BAC Information

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BAC

Clone NameB6Ng01-343J22
Chromosome18 (Build37)
Map Location 62,711,281 - 62,814,226
singlet/doubletdoublet
Overlap geneSpink10, EG408198
Upstream geneCsnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2, Adrb2, Htr4, Fbxo38
Downstream gene2700046A07Rik, Apcdd1, Napg, 9430028L06Rik, 9030411M15Rik, LOC627792
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343J22.bB6Ng01-343J22.g
ACCGA126351GA126352
length1,027776
definitionB6Ng01-343J22.b B6Ng01-343J22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,813,204 - 62,814,226)(62,711,281 - 62,712,057)
sequence
gaattcactgcagaaagatatcctgatgatagccattggaatgtttggct
ccagaaaatgtcagcatttgccatagtgagaaaactgaataggaacatca
cttttcctgtagaatccaaagggaaaaacccattcaaaattaatcacacg
tttggataatttatatgcttatatacttataagagaggatttttactctg
gacatgctagagagattatgctttattcttaaagcagctgtgtccacttg
cttcttgggtccctgtataccctttctacactgtggggatccttggcaat
tccaactttctcagtcaaaactcacatcagatccatgaaagaagagctat
gggtaattgcagctctgctaagaggtacataccacttcggaagcaaacgg
gcagccatttataagagtagaaagccacataaggaaatgaggaataaagg
aggccatcgagccttcaaaccacaaagtctttcagactgaaggagagcga
gacagagacagagagacacagagacaagtgttcagttgagagtgcctgtg
ctctcggggggcgtgggggggtgtttagaaagacgacttccagagacaac
ccgacattacacgagtttcttttttagcattaactagctcattatccaca
gtgaattttaaaagctcagcgttcaatcctattcctggtcagttatgtag
ctagaatgctgcgagatggactctcatggcatcttggagatacgccgctt
aacattacagtttcagaatcacacccttgtgtctacggctcccacagaag
tgcctcacaactcaccaagttacgttaatagtcagttttccagaacactc
aactcggatatgttgaccagttcacagtctcaagagcttgaagtacatcc
cttcggctctaataactatcatggttgtctttgccacagtccatgagtct
agatttaccaacgatatgattttttatactactgggtaaatatgccttat
ttcatgacttagaaaaaaaataatatt
gaattcttgtttacagaaggaattacaagtaaaccatgtggctgctttcc
tctgcagcttttgaattgttgtactacattaccctcctatcaaaacagat
gccaccctgctaagaccagctgtttctgcttgcaaacagtcatcacgtgc
agccttgattactgctgatatttctttacttaataggtgtgggagaggac
actgagccctcacctgggtagcccgacactccttccagccatccttgccc
cttgctcccaagggtctcagggacgtgctagagtatataggctgggaaaa
aaaggggtttatctctgcatccatggaggagtgatcatctgtgttgggtg
ctgacattcattgctctagggccactcgtgcttccacccacatcccctca
cccatggtttgtaagtaagcctaagtaactccttgggtcctcggagttaa
ctgtggtgcactcagactttggcttgccatttcttgggcggggaggcagg
ataagagaaagtatgagatagctgccaaacagcccttgctcatctgaaac
tttgaacacatggagagactaggctgtaaagaaggaacagtcgagaggta
catgtaatagaaaatagcaatcaggtactgaagaggaaggaaggagggaa
gggagggagtgaggtagaaaaagaagagaagagaagggaaataaagaaag
atctccatttgtatgtctccaacacacacacatacacacacacacacaaa
taagtaatttcgtaaagccaaagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_62813204_62814226
seq2: B6Ng01-343J22.b_46_1072 (reverse)

seq1  AATATT-TATTTTTTCT-AGTCATG-AATAAGGCATTATTACCCAGTGGT  47
      |||||| | |||||||| ||||||| ||||||||||  ||||||||| ||
seq2  AATATTATTTTTTTTCTAAGTCATGAAATAAGGCATATTTACCCAGTAGT  50

seq1  ATAAAAATTCATATCGTTGGT-AATCTAGACTCATGGACTGTGGCAAAGA  96
      ||||||| ||||||||||||| ||||||||||||||||||||||||||||
seq2  ATAAAAAATCATATCGTTGGTAAATCTAGACTCATGGACTGTGGCAAAGA  100

seq1  CAACCATGATAGTTTATAAGAGCCGAAGGGATGTACTTCAAGCTCTTGAG  146
      |||||||||||| |||| ||||||||||||||||||||||||||||||||
seq2  CAACCATGATAG-TTATTAGAGCCGAAGGGATGTACTTCAAGCTCTTGAG  149

seq1  ACTGTGAACT-GTCAACATATCCGAGTTGAGTGTTCTGGAAAACTGACTT  195
      |||||||||| |||||||||||||||||||||||||||||||||||||| 
seq2  ACTGTGAACTGGTCAACATATCCGAGTTGAGTGTTCTGGAAAACTGACT-  198

seq1  ATTTAACGTAACTTGGTGAGTTGTGAGGCACTTCTGT-GGAGCCGTAGAC  244
        ||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  -ATTAACGTAACTTGGTGAGTTGTGAGGCACTTCTGTGGGAGCCGTAGAC  247

seq1  ACAAGGGTGTGATTCTGAAACTGTAATGTTAAGCGGCGTATCTCCAAGAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGTGTGATTCTGAAACTGTAATGTTAAGCGGCGTATCTCCAAGAT  297

seq1  GCCATGAGAGTCCATCTCGCAGCATTCTAGCTACATAACTGACCAGGAAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGAGAGTCCATCTCGCAGCATTCTAGCTACATAACTGACCAGGAAT  347

seq1  AGGATTGAACGCTGAGC-TTTAAAATTCACTGTGGATAATGAGCTAGTTA  393
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGGATTGAACGCTGAGCTTTTAAAATTCACTGTGGATAATGAGCTAGTTA  397

seq1  ATGCTAAAAAAGAAACTCGTGTAATGTCGGGTTGTCTCTGGAAGTCGTCT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAAAAAAGAAACTCGTGTAATGTCGGGTTGTCTCTGGAAGTCGTCT  447

seq1  TTCTAAACACCCCCCCACGCCCCCCGAGAGCACAGGCACTCTCAACTGAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAACACCCCCCCACGCCCCCCGAGAGCACAGGCACTCTCAACTGAA  497

seq1  CACTTGTCTCTGTGTCTCTCTGTCTCTGTCTCGCTCTCCTTCAGTCTGAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGTCTCTGTGTCTCTCTGTCTCTGTCTCGCTCTCCTTCAGTCTGAA  547

seq1  AGACTTTGTGGTTTGAAGGCTCGATGGCCTCCTTTATTCCTCATTTCCTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTGTGGTTTGAAGGCTCGATGGCCTCCTTTATTCCTCATTTCCTT  597

seq1  ATGTGGCTTTCTACTCTTATAAATGGCTGCCCGTTTGCTTCCGAAGTGGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCTTTCTACTCTTATAAATGGCTGCCCGTTTGCTTCCGAAGTGGT  647

seq1  ATGTACCTCTTAGCAGAGCTGCAATTACCCATAGCTCTTCTTTCATGGAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACCTCTTAGCAGAGCTGCAATTACCCATAGCTCTTCTTTCATGGAT  697

seq1  CTGATGTGAGTTTTGACTGAGAAAGTTGGAATTGCCAAGGATCCCCACAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTGAGTTTTGACTGAGAAAGTTGGAATTGCCAAGGATCCCCACAG  747

seq1  TGTAGAAAGGGTATACAGGGACCCAAGAAGCAAGTGGACACAGCTGCTTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAAGGGTATACAGGGACCCAAGAAGCAAGTGGACACAGCTGCTTT  797

seq1  AAGAATAAAGCATAATCTCTCTAGCATGTCCAGAGTAAAAATCCTCTCTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAAAGCATAATCTCTCTAGCATGTCCAGAGTAAAAATCCTCTCTT  847

seq1  ATAAGTATATAAGCATATAAATTATCCAAACGTGTGATTAATTTTGAATG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTATATAAGCATATAAATTATCCAAACGTGTGATTAATTTTGAATG  897

seq1  GGTTTTTCCCTTTGGATTCTACAGGAAAAGTGATGTTCCTATTCAGTTTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTCCCTTTGGATTCTACAGGAAAAGTGATGTTCCTATTCAGTTTT  947

seq1  CTCACTATGGCAAATGCTGACATTTTCTGGAGCCAAACATTCCAATGGCT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTATGGCAAATGCTGACATTTTCTGGAGCCAAACATTCCAATGGCT  997

seq1  ATCATCAGGATATCTTTCTGCAGTGAATTC  1023
      ||||||||||||||||||||||||||||||
seq2  ATCATCAGGATATCTTTCTGCAGTGAATTC  1027

seq1: chr18_62711281_62712057
seq2: B6Ng01-343J22.g_66_841

seq1  GAATTCTTGTTTACAGAAGGAATTACAAGTAAACCATGTGGCTGCTTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTTACAGAAGGAATTACAAGTAAACCATGTGGCTGCTTTCC  50

seq1  TCTGCAGCTTTTGAATTGTTGTACTACATTACCCTCCTATCAAAACAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGCTTTTGAATTGTTGTACTACATTACCCTCCTATCAAAACAGAT  100

seq1  GCCACCCTGCTAAGACCAGCTGTTTCTGCTTGCAAACAGTCATCACGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCCTGCTAAGACCAGCTGTTTCTGCTTGCAAACAGTCATCACGTGC  150

seq1  AGCCTTGATTACTGCTGATATTTCTTTACTTAATAGGTGTGGGAGAGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGATTACTGCTGATATTTCTTTACTTAATAGGTGTGGGAGAGGAC  200

seq1  ACTGAGCCCTCACCTGGGTAGCCCGACACTCCTTCCAGCCATCCTTGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCCCTCACCTGGGTAGCCCGACACTCCTTCCAGCCATCCTTGCCC  250

seq1  CTTGCTCCCAAGGGTCTCAGGGACGTGCTAGAGTATATAGGCTGGGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCCCAAGGGTCTCAGGGACGTGCTAGAGTATATAGGCTGGGAAAA  300

seq1  AAAGGGGTTTATCTCTGCATCCATGGAGGAGTGATCATCTGTGTTGGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGTTTATCTCTGCATCCATGGAGGAGTGATCATCTGTGTTGGGTG  350

seq1  CTGACATTCATTGCTCTAGGGCCACTCGTGCTTCCACCCACATCCCCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATTCATTGCTCTAGGGCCACTCGTGCTTCCACCCACATCCCCTCA  400

seq1  CCCATGGTTTGTAAGTAAGCCTAAGTAACTCCTTGGGTCCTCGGAGTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGTTTGTAAGTAAGCCTAAGTAACTCCTTGGGTCCTCGGAGTTAA  450

seq1  CTGTGGTGCACTCAGACTTTGGCTTGCCATTTCTTGGGCGGGGAGGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTGCACTCAGACTTTGGCTTGCCATTTCTTGGGCGGGGAGGCAGG  500

seq1  ATAAGAGAAAGTATGAGATAGCTGCCAAACAGCCCTTGCTCATCTGAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGAAAGTATGAGATAGCTGCCAAACAGCCCTTGCTCATCTGAAAC  550

seq1  TTTGAACACATGGAGAGACTAGGCTGTAAAGAAGGAACAGTCGAGAGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACACATGGAGAGACTAGGCTGTAAAGAAGGAACAGTCGAGAGGTA  600

seq1  CATGTAATAGAAAATAGCAATCAGGTACTGAAGAGGAAGGAAGGAGGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAATAGAAAATAGCAATCAGGTACTGAAGAGGAAGGAAGGAGGGAA  650

seq1  GGGAGGGAGTGAGGTAGAGAAAGAAGAGAAGAGAAGGGAAAGAAAGAAAG  700
      |||||||||||||||||| |||||||||||||||||||||| ||||||||
seq2  GGGAGGGAGTGAGGTAGAAAAAGAAGAGAAGAGAAGGGAAATAAAGAAAG  700

seq1  ATCTCCACATGCATGCCTCCAACACACACACATACACACACACACACACA  750
      |||||||  || ||| |||||||||||||||||||||||||||||||| |
seq2  ATCTCCATTTGTATGTCTCCAACACACACACATACACACACACACACA-A  749

seq1  CTAAGTAAATTAGTAAATGCAAAGAAA  777
       ||||||| || |||||  ||||||||
seq2  ATAAGTAATTTCGTAAAGCCAAAGAAA  776