      ||||||| |||||||||| |||||||||  ||||| ||||||||| ||||
seq2  TTCCTCG-TTACATTTTC-ATGCTATCC--AAGGT-CCCCATACCAACCC  994

seq1  CCCAATCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCATTCCCCTG  1049
      ||  || |||||||||||||||||||   ||| | | ||||||  |||||
seq2  CC--AT-CCCTACCCACCCACTCCCC---TTTTGTCTTGGCAT--CCCTG  1036

seq1  TACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGC  1094
      |||| ||||||||||||  ||||||| ||||||||||||||||||
seq2  TACT-GGGCATATAAAG-GTGCAAGTTCAATGGGCCTCTCTTTGC  1079


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