BAC Information

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BAC

Clone NameB6Ng01-342O16
Chromosome18 (Build37)
Map Location 48,308,245 - 48,309,360
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667120, Sema6a, LOC628477, 9130209A04Rik, A730092B10, LOC383325, LOC100042982, LOC100042284, LOC100042301, EG433182, LOC383326
Downstream geneLOC100042323, LOC545470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342O16.bB6Ng01-342O16.g
ACCGA125847GA125848
length1,1041,179
definitionB6Ng01-342O16.b B6Ng01-342O16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaagattttgaaatcacaagccaacacaatgtgttttgccttggt
tatttcctcaagtatacagtgcagtaaaatgcttgccaatctctgggatt
tgaaacatgaataaaacaaaacaaaacaaaactcagaccaatttgtttca
ttcttctggatttggtcgtaatcttcatgataaaagattgacacgtggtc
cttgggaatcacaccctcaattctattggctcctttaaacaagttcatgg
caccagaagatcttgtttgagtttctgaactattttttggctagaaccta
caaatggctcttcctcatcttactgttgatgtcttctagacttgaactaa
gctgaaggcctatcacagtggtttctcaacctgggggggtcacaacccct
ttgggagttgaatgacccttttcacggaggttgcctaagactattggaaa
acaaagatatttacattacaattcataacagtagtaaaattacagttatg
gaataacaatgaaataactttaggctggaggtcaccacaacataagaaac
tattaaagggttgcagcattagaaagatagaaaaccacttcctatcagga
aagttaaaaacaaaatgtaatttttggacagcttattcaaggtttaagga
ctttgttgagggttctaacacatagttagatctaggcagcctctgaatca
gtaacttgcaaccataggattgtgttagtactctatccactagtgttccc
tccaagagattcaagatcagtttggagaaatatgcctgctccttttagat
tcagaggaaatgggaaatctacaatctctgtctgagatttaatttctata
aatctttcacacaaggttctgctcttgaggtgccaggcctagtgacccca
gccttgggcctatgcaacagagagtctgtctcccttctaagcctttgtat
gctcctaaatggtctgatggaatgaacaggttactttcccttgattttga
tccagaaacttaacaaagtccactgctgggcggacagtatgcccaggtat
ttcagtactgtgaaaacatatgagatattcttttaccttctggaatgttc
tggg
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgcccggggcctagcaaa
cacagaagtggatgctcacagtcagctaatggatggatcacagggcttcc
aatggaggagctagagaagtacccaaggagctaagggatctttcaaccct
ataggtggaacacattatgactaccagttaccctgagctctgacttctag
cttcatatgtatcaaagatgcctagtcggcatcactgaaagaaagtcaat
tggacacgcagaccttttgtgccgttacaggaacgcaggtctagagtgag
aatgttggcttggatatagtggaaaactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_48308245_48309360
seq2: B6Ng01-342O16.b_45_1148 (reverse)

seq1  CCCAGGAACATCCCAGA--GTAAAAGAATATCTCATAATTGTTTTCAACA  48
      |||| |||||| |||||  ||||||||||||||||||  ||||||| |||
seq2  CCCA-GAACATTCCAGAAGGTAAAAGAATATCTCATA--TGTTTTC-ACA  46

seq1  GTACTGAAATACCTGGGGCATACTGTTCCGCCCAGCAGGTGGACCTTTGT  98
      |||||||||||||| |||||||||| ||||||||||| ||||| ||||||
seq2  GTACTGAAATACCT-GGGCATACTG-TCCGCCCAGCA-GTGGA-CTTTGT  92

seq1  TAAGTTTCTGGGATCAAAATCCAGGGGAAAGTAACCTTGTTCATTTCCAT  148
      ||||||||| |||||||||| || |||||||||||| |||||| ||||| 
seq2  TAAGTTTCT-GGATCAAAAT-CAAGGGAAAGTAACC-TGTTCA-TTCCA-  137

seq1  TCAGACCATTTAGGAGCATTAACAAAGGCTTAGAAGGGAGACAGACTCTC  198
      |||||||||||||||||||  |||||||||||||||||||||||||||||
seq2  TCAGACCATTTAGGAGCAT--ACAAAGGCTTAGAAGGGAGACAGACTCTC  185

seq1  TGTTGCATAGG-CCAAGGCTGGGGTCACTAGGCCTGGCACCTCAAGAGCA  247
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCATAGGCCCAAGGCTGGGGTCACTAGGCCTGGCACCTCAAGAGCA  235

seq1  GAACCTTGTGTGAAAGATTTATAGAAATTAAATCTCAGACAGAGATTGTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTGTGTGAAAGATTTATAGAAATTAAATCTCAGACAGAGATTGTA  285

seq1  GATTTCCCATTTCCTCTGAATCTAAAAGGAGCAGGCATATTTCTCCAAAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCCATTTCCTCTGAATCTAAAAGGAGCAGGCATATTTCTCCAAAC  335

seq1  TGATCTTGAATCTCTTGGAGGGAACACTAGTGGATAGAGTACTAACACAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTGAATCTCTTGGAGGGAACACTAGTGGATAGAGTACTAACACAA  385

seq1  TCCTATGGTTGCAAGTTACTGATTCAGAGGCTGCCTAGATCTAACTATGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGGTTGCAAGTTACTGATTCAGAGGCTGCCTAGATCTAACTATGT  435

seq1  GTTAGAACCCTCAACAAAGTCCTTAAACCTTGAATAAGCTGTCCAAAAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAACCCTCAACAAAGTCCTTAAACCTTGAATAAGCTGTCCAAAAAT  485

seq1  TACATTTTGTTTTTAACTTTCCTGATAGGAAGTGGTTTTCTATCTTTCTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTGTTTTTAACTTTCCTGATAGGAAGTGGTTTTCTATCTTTCTA  535

seq1  ATGCTGCAACCCTTTAATAGTTTCTTATGTTGTGGTGACCTCCAGCCTAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCAACCCTTTAATAGTTTCTTATGTTGTGGTGACCTCCAGCCTAA  585

seq1  AGTTATTTCATTGTTATTCCATAACTGTAATTTTACTACTGTTATGAATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTTCATTGTTATTCCATAACTGTAATTTTACTACTGTTATGAATT  635

seq1  GTAATGTAAATATCTTTGTTTTCCAATAGTCTTAGGCAACCTCCGTGAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGTAAATATCTTTGTTTTCCAATAGTCTTAGGCAACCTCCGTGAAA  685

seq1  AGGGTCATTCAACTCCCAAAGGGGTTGTGACCCCCCCAGGTTGAGAAACC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCATTCAACTCCCAAAGGGGTTGTGACCCCCCCAGGTTGAGAAACC  735

seq1  ACTGTGATAGGCCTTCAGCTTAGTTCAAGTCTAGAAGACATCAACAGTAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGATAGGCCTTCAGCTTAGTTCAAGTCTAGAAGACATCAACAGTAA  785

seq1  GATGAGGAAGAGCCATTTGTAGGTTCTAGCCAAAAAATAGTTCAGAAACT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGAAGAGCCATTTGTAGGTTCTAGCCAAAAAATAGTTCAGAAACT  835

seq1  CAAACAAGATCTTCTGGTGCCATGAACTTGTTTAAAGGAGCCAATAGAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAGATCTTCTGGTGCCATGAACTTGTTTAAAGGAGCCAATAGAAT  885

seq1  TGAGGGTGTGATTCCCAAGGACCACGTGTCAATCTTTTATCATGAAGATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTGTGATTCCCAAGGACCACGTGTCAATCTTTTATCATGAAGATT  935

seq1  ACGACCAAATCCAGAAGAATGAAACAAATTGGTCTGAGTTTTGTTTTGTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACCAAATCCAGAAGAATGAAACAAATTGGTCTGAGTTTTGTTTTGTT  985

seq1  TTGTTTTATTCATGTTTCAAATCCCAGAGATTGGCAAGCATTTTACTGCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTATTCATGTTTCAAATCCCAGAGATTGGCAAGCATTTTACTGCA  1035

seq1  CTGTATACTTGAGGAAATAACCAAGGCAAAACACATTGTGTTGGCTTGTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATACTTGAGGAAATAACCAAGGCAAAACACATTGTGTTGGCTTGTG  1085

seq1  ATTTCAAAATCTTGAATTC  1116
      |||||||||||||||||||
seq2  ATTTCAAAATCTTGAATTC  1104