BAC Information

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BAC

Clone NameB6Ng01-341M15
Chromosome18 (Build37)6 (Build37)
Map Location 88,736,896 - 88,738,071129,456,359 - 129,456,488
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC329008, LOC100039961, LOC100039972, LOC623177
Downstream geneLOC665497, LOC100040003, LOC623208, Socs6, Rttn, Cd226, Dok6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341M15.bB6Ng01-341M15.g
ACCGA125070GA125071
length1,176118
definitionB6Ng01-341M15.b B6Ng01-341M15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(88,736,896 - 88,738,071)(129,456,359 - 129,456,488)
sequence
gaattccagtggagtggtgaagaagggagcactgagaagacatctggtcg
accacattgtactaaatattagctttgaagcttcttttcacaatctgcag
caacagttacttttttcctagtaatacagctaaattaaatttgttcaaaa
gcagaaaatttaaattgcaatgcttgcaatgcaatgatcttgaatgacaa
acagaatttattttccatagtaagattaattgaaagtctatgtgaaaatt
tccagaaaaaatgtaagcaagatggagagaaaaaacaaacaaacaaacaa
acaaacaaacaaacaaacaccaagattgtggcatggttacctttaagtgg
gatatgtgtatcaaattcctttctcacaagtttcaggtatctttgtggaa
gaatggacagaaacactgtaagaactgaaggcatttccccactgaactgg
aaatttaaaaaagaagggcagttttccccttggatttctcttcttcttat
ggtgatttttactgtgctacagagaaaaattaacttaagcaaaatgtgtc
tctacctttagagtttcagagataaatatattttattccaatttggcata
tttaaataataacttaaaaatattcacattagtttggttcttctgtatca
atactgatttagctaacagttcttagaccctcagtcttctggtaaggacg
tagacaaaagtggtcaataggaataccatagtcctttcactttgtgtact
ctacagtctcaggagcactaagattctgcttttcacagacagtcaagaaa
agtgggaaatcttcaaaaagccattagccatgcctcaatctgctgtcctg
gttgtaacaactttctagtagcatctgagtaacaactgaggcatagtccc
tatacccaagtttgtctgagtttgagaagatgttttttctcagttaaatt
tctttacaggagcaccattaatatgattcttctggactgaccacctactt
ctgtgaggattccttacatggaacaggaactagacaccacctccaaacta
ttcttttttgttctatcagccatgcagaggcttctttattttgccaaata
ttgagtgttaaagaaaaaacagatatttggttaaaccattaagctttgct
ctgagaccttagaaataggctgttta
agtggtcaggaaagaagaatgggtgggttggggagcagggtagggggggt
gtatagggacttttggaatagcatttaaaatgtaaatgaagaaaatatct
ataaaaaacagaaatgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_88736896_88738071
seq2: B6Ng01-341M15.b_47_1222 (reverse)

seq1  TAAACAGCCTA-TTCT-AGGTCTCCAGAGCAAAGCTTTATGGTTT-ACCA  47
      ||||||||||| |||| |||||| ||||||||||||| ||||||| ||||
seq2  TAAACAGCCTATTTCTAAGGTCT-CAGAGCAAAGCTTAATGGTTTAACCA  49

seq1  AATATCTGTTTTTCTTTTAACACTC-ATATTT-GCAAAATAAAGGAAGCC  95
      |||||||||||||  |||||||||| |||||| |||||||||| ||||||
seq2  AATATCTGTTTTTTCTTTAACACTCAATATTTGGCAAAATAAA-GAAGCC  98

seq1  TCTGCATTGGCTGGATAGA--CAAAAAGAATAGTTTTGGAGTGGTGTCTA  143
      |||||| ||||| ||||||   |||||||||||||| |  ||||||||||
seq2  TCTGCA-TGGCT-GATAGAACAAAAAAGAATAGTTTGGAGGTGGTGTCTA  146

seq1  GTTCCTGTTCCATGTAAGGAATCCTCACAAGAAGTAGGT-GTCAGTTCCA  192
      |||||||||||||||||||||||||||| |||||||||| ||||| ||||
seq2  GTTCCTGTTCCATGTAAGGAATCCTCAC-AGAAGTAGGTGGTCAG-TCCA  194

seq1  GAAGAATCATATTAATGGTGCTTCCTGTAAAGAAAATTTAACTGAGAAAA  242
      ||||||||||||||||||||| |||||||||| |||||||||||||||||
seq2  GAAGAATCATATTAATGGTGC-TCCTGTAAAG-AAATTTAACTGAGAAAA  242

seq1  AACATCTTCTCAAACTCAGACAAACTTGGGTATAGGGACTATGCCTCAGT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTTCTCAAACTCAGACAAACTTGGGTATAGGGACTATGCCTCAGT  292

seq1  TGTTACTCAGATGCTACTAGAAAGTTGTTACAACCAGGACAGCAGATTGA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTCAGATGCTACTAGAAAGTTGTTACAACCAGGACAGCAGATTGA  342

seq1  GGCATGGCTAATGGCTTTTTGAAGATTTCCCACTTTTCTTGACTGTCTGT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGGCTAATGGCTTTTTGAAGATTTCCCACTTTTCTTGACTGTCTGT  392

seq1  GAAAAGCAGAATCTTAGTGCTCCTGAGACTGTAGAGTACACAAAGTGAAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCAGAATCTTAGTGCTCCTGAGACTGTAGAGTACACAAAGTGAAA  442

seq1  GGACTATGGTATTCCTATTGACCACTTTTGTCTACGTCCTTACCAGAAGA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTATGGTATTCCTATTGACCACTTTTGTCTACGTCCTTACCAGAAGA  492

seq1  CTGAGGGTCTAAGAACTGTTAGCTAAATCAGTATTGATACAGAAGAACCA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGTCTAAGAACTGTTAGCTAAATCAGTATTGATACAGAAGAACCA  542

seq1  AACTAATGTGAATATTTTTAAGTTATTATTTAAATATGCCAAATTGGAAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATGTGAATATTTTTAAGTTATTATTTAAATATGCCAAATTGGAAT  592

seq1  AAAATATATTTATCTCTGAAACTCTAAAGGTAGAGACACATTTTGCTTAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATATTTATCTCTGAAACTCTAAAGGTAGAGACACATTTTGCTTAA  642

seq1  GTTAATTTTTCTCTGTAGCACAGTAAAAATCACCATAAGAAGAAGAGAAA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTTTTCTCTGTAGCACAGTAAAAATCACCATAAGAAGAAGAGAAA  692

seq1  TCCAAGGGGAAAACTGCCCTTCTTTTTTAAATTTCCAGTTCAGTGGGGAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGGGAAAACTGCCCTTCTTTTTTAAATTTCCAGTTCAGTGGGGAA  742

seq1  ATGCCTTCAGTTCTTACAGTGTTTCTGTCCATTCTTCCACAAAGATACCT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTCAGTTCTTACAGTGTTTCTGTCCATTCTTCCACAAAGATACCT  792

seq1  GAAACTTGTGAGAAAGGAATTTGATACACATATCCCACTTAAAGGTAACC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTGTGAGAAAGGAATTTGATACACATATCCCACTTAAAGGTAACC  842

seq1  ATGCCACAATCTTGGTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACAATCTTGGTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGT  892

seq1  TTTTTCTCTCCATCTTGCTTACATTTTTTCTGGAAATTTTCACATAGACT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCTCCATCTTGCTTACATTTTTTCTGGAAATTTTCACATAGACT  942

seq1  TTCAATTAATCTTACTATGGAAAATAAATTCTGTTTGTCATTCAAGATCA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTAATCTTACTATGGAAAATAAATTCTGTTTGTCATTCAAGATCA  992

seq1  TTGCATTGCAAGCATTGCAATTTAAATTTTCTGCTTTTGAACAAATTTAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTGCAAGCATTGCAATTTAAATTTTCTGCTTTTGAACAAATTTAA  1042

seq1  TTTAGCTGTATTACTAGGAAAAAAGTAACTGTTGCTGCAGATTGTGAAAA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTGTATTACTAGGAAAAAAGTAACTGTTGCTGCAGATTGTGAAAA  1092

seq1  GAAGCTTCAAAGCTAATATTTAGTACAATGTGGTCGACCAGATGTCTTCT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTCAAAGCTAATATTTAGTACAATGTGGTCGACCAGATGTCTTCT  1142

seq1  CAGTGCTCCCTTCTTCACCACTCCACTGGAATTC  1176
      ||||||||||||||||||||||||||||||||||
seq2  CAGTGCTCCCTTCTTCACCACTCCACTGGAATTC  1176

seq1: chr6_129456359_129456488
seq2: B6Ng01-341M15.g_90_188 (reverse)

seq1  TACATTTCTTTTTTTTGGATTTTTTATTAGATATTTTCTTCATTTACATT  50
      ||||||||| ||||||           |||||||||||||||||||||||
seq2  TACATTTCTGTTTTTT----------ATAGATATTTTCTTCATTTACATT  40

seq1  TCAAATGGTATTCCCTTTCCTAGTTTTCTCTCTGAAAGTCCCCTATACCC  100
      | ||||| ||||||                    ||||| |||||||| |
seq2  TTAAATGCTATTCC-------------------AAAAGT-CCCTATACAC  70

seq1  TCCCCCCAACCCTGCTCCCCAACCCACCCA  130
       |||||| ||||||||||||||||||||||
seq2  -CCCCCCTACCCTGCTCCCCAACCCACCCA  99