BAC Information

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BAC

Clone NameB6Ng01-341J11
Chromosome18 (Build37)
Map Location 51,358,383 - 51,532,632
singlet/doubletdoublet
Overlap genePrr16
Upstream geneLOC667233, Gm93, Hdhd1a, LOC100042373, LOC100042385
Downstream geneEG240289, Ftmt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341J11.bB6Ng01-341J11.g
ACCGA124930GA124931
length9091,162
definitionB6Ng01-341J11.b B6Ng01-341J11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,358,383 - 51,359,505)(51,531,455 - 51,532,632)
sequence
gaattccatcacacatttcaagacctagtacttatattctcaaagctcaa
tcctgctaaaaatctcattctatttcattgttttgagcattgggcttgtt
atacttgcaattaaacttacaattatatcatgcttggatttcttttacag
tattttgacatttcaatttatttcaaatggtcctgctccccctgaatttt
gacaatgttgaattgcacatcacacatggatcacagagaattctattatg
tgagaacatagtacggctgattaggatgtatcctctattatgctccccag
attgtcataaaaacatttcattacctcattttcctgatttttatatattg
tgctgatgtttattctaaagaaaattctggaacttttggccttaaactct
tcaatagtatctttgaaataggagtgtaattcatgaatgtaaatatcttt
tgacagtgatttaagatatggttatctaaatgtatgaaaaaacaagatct
ggagaagcattgaacagagagtagtaaatattcgttgtctgtacacatat
gaggcccccagttttgataggtagcagccatgcacacaattgtatcttac
agagcagtgtcagaaatcagagacaggtgacctggaggctcagtgacaac
cagtctggaagaaacagggagttctcagttttgggaaaaactctgtctca
taaaataatggtagacatctgatgctcgtgagcctctggcttctacacgg
ggctttgcatatgagggtgtttgcacacacctatacatattcataataac
ataagtagcagaggatggcttatgggaagagaggtccttggtcctatgaa
ggctcgatagatgcccagtgtaggggaatcaagagtgaggaggtgggagt
ggggtgggt

gaattccaccaagtaagagccacatgggcttaatgttatctctgaactcc
ccctttcttctaaaagttcagtgaaactaatttcccaccaaaagagagaa
ctcaaatagaaagtcattatgaataaaaagaataataggacataaaatta
tatctgggagtaaaagcccagtagagaaggatatgctagagatgaaaact
caactctcatctattcaaagcaaaaaaatatctcacaaaatgacagagtg
atgaataaacccacacagatcagaaacagaagcatttgaaacggcatgat
aggaactgagaataaactgtaatttcaactaaaaattaatatagaagaac
aaagtatcacaaatacacaatgcataagaaaatagatcttaaaaggtgaa
aatctgagaactaaaaagaaggaaaaagctaggccactacctaaagtaag
aaatataatgattataacaaaaagctagcacataatccgtccatcactgg
aaaataaagtaacaagctgcatccagcatagctctgtcctggaaacttca
ctaaagcagcaagcaaatgagaaaaaggacagactcacagacacacatcc
agaaaaatcaggggtcaaggggctgtctaatgaagcccctactaccaact
actcaaacacaccagagcctcgggggtctatagtgtatgacacagagaga
agggcttagctagtctcaggagaaggtttttgtactggtttgaatatgct
tgaaccagggagtggcactacttgaggtgtggccttgttgtgactttgtg
ggtgggctttgagatcctcctcctagctgcctgaggatttcagtcatttt
ctggctgcagttggatcaagatcttgaactctcagctccttctccagcac
catgtctgcctggatgctgccatgctttctgccttgataaaatggactga
acctctaaaactgtaagcaagccccaattatatgttgtcctttaaagagt
tgacttggtgtgtatctcttcagacatggaattctaactagatagtccta
taggtgagcaatcttttgctgtaatacctcgatgatggactacaggtgga
tactttgagtactgatcagtcctatctaaccttattcatgacagaagagg
cctttgccattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_51358383_51359505
seq2: B6Ng01-341J11.b_47_955

seq1  GAATTCCATCACACATTTCAAGACCTAGTACTTATATTCTCAAAGCTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCACACATTTCAAGACCTAGTACTTATATTCTCAAAGCTCAA  50

seq1  TCCTGCTAAAAATCTCATTCTATTTCATTGTTTTGAGCATTGGGCTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTAAAAATCTCATTCTATTTCATTGTTTTGAGCATTGGGCTTGTT  100

seq1  ATACTTGCAATTAAACTTACAATTATATCATGCTTGGATTTCTTTTACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGCAATTAAACTTACAATTATATCATGCTTGGATTTCTTTTACAG  150

seq1  TATTTTGACATTTCAATTTATTTCAAATGGTCCTGCTCCCCCTGAATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGACATTTCAATTTATTTCAAATGGTCCTGCTCCCCCTGAATTTT  200

seq1  GACAATGTTGAATTGCACATCACACATGGATCACAGAGAATTCTATTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGTTGAATTGCACATCACACATGGATCACAGAGAATTCTATTATG  250

seq1  TGAGAACATAGTACGGCTGATTAGGATGTATCCTCTATTATGCTCCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACATAGTACGGCTGATTAGGATGTATCCTCTATTATGCTCCCCAG  300

seq1  ATTGTCATAAAAACATTTCATTACCTCATTTTCCTGATTTTTATATATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCATAAAAACATTTCATTACCTCATTTTCCTGATTTTTATATATTG  350

seq1  TGCTGATGTTTATTCTAAAGAAAATTCTGGAACTTTTGGCCTTAAACTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATGTTTATTCTAAAGAAAATTCTGGAACTTTTGGCCTTAAACTCT  400

seq1  TCAATAGTATCTTTGAAATAGGAGTGTAATTCATGAATGTAAATATCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAGTATCTTTGAAATAGGAGTGTAATTCATGAATGTAAATATCTTT  450

seq1  TGACAGTGATTTAAGATATGGTTATCTAAATGTATGAAAAAACAAGATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTGATTTAAGATATGGTTATCTAAATGTATGAAAAAACAAGATCT  500

seq1  GGAGAAGCATTGAACAGAGAGTAGTAAATATTCGTTGTCTGTACACATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGCATTGAACAGAGAGTAGTAAATATTCGTTGTCTGTACACATAT  550

seq1  GAGGCCCCCAGTTTTGATAGGTAGCAGCCATGCACACAATTGTATCTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCCCAGTTTTGATAGGTAGCAGCCATGCACACAATTGTATCTTAC  600

seq1  AGAGCAGTGTCAGAAATCAGAGACAGGTGACCTGGAGGCTCAGTGACAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGTGTCAGAAATCAGAGACAGGTGACCTGGAGGCTCAGTGACAAC  650

seq1  CAGTCTGGAAGAAACAGGGAGTTCTCAGTTTTGGGAAAAACTCTGTCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGGAAGAAACAGGGAGTTCTCAGTTTTGGGAAAAACTCTGTCTCA  700

seq1  TAAAATAATGGTAGACATCTGATGCTCGTGAGCCTCTGGCTTCTACACGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAATGGTAGACATCTGATGCTCGTGAGCCTCTGGCTTCTACACGG  750

seq1  GGCTTTGCATATGAGGGTGTTTGCACACACCTATACATATTCATAATAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGCATATGAGGGTGTTTGCACACACCTATACATATTCATAATAAC  800

seq1  ATAAGTAGCAGAGGATGGCTTATGGGAAGAGAGGTCCTTGGTCCTATGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTAGCAGAGGATGGCTTATGGGAAGAGAGGTCCTTGGTCCTATGAA  850

seq1  GGCTCGATAGATGCCCAGTGTAGGGGAATCAAGAGTGAGGAGGTGGGAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCGATAGATGCCCAGTGTAGGGGAATCAAGAGTGAGGAGGTGGGAGT  900

seq1  -GGGTGGGTGAGGGGAGGAACACCCTCATAGAAGCAGGGGAAGGGAGGAT  949
       ||||||||                                         
seq2  GGGGTGGGT-----------------------------------------  909

seq1  AGAAAAGGGGGTTTCTGGGAAGGGGAAACCGGGAAAGGGGATAGATAACA  999
                                                        
seq2  --------------------------------------------------  909

seq1  TTTGAAATTTAATTAAAGAAAATATGCAATAAAAAAGAAAAATAGAACAA  1049
                                                        
seq2  --------------------------------------------------  909

seq1  CACACATAACATACAGAAAGAGAAACAGCTATTTTTTTTTTTATCTTAAC  1099
                                                        
seq2  --------------------------------------------------  909

seq1  AGGGATTCATTTAAAACAGTGGGT  1123
                              
seq2  ------------------------  909


seq1: chr18_51531455_51532632
seq2: B6Ng01-341J11.g_66_1227 (reverse)

seq1  AAAT-GCAAAGCCTTTCTTCTGTCCAATGAATAAGTGTTTATGAATGACT  49
      |||| |||||| |  |||||||||  ||||||||  | |||   | ||||
seq2  AAATGGCAAAGGC-CTCTTCTGTC--ATGAATAA--GGTTAGATAGGACT  45

seq1  GATCAATGTACTCAAAGTTATCAACTGTAGTCCCATCATCCGAGGTATTT  99
      |||||  |||||||||||   || ||||||| ||||||| ||||||| ||
seq2  GATCA--GTACTCAAAGTATCCACCTGTAGT-CCATCAT-CGAGGTA-TT  90

seq1  ACAGC-AAAGATTGCTCACCTATAGGACTATCTTAGTTAGAATTTCCATT  148
      ||||| |||||||||||||||||||||||||| ||||||||| |||||| 
seq2  ACAGCAAAAGATTGCTCACCTATAGGACTATC-TAGTTAGAA-TTCCAT-  137

seq1  GTTCTGAAGAGATACCACAACCAAGTCAACTCTTTTAAAGGACAACATAT  198
        |||||||||||| ||| ||||||||||||| |||||||||||||||||
seq2  -GTCTGAAGAGATA-CAC-ACCAAGTCAACTC-TTTAAAGGACAACATAT  183

seq1  AATTGGGGCTTGCTTACAGTTTTAGAGGTTCAGTCCATTTTTATCAAGGC  248
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AATTGGGGCTTGCTTACAGTTTTAGAGGTTCAGTCCA-TTTTATCAAGGC  232

seq1  AGAAAGCATGGCAGCATCCAGGCAGACATGGTGCTGGAGAAGGAGCTGAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCATGGCAGCATCCAGGCAGACATGGTGCTGGAGAAGGAGCTGAG  282

seq1  AGTTCAAGATCTTGATCCAACTGCAGCCAGAAAATGACTGAAATCCTCAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAGATCTTGATCCAACTGCAGCCAGAAAATGACTGAAATCCTCAG  332

seq1  GCAGCTAGGAGGAGGATCTCAAAGCCCACCCACAAAGTCACAACAAGGCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTAGGAGGAGGATCTCAAAGCCCACCCACAAAGTCACAACAAGGCC  382

seq1  ACACCTCAAGTAGTGCCACTCCCTGGTTCAAGCATATTCAAACCAGTACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCAAGTAGTGCCACTCCCTGGTTCAAGCATATTCAAACCAGTACA  432

seq1  AAAACCTTCTCCTGAGACTAGCTAAGCCCTTCTCTCTGTGTCATACACTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTTCTCCTGAGACTAGCTAAGCCCTTCTCTCTGTGTCATACACTA  482

seq1  TAGACCCCCGAGGCTCTGGTGTGTTTGAGTAGTTGGTAGTAGGGGCTTCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCCCCGAGGCTCTGGTGTGTTTGAGTAGTTGGTAGTAGGGGCTTCA  532

seq1  TTAGACAGCCCCTTGACCCCTGATTTTTCTGGATGTGTGTCTGTGAGTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACAGCCCCTTGACCCCTGATTTTTCTGGATGTGTGTCTGTGAGTCT  582

seq1  GTCCTTTTTCTCATTTGCTTGCTGCTTTAGTGAAGTTTCCAGGACAGAGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTTTCTCATTTGCTTGCTGCTTTAGTGAAGTTTCCAGGACAGAGC  632

seq1  TATGCTGGATGCAGCTTGTTACTTTATTTTCCAGTGATGGACGGATTATG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGGATGCAGCTTGTTACTTTATTTTCCAGTGATGGACGGATTATG  682

seq1  TGCTAGCTTTTTGTTATAATCATTATATTTCTTACTTTAGGTAGTGGCCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGCTTTTTGTTATAATCATTATATTTCTTACTTTAGGTAGTGGCCT  732

seq1  AGCTTTTTCCTTCTTTTTAGTTCTCAGATTTTCACCTTTTAAGATCTATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTTCCTTCTTTTTAGTTCTCAGATTTTCACCTTTTAAGATCTATT  782

seq1  TTCTTATGCATTGTGTATTTGTGATACTTTGTTCTTCTATATTAATTTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATGCATTGTGTATTTGTGATACTTTGTTCTTCTATATTAATTTTT  832

seq1  AGTTGAAATTACAGTTTATTCTCAGTTCCTATCATGCCGTTTCAAATGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAAATTACAGTTTATTCTCAGTTCCTATCATGCCGTTTCAAATGCT  882

seq1  TCTGTTTCTGATCTGTGTGGGTTTATTCATCACTCTGTCATTTTGTGAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCTGATCTGTGTGGGTTTATTCATCACTCTGTCATTTTGTGAGA  932

seq1  TATTTTTTTGCTTTGAATAGATGAGAGTTGAGTTTTCATCTCTAGCATAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTGCTTTGAATAGATGAGAGTTGAGTTTTCATCTCTAGCATAT  982

seq1  CCTTCTCTACTGGGCTTTTACTCCCAGATATAATTTTATGTCCTATTATT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCTACTGGGCTTTTACTCCCAGATATAATTTTATGTCCTATTATT  1032

seq1  CTTTTTATTCATAATGACTTTCTATTTGAGTTCTCTCTTTTGGTGGGAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTATTCATAATGACTTTCTATTTGAGTTCTCTCTTTTGGTGGGAAA  1082

seq1  TTAGTTTCACTGAACTTTTAGAAGAAAGGGGGAGTTCAGAGATAACATTA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTCACTGAACTTTTAGAAGAAAGGGGGAGTTCAGAGATAACATTA  1132

seq1  AGCCCATGTGGCTCTTACTTGGTGGAATTC  1178
      ||||||||||||||||||||||||||||||
seq2  AGCCCATGTGGCTCTTACTTGGTGGAATTC  1162


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