BAC Information

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BAC

Clone NameB6Ng01-342F22
Chromosome18 (Build37)
Map Location 50,523,952 - 50,606,661
singlet/doubletdoublet
Overlap genenone
Upstream geneDtwd2, Dmxl1, Tnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93
Downstream geneHdhd1a, LOC100042373, LOC100042385, Prr16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342F22.bB6Ng01-342F22.g
ACCGA125476GA125477
length1,1311,138
definitionB6Ng01-342F22.b B6Ng01-342F22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,605,521 - 50,606,661)(50,523,952 - 50,525,123)
sequence
gaattccatagccagtttaatatactcaattagtttaagcaatataaaat
tggggatgagtgaaattttcttataaaatgctcgtttgtctcaaaaaaaa
acccataaaatttacttttaaatagacagacagttatctcaacattgtgt
aaataatagcccatatttgaaagaaagcagttgggctggaactcctaccg
tgggcctatcatccagcactgtagaagttaaggcaaaaagatggtatcac
attcaaggtcagtctggactacatgaagagaatcatcttcaaacaatgca
aaaatcattataataaaaaaaatcccacctaaactttactatgaacttta
tatagcattgataaacctctgggcttctttgagaactgcagttttgtcaa
gtgggcacagtcactcctaacacacaaaaatactttatggttaaattatg
ataacttctaccagtaactatgaaaatattgaacatcagaaagaactagt
aagatccaaaattatttgtatgaaaaggaaaagttaactcctttctagac
taggtctaaacaagtaatttttccttcatctaacagaagccgggtgcagg
atctgttctttgtcaacatcaggattggaagcatcccagggacttttgtt
ctcttcaaagtcacaagtcaggagccctgacttttctcaccaagtctgag
ttccaaggataaagaagagtgattcaccctgatccctttgatcaagataa
tagacttcttacaggcccctggtgactcatatttaggcatctcaggccag
aacagtgtcctgtgacttgtctcagctgctctggaggttgcaaagggaga
gctgaattctcaactctccgctttaggtaaaacatggaaagcagatgctt
aagggttagaattgaataaatctggagtctaccacacaggcaaagttata
gaagtcgaagccagatgaacaacatgagcttcagagagtctggtcagatt
tctctttgccctggtgcccttgatgattcttcttagtatcactgtctcct
ttatttaggatagtcattattcatcttccaaagatgctgcaaagactaaa
tacacatgtattgagttatttcccaggtgac

gaattctctgcaattcagccctgcttcttctttttgtcacaactgtctct
gtccttgactttgacaagcttcatccacatgcaaattgtttgcacctcac
tttagcccaccctggacccatccaaacttcctgtcacaggtattcacttc
tgaattcgtttcacttggcctcccactggaatctcacaggccaaagggca
agccagagactcactctggtgttcgtaaatattttgagttattattatca
tcttttaaaaatgattcatatttgtaatttataaaagtatatagcatcta
tagcctcacatacgtaacacatccaatataggggtgtgaataaataaatg
tctggctaggtagacgggaacatgagatgagagctgcttggaaagaagaa
aagttcaggagcacaagactggcaagaatcagtggcaaagttaaactcta
gacacactggctctgactgtctccatggggacagtgctgaagcagtgtga
aggtcatcactcctctcaccagccttacacaaaagagacccagcactcca
ctcattaagagtctcctccctcacacaatcatctgtaaagactgaataaa
ggctgaatttaaagcaacaggtaaagttaatccttagatttagaaggtga
aaggttaaaaatgaaaggctgaggtttactctattttaaaaattctgatc
gtagggtaataggtttacaattctcaggtagcattgtcatttaatgtacg
gtctgaaactattagaaattctgtggcgtatgtacagccatggggtgtgg
ggagctgagagaagaccactcagtttgatgttcacacagcagactccttt
actcagctctccagatgttctcatcctcagtgtgccatgccatgaaagtt
tgacatcagtgggtctaagtcctgattaaattacttatttttttaaagaa
cccgctcagatgtttacgcttggatttctctggatagcttattgaaatgc
tttcagtgcaataaaacgaatacgagctttctcatcacctactcttgtgt
actcaatgtttgtagaatatgaatatactcccattcgatcctggcgatga
tacatgtcttctgcagctcatacagtttcattgcaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_50605521_50606661
seq2: B6Ng01-342F22.b_48_1178 (reverse)

seq1  GTCACCTGGAAAATAACTCATTAACAATGTGTATTATAGTCTTTGCAGCA  50
      ||||||||| |||||||||| ||   ||||||||| ||||||||||||||
seq2  GTCACCTGGGAAATAACTCAATA--CATGTGTATT-TAGTCTTTGCAGCA  47

seq1  TCTTTGGAAGATG-ATTATGACTAATCCCTTAATAAAGGAAGAACAGTGA  99
      ||||||||||||| || |||||||   ||| |||||||||   |||||||
seq2  TCTTTGGAAGATGAATAATGACTA--TCCTAAATAAAGGA--GACAGTGA  93

seq1  TACTAAGAAG-ATCATTCAAGGGCACCAGGGCAAAAAGAGAAATCTGACC  148
      |||||||||| |||| ||||||||||||||||  ||||||||||||||||
seq2  TACTAAGAAGAATCA-TCAAGGGCACCAGGGC--AAAGAGAAATCTGACC  140

seq1  AAGACTCTCTGAAGCTCATG-TGTTCATCTTGCCTTCGACTTCTATAACT  197
       ||||||||||||||||||| |||||||| || |||||||||||||||||
seq2  -AGACTCTCTGAAGCTCATGTTGTTCATC-TGGCTTCGACTTCTATAACT  188

seq1  TTGCCTGTGTGGTAGACTCCAGATTTTATTCAATTCTAACCCTTAAGCAT  247
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTGCCTGTGTGGTAGACTCCAGA-TTTATTCAATTCTAACCCTTAAGCAT  237

seq1  CTGC-TTCCATGTTTTACCTAAAGCGGAGAGTTTGAGAATTCAGCTCTCC  296
      |||| |||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTGCTTTCCATGTTTTACCTAAAGCGGAGAG-TTGAGAATTCAGCTCTCC  286

seq1  CTTTGCAACCTCCAGAGCAGCTGAGACAAGTCACAGGACACTGTTCTGGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCAACCTCCAGAGCAGCTGAGACAAGTCACAGGACACTGTTCTGGC  336

seq1  CTGAGATGCCTAAATATGAGTCACCAGGGGCCTGTAAGAAGTCTATTATC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATGCCTAAATATGAGTCACCAGGGGCCTGTAAGAAGTCTATTATC  386

seq1  TTGATCAAAGGGATCAGGGTGAATCACTCTTCTTTATCCTTGGAACTCAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCAAAGGGATCAGGGTGAATCACTCTTCTTTATCCTTGGAACTCAG  436

seq1  ACTTGGTGAGAAAAGTCAGGGCTCCTGACTTGTGACTTTGAAGAGAACAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTGAGAAAAGTCAGGGCTCCTGACTTGTGACTTTGAAGAGAACAA  486

seq1  AAGTCCCTGGGATGCTTCCAATCCTGATGTTGACAAAGAACAGATCCTGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCTGGGATGCTTCCAATCCTGATGTTGACAAAGAACAGATCCTGC  536

seq1  ACCCGGCTTCTGTTAGATGAAGGAAAAATTACTTGTTTAGACCTAGTCTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGGCTTCTGTTAGATGAAGGAAAAATTACTTGTTTAGACCTAGTCTA  586

seq1  GAAAGGAGTTAACTTTTCCTTTTCATACAAATAATTTTGGATCTTACTAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAGTTAACTTTTCCTTTTCATACAAATAATTTTGGATCTTACTAG  636

seq1  TTCTTTCTGATGTTCAATATTTTCATAGTTACTGGTAGAAGTTATCATAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTGATGTTCAATATTTTCATAGTTACTGGTAGAAGTTATCATAA  686

seq1  TTTAACCATAAAGTATTTTTGTGTGTTAGGAGTGACTGTGCCCACTTGAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACCATAAAGTATTTTTGTGTGTTAGGAGTGACTGTGCCCACTTGAC  736

seq1  AAAACTGCAGTTCTCAAAGAAGCCCAGAGGTTTATCAATGCTATATAAAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGCAGTTCTCAAAGAAGCCCAGAGGTTTATCAATGCTATATAAAG  786

seq1  TTCATAGTAAAGTTTAGGTGGGATTTTTTTTATTATAATGATTTTTGCAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGTAAAGTTTAGGTGGGATTTTTTTTATTATAATGATTTTTGCAT  836

seq1  TGTTTGAAGATGATTCTCTTCATGTAGTCCAGACTGACCTTGAATGTGAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAAGATGATTCTCTTCATGTAGTCCAGACTGACCTTGAATGTGAT  886

seq1  ACCATCTTTTTGCCTTAACTTCTACAGTGCTGGATGATAGGCCCACGGTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTTTTTGCCTTAACTTCTACAGTGCTGGATGATAGGCCCACGGTA  936

seq1  GGAGTTCCAGCCCAACTGCTTTCTTTCAAATATGGGCTATTATTTACACA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTCCAGCCCAACTGCTTTCTTTCAAATATGGGCTATTATTTACACA  986

seq1  ATGTTGAGATAACTGTCTGTCTATTTAAAAGTAAATTTTATGGGTTTTTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGAGATAACTGTCTGTCTATTTAAAAGTAAATTTTATGGGTTTTTT  1036

seq1  TTTGAGACAAACGAGCATTTTATAAGAAAATTTCACTCATCCCCAATTTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGACAAACGAGCATTTTATAAGAAAATTTCACTCATCCCCAATTTT  1086

seq1  ATATTGCTTAAACTAATTGAGTATATTAAACTGGCTATGGAATTC  1141
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGCTTAAACTAATTGAGTATATTAAACTGGCTATGGAATTC  1131


seq1: chr18_50523952_50525123
seq2: B6Ng01-342F22.g_69_1206

seq1  GAATTCTCTGCAATTCAGCCCTGCTTCTTCTTTTTGTCACAACTGTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCAATTCAGCCCTGCTTCTTCTTTTTGTCACAACTGTCTCT  50

seq1  GTCCTTGACTTTGACAAGCTTCATCCACATGCAAATTGTTTGCACCTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGACTTTGACAAGCTTCATCCACATGCAAATTGTTTGCACCTCAC  100

seq1  TTTAGCCCACCCTGGACCCATCCAAACTTCCTGTCACAGGTATTCACTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCCACCCTGGACCCATCCAAACTTCCTGTCACAGGTATTCACTTC  150

seq1  TGAATTCGTTTCACTTGGCCTCCCACTGGAATCTCACAGGCCAAAGGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCGTTTCACTTGGCCTCCCACTGGAATCTCACAGGCCAAAGGGCA  200

seq1  AGCCAGAGACTCACTCTGGTGTTCGTAAATATTTTGAGTTATTATTATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAGACTCACTCTGGTGTTCGTAAATATTTTGAGTTATTATTATCA  250

seq1  TCTTTTAAAAATGATTCATATTTGTAATTTATAAAAGTATATAGCATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAAAAATGATTCATATTTGTAATTTATAAAAGTATATAGCATCTA  300

seq1  TAGCCTCACATACGTAACACATCCAATATAGGGGTGTGAATAAATAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTCACATACGTAACACATCCAATATAGGGGTGTGAATAAATAAATG  350

seq1  TCTGGCTAGGTAGACGGGAACATGAGATGAGAGCTGCTTGGAAAGAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTAGGTAGACGGGAACATGAGATGAGAGCTGCTTGGAAAGAAGAA  400

seq1  AAGTTCAGGAGCACAAGACTGGCAAGAATCAGTGGCAAAGTTAAACTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAGGAGCACAAGACTGGCAAGAATCAGTGGCAAAGTTAAACTCTA  450

seq1  GACACACTGGCTCTGACTGTCTCCATGGGGACAGTGCTGAAGCAGTGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACTGGCTCTGACTGTCTCCATGGGGACAGTGCTGAAGCAGTGTGA  500

seq1  AGGTCATCACTCCTCTCACCAGCCTTACACAAAAGAGACCCAGCACTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATCACTCCTCTCACCAGCCTTACACAAAAGAGACCCAGCACTCCA  550

seq1  CTCATTAAGAGTCTCCTCCCTCACACAATCATCTGTAAAGACTGAATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTAAGAGTCTCCTCCCTCACACAATCATCTGTAAAGACTGAATAAA  600

seq1  GGCTGAATTTAAAGCAACAGGTAAAGTTAATCCTTAGATTTAGAAGGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAATTTAAAGCAACAGGTAAAGTTAATCCTTAGATTTAGAAGGTGA  650

seq1  AAGGTTAAAAATGAAAGGCTGAGGTTTACTCTATTTTAAAAATTCTGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTAAAAATGAAAGGCTGAGGTTTACTCTATTTTAAAAATTCTGATC  700

seq1  GTAGGGTAATAGGTTTACAATTCTCAGGTAGCATTGTCATTTAATGTACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGTAATAGGTTTACAATTCTCAGGTAGCATTGTCATTTAATGTACG  750

seq1  GTCTGAAACTATTAGAAATTCTGTGGCGTATGTACAGCCATGGGGTGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAACTATTAGAAATTCTGTGGCGTATGTACAGCCATGGGGTGTGG  800

seq1  GGAGCTGAGAGAAGACCACTCAGTTTGATGTTCACACAGCAGACTCCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGAGAGAAGACCACTCAGTTTGATGTTCACACAGCAGACTCCTTT  850

seq1  ACTCAGCTCTCCAGATGTTCTCATCCTCAGTGTGCCATGCCATGAAAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCTCTCCAGATGTTCTCATCCTCAGTGTGCCATGCCATGAAAGTT  900

seq1  TGACAATCAGTGGGTCTAAGTCCTGATTAAAATTACTTATTTTTTTAAAG  950
      |||| ||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGAC-ATCAGTGGGTCTAAGTCCTGATT-AAATTACTTATTTTTTTAAAG  948

seq1  AACCCGCTCAGGATGTTTACGCTTGGATTTCTCTGGATAGCTTATTGAAA  1000
      |||||||||| |||||||||||||||||||||||||||||||||||| ||
seq2  AACCCGCTCA-GATGTTTACGCTTGGATTTCTCTGGATAGCTTATTG-AA  996

seq1  ATGCTTTCAAGTGCCAAATAAAAACCGAAATACGGAGCCTTTTCTCATCA  1050
      |||||||| |||||  |||||||  || ||||| ||||  ||||||||||
seq2  ATGCTTTC-AGTGC--AATAAAA--CG-AATAC-GAGC--TTTCTCATCA  1037

seq1  ACTACTCTTTGTGTACTCATTGTTTTGTAGAATATGAATATACTCCCCAT  1100
       |||||| ||||||||||| || ||||||||||||||||||||||||  |
seq2  CCTACTC-TTGTGTACTCAATG-TTTGTAGAATATGAATATACTCCCATT  1085

seq1  CAGAATCTTGGGGCAGATAGTATATACATGTCCCCTCTGCCAGCCTTTCC  1150
      |   ||| ||| |  |       ||||||||  | |||| ||||   | |
seq2  C--GATCCTGGCGATG-------ATACATGT--CTTCTG-CAGCTCATAC  1123

seq1  ATTACCATGTTTCATTGCAGGC  1172
      |       ||||||||||||||
seq2  A-------GTTTCATTGCAGGC  1138


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