BAC Information

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BAC

Clone NameB6Ng01-341H03
Chromosome18 (Build37)
Map Location 36,532,230 - 36,672,938
singlet/doubletdoublet
Overlap gene0610010O12Rik, Pfdn1, Hbegf
Upstream geneSil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131, Psd2, LOC100042150, LOC100041531, Pura
Downstream geneSlc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341H03.bB6Ng01-341H03.g
ACCGA124824GA124825
length9871,146
definitionB6Ng01-341H03.b B6Ng01-341H03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,532,230 - 36,533,220)(36,671,771 - 36,672,938)
sequence
gttgtgttaagacatggtctttctttgtagccaaggctagcctcctcctg
attgagcttactggtgtgaggcatagctcctggctaagaaccacaagtgt
tgacttaaaaacagagggctctgatttcaagctaagcacataacctcctt
gtgctctgctacgaagatccagcacagatttgccagaaattctgaaacac
ccaccaaaggaaaatattctttcagctttttctctttctttatccctcac
agcacaaacaaatgaaataaaattatctagtaattataataggctagtag
ttttctcctcctcttcttcttccttctcttcccccttttcctcctcatct
tcctcctttttgtccccctttttttttcttttttgagacaggatctcact
atgtagccctagctggccttgaactcacagagatccacctgcctctgcct
tctaggtgctgggattaaaggcctgcgccaccacatatttgcttccaggc
aagtttcttagcctccctggtctttgactgtccccacctccctttggaaa
tctcataaaggcagtttcttctcttttgtctcttctagtagagtgctgag
tgcttggtatacacacacacacacacagacacacacagacacacacacac
agagagagacagacacagagagagagacacacacacacacagacacacac
atacacacacacacacagagacacacacacgtatgtagaactgacatgca
tgtatatacactctatacatatgtattgggtgaatggaaatgtttcaaaa
agtggctgtgaatttcgtagttatgtgggcccctcccactctctctttga
gatcctttccttgctttttagccacaagacctggtttatcatagtggtcc
tagacaggactatggtatctggcaaattacggatttaaatgatttctact
tacggcgctggcctttgggatggccacgtgaagctac
gaattccagagaagaggtttccaatcgatagacactcttatcttagaagc
gtcctacccccaaacagccatgttccttctcccaaagcaatttttgtctg
tgacacagtcttcctgcaagtgggtcactgagtacaggaccaggaaatga
ggctgactgagggttacaatagaatggagctcgtgggagatcacagagag
agggtagaaagccggcagagccaggctgatagctttgcgctgtgacctgc
agttactctggctttcttagaacaaagcccttcttccttgggacctaacc
taacctctatttcctctttaaagtttcctctttctggtggttcttaaaga
gtttgttcccaggcctctgacttcaggtgggaccaaagagtgtgtgcacc
ctcaacagttttgggggtatccgcctgtaattccatgatccagatgctgg
ggtgggtgaaatgggaatctgagatcagcctggctcatatttggagatgc
ctttgcagagggacggagtagaaatgctcaccagaactgttttcctgcag
ttgctttctcctccaagccacaaggcctggccaccccaagcaaagaaagg
aatgggaaaaagaagaagaaaggaaaggggttagggaagaagagagaccc
atgcctcaggaaatacaaggactactgcatccacggggagtgcagatacc
tgcaggagttccgtactccctcttgcaagtaagtgctccactcccacaag
gaatctcattgtcacactgccagccacatgttctgtttgtcactgttcct
tgaattcataatgtcacccagtttcttttcacctctgggaggaagttcaa
ggaagggacatatttttagtcagcggaagtccccgccaccgccaccacca
ccaccaccaccaccaccatcatttcctgtggcatggggttgtgacttctc
tcaatctttcaggacatttccccttgcatcctatagatgagtgtgtgccc
atgagagggggtcactgggagagggcctggtctgggtcctgggtcctggt
ctgagacttctctgaaggaagctgttagaaccagcagattggtttcccgt
cactgaatgagtacataagtcacatgctgtgtgggtgcgataccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_36532230_36533220
seq2: B6Ng01-341H03.b_54_1040

seq1  GTTGTGTTAAGACATGGTCTTTCTTTGTAGCCAAGGCTAGCCTCCTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTTAAGACATGGTCTTTCTTTGTAGCCAAGGCTAGCCTCCTCCTG  50

seq1  ATTGAGCTTACTGGTGTGAGGCATAGCTCCTGGCTAAGAACCACAAGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGCTTACTGGTGTGAGGCATAGCTCCTGGCTAAGAACCACAAGTGT  100

seq1  TGACTTAAAAACAGAGGGCTCTGATTTCAAGCTAAGCACATAACCTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTAAAAACAGAGGGCTCTGATTTCAAGCTAAGCACATAACCTCCTT  150

seq1  GTGCTCTGCTACGAAGATCCAGCACAGATTTGCCAGAAATTCTGAAACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTGCTACGAAGATCCAGCACAGATTTGCCAGAAATTCTGAAACAC  200

seq1  CCACCAAAGGAAAATATTCTTTCAGCTTTTTCTCTTTCTTTATCCCTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAAAGGAAAATATTCTTTCAGCTTTTTCTCTTTCTTTATCCCTCAC  250

seq1  AGCACAAACAAATGAAATAAAATTATCTAGTAATTATAATAGGCTAGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAAACAAATGAAATAAAATTATCTAGTAATTATAATAGGCTAGTAG  300

seq1  TTTTCTCCTCCTCTTCTTCTTCCTTCTCTTCCCCCTTTTCCTCCTCATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCCTCCTCTTCTTCTTCCTTCTCTTCCCCCTTTTCCTCCTCATCT  350

seq1  TCCTCCTTTTTGTCCCCCTTTTTTTTTCTTTTTTGAGACAGGATCTCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTTTTTGTCCCCCTTTTTTTTTCTTTTTTGAGACAGGATCTCACT  400

seq1  ATGTAGCCCTAGCTGGCCTTGAACTCACAGAGATCCACCTGCCTCTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCCCTAGCTGGCCTTGAACTCACAGAGATCCACCTGCCTCTGCCT  450

seq1  TCTAGGTGCTGGGATTAAAGGCCTGCGCCACCACATATTTGCTTCCAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGTGCTGGGATTAAAGGCCTGCGCCACCACATATTTGCTTCCAGGC  500

seq1  AAGTTTCTTAGCCTCCCTGGTCTTTGACTGTCCCCACCTCCCTTTGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCTTAGCCTCCCTGGTCTTTGACTGTCCCCACCTCCCTTTGGAAA  550

seq1  TCTCATAAAGGCAGTTTCTTCTCTTTTGTCTCTTCTAGAAGAGTGCTGAG  600
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCTCATAAAGGCAGTTTCTTCTCTTTTGTCTCTTCTAGTAGAGTGCTGAG  600

seq1  TGCTTGGTATACACACACACACACACAGACACACACAGACACACACACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGTATACACACACACACACACAGACACACACAGACACACACACAC  650

seq1  AGAGAGAGACAGACACAGAGAGAGAGACACACACACACACAGACACACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGACAGACACAGAGAGAGAGACACACACACACACAGACACACAC  700

seq1  ATACACACACACACACAGAGACACACACACGTATGTAGAACTGACATGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACACACACAGAGACACACACACGTATGTAGAACTGACATGCA  750

seq1  TGTATATACACTCTATACATATGTATTGGGTGAATGGAAATGTTTCAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATACACTCTATACATATGTATTGGGTGAATGGAAATGTTTCAAAA  800

seq1  AGTGGCTGTGAATTTGTTAGTTATGTGGGCCCCTCCCCACTCTCTCTTTG  850
      |||||||||||||||  ||||||||||||||||| |||||||||||||||
seq2  AGTGGCTGTGAATTTCGTAGTTATGTGGGCCCCT-CCCACTCTCTCTTTG  849

seq1  AGATCCTTTCCTTGCTTTTTAGCCACAAGACCTGGTTTTATACATAGTGT  900
      ||||||||||||||||||||||||||||||||||| ||||| ||||||| 
seq2  AGATCCTTTCCTTGCTTTTTAGCCACAAGACCTGG-TTTAT-CATAGTGG  897

seq1  TCTAGGACAGGACTATGGTATCTGGCAAAATACGGATTTAAAATGAATTC  950
      ||   |||||||||||||||||||||||| ||||||||| |||||| |||
seq2  TCCTAGACAGGACTATGGTATCTGGCAAATTACGGATTT-AAATGATTTC  946

seq1  TACTTACGGCGCTGTCCTTTGGGATGCCCACGTGGAGCTAC  991
      |||||||||||||| ||||||||||| ||||||| ||||||
seq2  TACTTACGGCGCTGGCCTTTGGGATGGCCACGTGAAGCTAC  987

seq1: chr18_36671771_36672938
seq2: B6Ng01-341H03.g_66_1211 (reverse)

seq1  TGGGTATACGCACCCACACAGCATGTGACTTATGTCGCCTCCTATCAGCT  50
      ||||||| |||||||||||||||||||||||||||   ||| | |||| |
seq2  TGGGTAT-CGCACCCACACAGCATGTGACTTATGT--ACTCAT-TCAG-T  45

seq1  GCCGGGAAACCAATCTGCTGTGTTTCCTAACAGCTTTCCTTTCCAGAGAA  100
      | |||||||||||||||||| |||  |||||||| ||||||  |||||||
seq2  GACGGGAAACCAATCTGCTG-GTT--CTAACAGC-TTCCTT--CAGAGAA  89

seq1  GTCTCCAGGACCCAGGACCCAGGACCCAGGACCCAGGGCCCTCCTTCCCA  150
      |||| |||   ||||||||||||||||| ||||   |||||||  |||||
seq2  GTCT-CAG--ACCAGGACCCAGGACCCA-GACC--AGGCCCTC--TCCCA  131

seq1  GGTGCCCCCTCTCATGGGCACACACTCATCTATAAGGATGCAGGGGGAAA  200
      |   ||||||||||||||||||||||||||||| |||||||| |||||||
seq2  GTGACCCCCTCTCATGGGCACACACTCATCTAT-AGGATGCAAGGGGAAA  180

seq1  TGTCCTGAAGGATTGAGGAGAGTCACAACCCCATGCCACAGGAAATGATG  250
      ||||||||| |||||||   ||||||||||||||||||||||||||||||
seq2  TGTCCTGAAAGATTGAGAGAAGTCACAACCCCATGCCACAGGAAATGATG  230

seq1  GTGGTGGTGGTGGTGGTGGTGGTGGCGGTGGCGGGGACTTCCGCTGACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGTGGTGGTGGTGGTGGTGGCGGTGGCGGGGACTTCCGCTGACTA  280

seq1  AAAATATGTCCCTTCCTTTGAACTTCCTCCCAGAGGTTGAAAAGAAACTG  350
      |||||||||||||||| ||||||||||||||||||| |||||||||||||
seq2  AAAATATGTCCCTTCC-TTGAACTTCCTCCCAGAGG-TGAAAAGAAACTG  328

seq1  GGTGACATTATGAATTCAAGGAACAGTGACAAACAGAACATGTGGCTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACATTATGAATTCAAGGAACAGTGACAAACAGAACATGTGGCTGGC  378

seq1  AGTGTGACAATGAGATTCCTTGTGGGAGTGGAGCACTTACTTGCAAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGACAATGAGATTCCTTGTGGGAGTGGAGCACTTACTTGCAAGAGG  428

seq1  GAGTACGGAACTCCTGCAGGTATCTGCACTCCCCGTGGATGCAGTAGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACGGAACTCCTGCAGGTATCTGCACTCCCCGTGGATGCAGTAGTCC  478

seq1  TTGTATTTCCTGAGGCATGGGTCTCTCTTCTTCCCTAACCCCTTTCCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTTCCTGAGGCATGGGTCTCTCTTCTTCCCTAACCCCTTTCCTTT  528

seq1  CTTCTTCTTTTTCCCATTCCTTTCTTTGCTTGGGGTGGCCAGGCCTTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTTTTTCCCATTCCTTTCTTTGCTTGGGGTGGCCAGGCCTTGTG  578

seq1  GCTTGGAGGAGAAAGCAACTGCAGGAAAACAGTTCTGGTGAGCATTTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGAGGAGAAAGCAACTGCAGGAAAACAGTTCTGGTGAGCATTTCTA  628

seq1  CTCCGTCCCTCTGCAAAGGCATCTCCAAATATGAGCCAGGCTGATCTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTCCCTCTGCAAAGGCATCTCCAAATATGAGCCAGGCTGATCTCAG  678

seq1  ATTCCCATTTCACCCACCCCAGCATCTGGATCATGGAATTACAGGCGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCATTTCACCCACCCCAGCATCTGGATCATGGAATTACAGGCGGAT  728

seq1  ACCCCCAAAACTGTTGAGGGTGCACACACTCTTTGGTCCCACCTGAAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCAAAACTGTTGAGGGTGCACACACTCTTTGGTCCCACCTGAAGTC  778

seq1  AGAGGCCTGGGAACAAACTCTTTAAGAACCACCAGAAAGAGGAAACTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCTGGGAACAAACTCTTTAAGAACCACCAGAAAGAGGAAACTTTA  828

seq1  AAGAGGAAATAGAGGTTAGGTTAGGTCCCAAGGAAGAAGGGCTTTGTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAATAGAGGTTAGGTTAGGTCCCAAGGAAGAAGGGCTTTGTTCT  878

seq1  AAGAAAGCCAGAGTAACTGCAGGTCACAGCGCAAAGCTATCAGCCTGGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGCCAGAGTAACTGCAGGTCACAGCGCAAAGCTATCAGCCTGGCT  928

seq1  CTGCCGGCTTTCTACCCTCTCTCTGTGATCTCCCACGAGCTCCATTCTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGGCTTTCTACCCTCTCTCTGTGATCTCCCACGAGCTCCATTCTAT  978

seq1  TGTAACCCTCAGTCAGCCTCATTTCCTGGTCCTGTACTCAGTGACCCACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACCCTCAGTCAGCCTCATTTCCTGGTCCTGTACTCAGTGACCCACT  1028

seq1  TGCAGGAAGACTGTGTCACAGACAAAAATTGCTTTGGGAGAAGGAACATG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGAAGACTGTGTCACAGACAAAAATTGCTTTGGGAGAAGGAACATG  1078

seq1  GCTGTTTGGGGGTAGGACGCTTCTAAGATAAGAGTGTCTATCGATTGGAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTGGGGGTAGGACGCTTCTAAGATAAGAGTGTCTATCGATTGGAA  1128

seq1  ACCTCTTCTCTGGAATTC  1168
      ||||||||||||||||||
seq2  ACCTCTTCTCTGGAATTC  1146