BAC Information

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BAC

Clone NameB6Ng01-338E16
Chromosome18 (Build37)
Map Location 66,840,391 - 66,950,509
singlet/doubletdoublet
Overlap genenone
Upstream geneZfp532, 5330437I02Rik, Sec11c, Grp, Rax, Cplx4, Lman1, Ccbe1, Pmaip1, LOC100042852
Downstream geneMc4r, Gnal, Chmp1b, Mppe1, Impa2, B430212C06Rik, Cidea, Tubb6, Afg3l2, Slmo1, Spire1, Cep76, Tnfsf5ip1, Ptpn2, Seh1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338E16.bB6Ng01-338E16.g
ACCGA122642GA122643
length1,128604
definitionB6Ng01-338E16.b B6Ng01-338E16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,949,376 - 66,950,509)(66,840,391 - 66,840,994)
sequence
gaattctacaggtggcaggatttggagcagaagtagatgtcggtgaaaag
gtgagaaaatgtccacaccccacaacaaaacgaaacaaaacaaagcgaaa
acaaaaacatcacatcgaagcctgcctactgctttacaatcagccagctt
ttccttttgtcacctaagaaggagacctgaggtgcaaagacagacaagga
ctgtctctggggaagtgtcactggtgaggccatttgatagagagtgccta
gaagtgaggtctgtcatctatagaacagctttgggaaagagagagaaacc
cacttctcaaccctcaaggcacgggctgctctggagcatgcgcacaaagc
acagcagagcaacattgctgaaacctccaggggttgcgaatgggctcaaa
aatagttagccaatcatggatgaagtcgcatcaggatggaaactaggctg
cacctgatcactttttctctagtcaccctgtggaggaagagctttttttc
ttgtatcctctgtgcccatgatttaattttaacaacctatggcacctttt
tcctccccttcttcctttccaaataactcaccattttttccattttaatt
ttcttatttaaactattgtaaatacttcaaaggtttattataaatataca
ataaagttggtaaattatatagaaatataataggttttaatgaagtgaag
aaactaaagttgcatccatttaggctttttaactcttaatttataaaaca
tgtaaaatcaatggatattttcctaccactctagaaactctacagcaatt
tgcaactaaaacaaatttttgcctatttcaatatagatatcaaagctcat
tttgacaggcttgtactggaaaattgattttttctgcttgcagaccttga
agggagattgccttaaaattatcccatgtcttatcatgttatacaacaga
cggtcattaaaacagatttcttcctttgccctcttatttgacttctttat
ttacagtttggatttcctctttgatgcagagagcaaacattgagctatta
gtcatatttgattatttacagcatgctaaatttagcttttagagatgagt
tcaaacccagtcataaaacaagtactgt
gaattctgcttttctgtcaccttcactaataaagtaattgtgaagatgtg
cccctcatcttgggcactggcactcacagtagtggcctctccattctcca
gggctaggtccaaacttttccttcctttccctgttctgcctcagaagtgt
ctgttcccattctttggcgtactctttcacatgtaagaggcgttctgtaa
ggtttcatcactggcgctgaaatgatgttggagaagacttatctctacca
gctgccgaagcagtgggctcttgcttcacgaggtagaaaagggaaggcta
tcttcaaggccacaaaaattctttacgcagtgatgatgccagaaagaatt
ctccttgattaggattaatccagagtgtgtgtttaagaacgtattagaat
tctttgttgttgtttttttttaactattatttcatttttatgtgcatgca
tgtttgcctgcatatgagtctctgcaccacttgtaaaccttgtgcctgga
gagaccagaggaggccatcagatcgcctggaactagagttacagacaggt
atgcgccaccagttgggatgctaagaatcaaacctgggtcttctgaaaga
atgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_66949376_66950509
seq2: B6Ng01-338E16.b_46_1173 (reverse)

seq1  ACAGTACTTG-TTTATGAACTGGGTTTGAACTTCATCTCTAAAAGCTAAA  49
      |||||||||| |||||| ||||||||||||| ||||||||||||||||||
seq2  ACAGTACTTGTTTTATG-ACTGGGTTTGAAC-TCATCTCTAAAAGCTAAA  48

seq1  TTTAGCATGCTGTAAATAATTCAAATATTGACTAATAGCTCAATGTTTGC  99
      ||||||||||||||||||| ||||||| ||||||||||||||||||||| 
seq2  TTTAGCATGCTGTAAATAA-TCAAATA-TGACTAATAGCTCAATGTTTG-  95

seq1  CTCTCTGCATCAAAGGAGGAAATCCAAACTGTAAAATAAAGAAGTCAAAT  149
      |||||||||||||| ||||||||||||||||| |||||||||||||||||
seq2  CTCTCTGCATCAAA-GAGGAAATCCAAACTGT-AAATAAAGAAGTCAAAT  143

seq1  -AGAGGGCAAAGGAAGAAATCTGTTTTAATGACCGTCTTGTTGTATAACA  198
       |||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAGAGGGCAAAGGAAGAAATCTGTTTTAATGACCGTC-TGTTGTATAACA  192

seq1  TGATAAGACATGGGATAATTTTAAGGCAATCTCCCTTCAAGGTCTGCAAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGACATGGGATAATTTTAAGGCAATCTCCCTTCAAGGTCTGCAAG  242

seq1  CAGAAAAAATCAATTTTCCAGTACAAGCCTGTCAAAATGAGCTTTGATAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAAATCAATTTTCCAGTACAAGCCTGTCAAAATGAGCTTTGATAT  292

seq1  CTATATTGAAATAGGCAAAAATTTGTTTTAGTTGCAAATTGCTGTAGAGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTGAAATAGGCAAAAATTTGTTTTAGTTGCAAATTGCTGTAGAGT  342

seq1  TTCTAGAGTGGTAGGAAAATATCCATTGATTTTACATGTTTTATAAATTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAGTGGTAGGAAAATATCCATTGATTTTACATGTTTTATAAATTA  392

seq1  AGAGTTAAAAAGCCTAAATGGATGCAACTTTAGTTTCTTCACTTCATTAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTAAAAAGCCTAAATGGATGCAACTTTAGTTTCTTCACTTCATTAA  442

seq1  AACCTATTATATTTCTATATAATTTACCAACTTTATTGTATATTTATAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTATTATATTTCTATATAATTTACCAACTTTATTGTATATTTATAAT  492

seq1  AAACCTTTGAAGTATTTACAATAGTTTAAATAAGAAAATTAAAATGGAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTTGAAGTATTTACAATAGTTTAAATAAGAAAATTAAAATGGAAA  542

seq1  AAATGGTGAGTTATTTGGAAAGGAAGAAGGGGAGGAAAAAGGTGCCATAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTGAGTTATTTGGAAAGGAAGAAGGGGAGGAAAAAGGTGCCATAG  592

seq1  GTTGTTAAAATTAAATCATGGGCACAGAGGATACAAGAAAAAAAGCTCTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTAAAATTAAATCATGGGCACAGAGGATACAAGAAAAAAAGCTCTT  642

seq1  CCTCCACAGGGTGACTAGAGAAAAAGTGATCAGGTGCAGCCTAGTTTCCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACAGGGTGACTAGAGAAAAAGTGATCAGGTGCAGCCTAGTTTCCA  692

seq1  TCCTGATGCGACTTCATCCATGATTGGCTAACTATTTTTGAGCCCATTCG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATGCGACTTCATCCATGATTGGCTAACTATTTTTGAGCCCATTCG  742

seq1  CAACCCCTGGAGGTTTCAGCAATGTTGCTCTGCTGTGCTTTGTGCGCATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCTGGAGGTTTCAGCAATGTTGCTCTGCTGTGCTTTGTGCGCATG  792

seq1  CTCCAGAGCAGCCCGTGCCTTGAGGGTTGAGAAGTGGGTTTCTCTCTCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAGCAGCCCGTGCCTTGAGGGTTGAGAAGTGGGTTTCTCTCTCTT  842

seq1  TCCCAAAGCTGTTCTATAGATGACAGACCTCACTTCTAGGCACTCTCTAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAGCTGTTCTATAGATGACAGACCTCACTTCTAGGCACTCTCTAT  892

seq1  CAAATGGCCTCACCAGTGACACTTCCCCAGAGACAGTCCTTGTCTGTCTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGCCTCACCAGTGACACTTCCCCAGAGACAGTCCTTGTCTGTCTT  942

seq1  TGCACCTCAGGTCTCCTTCTTAGGTGACAAAAGGAAAAGCTGGCTGATTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCTCAGGTCTCCTTCTTAGGTGACAAAAGGAAAAGCTGGCTGATTG  992

seq1  TAAAGCAGTAGGCAGGCTTCGATGTGATGTTTTTGTTTTCGCTTTGTTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAGTAGGCAGGCTTCGATGTGATGTTTTTGTTTTCGCTTTGTTTT  1042

seq1  GTTTCGTTTTGTTGTGGGGTGTGGACATTTTCTCACCTTTTCACCGACAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCGTTTTGTTGTGGGGTGTGGACATTTTCTCACCTTTTCACCGACAT  1092

seq1  CTACTTCTGCTCCAAATCCTGCCACCTGTAGAATTC  1134
      ||||||||||||||||||||||||||||||||||||
seq2  CTACTTCTGCTCCAAATCCTGCCACCTGTAGAATTC  1128

seq1: chr18_66840391_66840994
seq2: B6Ng01-338E16.g_67_670

seq1  GAATTCTGCTTTTCTGTCACCTTCACTAATAAAGTAATTGTGAAGATGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTTTTCTGTCACCTTCACTAATAAAGTAATTGTGAAGATGTG  50

seq1  CCCCTCATCTTGGGCACTGGCACTCACAGTAGTGGCCTCTCCATTCTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCATCTTGGGCACTGGCACTCACAGTAGTGGCCTCTCCATTCTCCA  100

seq1  GGGCTAGGTCCAAACTTTTCCTTCCTTTCCCTGTTCTGCCTCAGAAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAGGTCCAAACTTTTCCTTCCTTTCCCTGTTCTGCCTCAGAAGTGT  150

seq1  CTGTTCCCATTCTTTGGCGTACTCTTTCACATGTAAGAGGCGTTCTGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCCATTCTTTGGCGTACTCTTTCACATGTAAGAGGCGTTCTGTAA  200

seq1  GGTTTCATCACTGGCGCTGAAATGATGTTGGAGAAGACTTATCTCTACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCATCACTGGCGCTGAAATGATGTTGGAGAAGACTTATCTCTACCA  250

seq1  GCTGCCGAAGCAGTGGGCTCTTGCTTCACGAGGTAGAAAAGGGAAGGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCGAAGCAGTGGGCTCTTGCTTCACGAGGTAGAAAAGGGAAGGCTA  300

seq1  TCTTCAAGGCCACAAAAATTCTTTACGCAGTGATGATGCCAGAAAGAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAGGCCACAAAAATTCTTTACGCAGTGATGATGCCAGAAAGAATT  350

seq1  CTCCTTGATTAGGATTAATCCAGAGTGTGTGTTTAAGAACGTATTAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGATTAGGATTAATCCAGAGTGTGTGTTTAAGAACGTATTAGAAT  400

seq1  TCTTTGTTGTTGTTTTTTTTTAACTATTATTTCATTTTTATGTGCATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTGTTGTTTTTTTTTAACTATTATTTCATTTTTATGTGCATGCA  450

seq1  TGTTTGCCTGCATATGAGTCTCTGCACCACTTGTAAACCTTGTGCCTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCCTGCATATGAGTCTCTGCACCACTTGTAAACCTTGTGCCTGGA  500

seq1  GAGACCAGAGGAGGCCATCAGATCGCCTGGAACTAGAGTTACAGACAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCAGAGGAGGCCATCAGATCGCCTGGAACTAGAGTTACAGACAGGT  550

seq1  ATGCGCCACCAGTTGGGATGCTAAGAATCAAACCTGGGTCTTCTGAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGCCACCAGTTGGGATGCTAAGAATCAAACCTGGGTCTTCTGAAAGA  600

seq1  ATGT  604
      ||||
seq2  ATGT  604