BAC Information

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BAC

Clone NameB6Ng01-339D01
Chromosome18 (Build37)
Map Location 78,667,521 - 78,777,501
singlet/doubletdoublet
Overlap geneSlc14a2
Upstream geneLoxhd1, Rnf165, 8030462N17Rik, 4930465K10Rik, Ccdc5, Atp5a1, Pstpip2, 5430411K18Rik, Cd33l3, Slc14a1, EG620155
Downstream geneSetbp1, LOC100039242, LOC100039250
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339D01.bB6Ng01-339D01.g
ACCGA123256GA123257
length1,1101,124
definitionB6Ng01-339D01.b B6Ng01-339D01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,776,373 - 78,777,501)(78,667,521 - 78,668,670)
sequence
gaattctctaaggaatctcactgcttcaaagaagtatttattttccaagg
acatctgaattctgaatcatgtttcgttgttatttttgtagtactttgaa
atgttcatattaaaacaagataaaatgtttaagaaggtggcagagatcag
agcatccgagactgtaaaatctcagttccttttgagttgggctgagtgaa
ttgtaatccacagacaaataaatttgcctcaattttcccatttcaggaca
aaagcatttatatttagtcagagtattcatttgatactttctgaagaatt
ctttcgctgcgctcaagtgtttgtctacataaagaacttggaaaaaattg
atgcagtaaataatttcaataccggttgtctgcttttattgtggaaagca
cggttatgttatttaaataaatttatttaaataaaatgctgtttaaataa
agatttctcctaatcctttggctctttggaggaagaagtatatggacgca
gttaaggcctttgttagaagcaagttcagtgcagaatacagttactaacc
ctggaacccaaagtgagagaacatgatgaccatgggaaggagatgggtgg
aagaaaatcctcaaggttcaggggaaacactcacgctctgggagaaaggc
acatttgcaaaagaccaaagagcaacaaaacacacacacacacacacaca
cacgcgcgcacgcacacacacacgcacacacacagtaatgccctgatttt
gtcttttcacatctatttttcttttgagttttaaccttaatttccccaaa
tttccagaacatatacctttagtttgcttttgagtaagcaatatagttat
tatctacaagaaaacagaatgcattagcaactaaactgcagaatggagaa
aattctttaagtggaatatagtaaatgaatattgacggaggaagaccaca
gagaggaaagctaccaaattagtaaaattcaaatatcataaaccaggagc
catccaagtgagacatctccaagccggctgcgtacagtgaacattgagtc
ctcagatcagagcaggttaaatagtcacattacttgactcttctgatgac
aggtttataa

gaattctttcagcagaaattaaatcaaagcatttaaatttttatcagata
cacaccactctcccccctcctcttttcttccatgaaaattgagaaagtag
gaatccaattaccaaggcgagataaaaaggagagatagtaaaacatttta
attggatggcagagatgcctaatcgtagtgccgactctgttctctgggca
tcacagcatcgctatgtggtcacaggagacaggtacagtaagaaggcaca
ggggggatgggctttatcccagagctttccgtcggtggccacctccatcc
cagctggatggcagtccctagcacctacctgcagacaacccaaaccaaca
cactggcaggcagaatgcaccccaaacaaaaagccttacctcctctgtaa
tttatttcaaatgtggattctcagagcctaagaggggctgacaggaagtg
acttagagtgtgtaggcagctatgaaagcttccctcgctgttgggtcaga
acttctctcagaaaacccacagtgaatcaaaagttttcagtaaacccaaa
gggacagagctaagagcattggctcaggtagggagagtaaagtctgcctg
tggctgggctcaggtttgaggtctgtgttctgttttccccctccctccag
ttcttcctgactcaggaactcagcgggttgtgcaggataggaacaataat
cccgagcttgtaatttaggtgacaatgaaagactgacccaaggcctggct
taatacatgtatagattagaaaggcctgaagtttcttgcttcagaattac
gttatagccaggagttggtttagaagtcatggctgttcaccagaaacaga
acttgagtttcaacaagtcctggcttcctgggaggagtccagtttgtgac
tatttctacagatccagttcattactgagacttgccagattgccttttgt
atacttatacgtgactctccatctttatccagccagattctgccgttcat
atgcacgttttttccctatagaatacctgcactcatctttcctaggaact
cagcatccatgacttctcaaaccgttccagtttcaggcatactccagata
gcttgacttctgcttatctcagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_78776373_78777501
seq2: B6Ng01-339D01.b_48_1157 (reverse)

seq1  TTATAAAAACTGGTCATCAGAAGAGTCAAAGTTATGTGACTATTTTACCT  50
      ||||  ||||  ||||||||||||||| |||| |||||||||||| ||||
seq2  TTAT--AAACCTGTCATCAGAAGAGTC-AAGTAATGTGACTATTTAACCT  47

seq1  TGGCTCCTTGATCTGA-GACTCCAAATGTTCACTGTACGCAAGCCCGGGC  99
        ||||  |||||||| |||||  |||||||||||||||| ||||   | 
seq2  --GCTC--TGATCTGAGGACTC--AATGTTCACTGTACGC-AGCC---GG  87

seq1  CTTGGAGATTGTTCTTCAACCTTGGATGGCTTCCTGGTTTATTGATATTT  149
      |||||||| |||   |||  |||||||||| |||||||||| ||||||||
seq2  CTTGGAGA-TGT--CTCA--CTTGGATGGC-TCCTGGTTTA-TGATATTT  130

seq1  GAATTTTACTAA-TTGGTAGCTTTTCCTCTCTGTGGTCTTCCTCCGTCAA  198
      |||||||||||| |||||||| ||||||||||||||||||||||||||||
seq2  GAATTTTACTAATTTGGTAGC-TTTCCTCTCTGTGGTCTTCCTCCGTCAA  179

seq1  TATTCATTTACTATATTCCACTTAAAGAATTTTCTCCATTCTGCAGTTTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTTACTATATTCCACTTAAAGAATTTTCTCCATTCTGCAGTTTA  229

seq1  GTTGCTAATGCATTCTGTTTTCTTGTAGATAATAACTATATTGCTTACTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTAATGCATTCTGTTTTCTTGTAGATAATAACTATATTGCTTACTC  279

seq1  AAAAGCAAACTAAAGGTATATGTTCTGGAAATTTGGGGAAATTAAGGTTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAAACTAAAGGTATATGTTCTGGAAATTTGGGGAAATTAAGGTTA  329

seq1  AAACTCAAAAGAAAAATAGATGTGAAAAGACAAAATCAGGGCATTACTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAAAAGAAAAATAGATGTGAAAAGACAAAATCAGGGCATTACTGT  379

seq1  GTGTGTGCGTGTGTGTGTGCGTGCGCGCGTGTGTGTGTGTGTGTGTGTGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCGTGTGTGTGTGCGTGCGCGCGTGTGTGTGTGTGTGTGTGTGT  429

seq1  GTTTTGTTGCTCTTTGGTCTTTTGCAAATGTGCCTTTCTCCCAGAGCGTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTGCTCTTTGGTCTTTTGCAAATGTGCCTTTCTCCCAGAGCGTG  479

seq1  AGTGTTTCCCCTGAACCTTGAGGATTTTCTTCCACCCATCTCCTTCCCAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTCCCCTGAACCTTGAGGATTTTCTTCCACCCATCTCCTTCCCAT  529

seq1  GGTCATCATGTTCTCTCACTTTGGGTTCCAGGGTTAGTAACTGTATTCTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATCATGTTCTCTCACTTTGGGTTCCAGGGTTAGTAACTGTATTCTG  579

seq1  CACTGAACTTGCTTCTAACAAAGGCCTTAACTGCGTCCATATACTTCTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAACTTGCTTCTAACAAAGGCCTTAACTGCGTCCATATACTTCTTC  629

seq1  CTCCAAAGAGCCAAAGGATTAGGAGAAATCTTTATTTAAACAGCATTTTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAGAGCCAAAGGATTAGGAGAAATCTTTATTTAAACAGCATTTTA  679

seq1  TTTAAATAAATTTATTTAAATAACATAACCGTGCTTTCCACAATAAAAGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATAAATTTATTTAAATAACATAACCGTGCTTTCCACAATAAAAGC  729

seq1  AGACAACCGGTATTGAAATTATTTACTGCATCAATTTTTTCCAAGTTCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACCGGTATTGAAATTATTTACTGCATCAATTTTTTCCAAGTTCTT  779

seq1  TATGTAGACAAACACTTGAGCGCAGCGAAAGAATTCTTCAGAAAGTATCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGACAAACACTTGAGCGCAGCGAAAGAATTCTTCAGAAAGTATCA  829

seq1  AATGAATACTCTGACTAAATATAAATGCTTTTGTCCTGAAATGGGAAAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATACTCTGACTAAATATAAATGCTTTTGTCCTGAAATGGGAAAAT  879

seq1  TGAGGCAAATTTATTTGTCTGTGGATTACAATTCACTCAGCCCAACTCAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAAATTTATTTGTCTGTGGATTACAATTCACTCAGCCCAACTCAA  929

seq1  AAGGAACTGAGATTTTACAGTCTCGGATGCTCTGATCTCTGCCACCTTCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACTGAGATTTTACAGTCTCGGATGCTCTGATCTCTGCCACCTTCT  979

seq1  TAAACATTTTATCTTGTTTTAATATGAACATTTCAAAGTACTACAAAAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATTTTATCTTGTTTTAATATGAACATTTCAAAGTACTACAAAAAT  1029

seq1  AACAACGAAACATGATTCAGAATTCAGATGTCCTTGGAAAATAAATACTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACGAAACATGATTCAGAATTCAGATGTCCTTGGAAAATAAATACTT  1079

seq1  CTTTGAAGCAGTGAGATTCCTTAGAGAATTC  1129
      |||||||||||||||||||||||||||||||
seq2  CTTTGAAGCAGTGAGATTCCTTAGAGAATTC  1110


seq1: chr18_78667521_78668670
seq2: B6Ng01-339D01.g_66_1189

seq1  GAATTCTTTCAGCAGAAATTAAATCAAAGCATTTAAATTTTTATCAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAGCAGAAATTAAATCAAAGCATTTAAATTTTTATCAGATA  50

seq1  CACACCACTCTCCCCCCTCCTCTTTTCTTCCATGAAAATTGAGAAAGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCACTCTCCCCCCTCCTCTTTTCTTCCATGAAAATTGAGAAAGTAG  100

seq1  GAATCCAATTACCAAGGCGAGATAAAAAGGAGAGATAGTAAAACATTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCAATTACCAAGGCGAGATAAAAAGGAGAGATAGTAAAACATTTTA  150

seq1  ATTGGATGGCAGAGATGCCTAATCGTAGTGCCGACTCTGTTCTCTGGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATGGCAGAGATGCCTAATCGTAGTGCCGACTCTGTTCTCTGGGCA  200

seq1  TCACAGCATCGCTATGTGGTCACAGGAGACAGGTACAGTAAGAAGGCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCATCGCTATGTGGTCACAGGAGACAGGTACAGTAAGAAGGCACA  250

seq1  GGGGGGATGGGCTTTATCCCAGAGCTTTCCGTCGGTGGCCACCTCCATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGATGGGCTTTATCCCAGAGCTTTCCGTCGGTGGCCACCTCCATCC  300

seq1  CAGCTGGATGGCAGTCCCTAGCACCTACCTGCAGACAACCCAAACCAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGATGGCAGTCCCTAGCACCTACCTGCAGACAACCCAAACCAACA  350

seq1  CACTGGCAGGCAGAATGCACCCCAAACAAAAAGCCTTACCTCCTCTGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCAGGCAGAATGCACCCCAAACAAAAAGCCTTACCTCCTCTGTAA  400

seq1  TTTATTTCAAATGTGGATTCTCAGAGCCTAAGAGGGGCTGACAGGAAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCAAATGTGGATTCTCAGAGCCTAAGAGGGGCTGACAGGAAGTG  450

seq1  ACTTAGAGTGTGTAGGCAGCTATGAAAGCTTCCCTCGCTGTTGGGTCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGAGTGTGTAGGCAGCTATGAAAGCTTCCCTCGCTGTTGGGTCAGA  500

seq1  ACTTCTCTCAGAAAACCCACAGTGAATCAAAAGTTTTCAGTAAACCCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCTCAGAAAACCCACAGTGAATCAAAAGTTTTCAGTAAACCCAAA  550

seq1  GGGACAGAGCTAAGAGCATTGGCTCAGGTAGGGAGAGTAAAGTCTGCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGAGCTAAGAGCATTGGCTCAGGTAGGGAGAGTAAAGTCTGCCTG  600

seq1  TGGCTGGGCTCAGGTTTGAGGTCTGTGTTCTGTTTTCCCCCTCCCTCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGGCTCAGGTTTGAGGTCTGTGTTCTGTTTTCCCCCTCCCTCCAG  650

seq1  TTCTTCCTGACTCAGGAACTCAGCGGGTTGTGCAGGATAGGAACAATAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTGACTCAGGAACTCAGCGGGTTGTGCAGGATAGGAACAATAAT  700

seq1  CCCGAGCTTGTAATTTAGGTGACAATGAAAGACTGACCCAAGGCCTGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGCTTGTAATTTAGGTGACAATGAAAGACTGACCCAAGGCCTGGCT  750

seq1  TAATACATGTATAGATTAG-AAGGCCTGAAGTTTCTTGCTTCAGAATTAC  799
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TAATACATGTATAGATTAGAAAGGCCTGAAGTTTCTTGCTTCAGAATTAC  800

seq1  GTTATAGCCAGGAGTTGGTTTAGAAGTCATGGCTGTTCACCAGAAACAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAGCCAGGAGTTGGTTTAGAAGTCATGGCTGTTCACCAGAAACAGA  850

seq1  ACTTGAGTTTCAACAAGTCCTGGCTTCCTGGGAGGAGGTCCAGTTTGTGA  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACTTGAGTTTCAACAAGTCCTGGCTTCCTGGGAGGA-GTCCAGTTTGTGA  899

seq1  CTATTTCTACAGATCCAGTTCATTACTGAGACTTGCCAGATTGCCCTTTT  949
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTATTTCTACAGATCCAGTTCATTACTGAGACTTGCCAGATTG-CCTTTT  948

seq1  GTATAACTTTAATTACGGTGACTCTCCATC-TTATCCAGCCAGATTCTGG  998
      |||| ||||    ||| ||||||||||||| |||||||||||||||||| 
seq2  GTAT-ACTT---ATAC-GTGACTCTCCATCTTTATCCAGCCAGATTCTGC  993

seq1  CGTTCATATGCACCTTTTTTTCCCCTATAGAATA-CTGCACTCATCTTTT  1047
      ||||||||||||| ||||||  |||||||||||| |||||||||||||| 
seq2  CGTTCATATGCACGTTTTTT--CCCTATAGAATACCTGCACTCATCTTTC  1041

seq1  CTAGGACTCCCAGCATCCCCTTGGCTTCTCTCAAACACGTTTCACATTTC  1097
      ||||||  | ||||||  || || ||  |||||||| |||| ||  ||||
seq2  CTAGGA-ACTCAGCAT--CCATGACT--TCTCAAAC-CGTTCCA-GTTTC  1084

seq1  AGCCCAAATAACTCCACAGAATTTAGCTCTGACCTTTCTGTCTTATCTCA  1147
      || |   || |||||| |     ||||| ||||  ||||| |||||||||
seq2  AGGC---AT-ACTCCAGA-----TAGCT-TGAC--TTCTG-CTTATCTCA  1121

seq1  GTT  1150
      |||
seq2  GTT  1124


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