BAC Information

Click to search

BAC

Clone NameB6Ng01-343K18
Chromosome18 (Build37)
Map Location 5,464,217 - 5,465,307
singlet/doubletsinglet
Overlap genenone
Upstream geneEG664931, LOC100039354, LOC433157, 9430020K01Rik, LOC268988, Svil, Zfp438
Downstream geneLOC100039442, Zeb1, EG664925, Arhgap12, Kif5b, LOC100039469, EG621100, LOC665028, EG622152, Epc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343K18.bB6Ng01-343K18.g
ACCGA126391GA126392
length1,0331,081
definitionB6Ng01-343K18.b B6Ng01-343K18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgcactaaacccatctggtcctgggttgggtttttttttttttt
tttggttgggagactattaatgaatgtttctatttctttaggggatatct
gactgtgtagatcatgaatctgatcctggtttaactttggtacctggtat
ctatctagaaaattgtccatttcatccaggttttccatttttggtgagta
taggcttttgtagtaggatctgatgatttgattttctcagattctgttgt
tatgtctcccttttcatttttgattttattaatttggatactatccctgt
gccctctagtgagtctgactaagggtgtatctatcttgttggttttctca
aagaaccagctcatgatttggttgattctttgtatagttctttttgttac
cacttggttgatttcagccctgagtttgattatttcctgctgtctactcc
tctttggtgaatttgcttccttttgttctagagctttttaggcatgctgt
caagctgctagtgtatgctctttccagtttccttttggagacactcaaag
ctaggagttttcctcttaggactgcttttattgtgtcccataagtttggg
tatgttgtggcttcattttcattaaattctaaaaagtctttttttcttta
tttcttccttgaccaagttatcactgagtagaatgttgttcagcttccat
atgtatgtgggctttctattatttctattatttacttgttattgtagatc
agaattagtctgtggtgatctgataggatgcatgggattatttcaatatt
tttgtatttgttaaggcctgttttgtgaccctatcatatggtcaattttg
gagaaggtaccttgagttagtgagaaaggtataatccttttgtttcagga
taaaaatgtcttatagatatctgtaattccatcttgtttcataaccttct
attatttcactgtctctgtttagtttctgttccaggatctggccattgat
gaaagtggggtggttgaatactcccacttataa
gaattcatcccagggaaataccttgtaactatccagatccaccagacagg
gcagaccagacagatccatgtctctcagagctgagaagacagggatcaga
ttaagcaggtcacaggagtgaaagtctgcttgagagaagggagctgtgtg
gatataatattccagaaacacacagagactccatatgagacagcagctat
ctcctggagagaaagtaaaagccacccagtaggagtaaggaacagagtaa
gtccagagatcatctaggctagagtgaaaaatgctggaagtcatagagcc
ctgggcagaacacatgcaaatattctgtctcagtagtgtgacacaattag
cagcctactgtggtctcctaggtattactaaatcaaacttgaaaggtaac
tgtttccaagtaagtcagttctgacccagaatagagtatgaaaatatttc
cattgttacaaatatatgtggcacccaagacctggaatgtacagtcatga
ccaggcactgagttctgaagataatttctccctgaaaggtccaagggtca
aaaccactgagagggaaagagcagatcactctgacagctgggctttgtgc
ttagaccacaagtctacgtttgactcattcactgttaagtcgctatgtag
gagacacaagaccatgaagtctctttaaggagaagagtcagtgggatatc
acactggaagggactgaggctctgataagaactagattaattaccatgag
agagcaggttataaaacccggccataccactggcttggcctcttcacact
tggctcacctctcctgagtgtgctcccaccttgtgaagccatccaccatg
ttacagcacttcaagagacttccgatctagaatctaatagtctgtccagc
tatgaacaaagcataagtcttgtctcctgcatcatcacgtcataaagttc
ctggtctcagatactttgcacatacccaaagtaatctaaaacaatgggca
cacagaacttgggagacttgactcatggtcagaacgtatctatgagccag
cagtattgaatgacatatacatgacacatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_5464217_5465307
seq2: B6Ng01-343K18.g_67_1147 (reverse)

seq1  TGATGTGTCATGTATTATGTCATTCATACCTTGGCTTGGCTCATAGATTC  50
      |||||||||||||| |||||||||||   ||  || ||||||||||| | 
seq2  TGATGTGTCATGTA-TATGTCATTCAATACT--GC-TGGCTCATAGA-TA  45

seq1  CCTTCTGACCATGGGTCAAGTTCTCCCAAGTTTCTGTGTGCCCATTGTTT  100
      | ||||||||||| |||||| ||||||||| |||||||||||||||||||
seq2  CGTTCTGACCATGAGTCAAG-TCTCCCAAG-TTCTGTGTGCCCATTGTTT  93

seq1  TAGATTACTTTGGGTTATTGTTGCAAAGTATCTGAGACCAGGAACTTTAT  150
      |||||||||||||| |||   |||||||||||||||||||||||||||||
seq2  TAGATTACTTTGGG-TAT--GTGCAAAGTATCTGAGACCAGGAACTTTAT  140

seq1  GACGTGATGATGCAGGAGACAAGACTTATGCTTTGTTCATAGCTGGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGATGATGCAGGAGACAAGACTTATGCTTTGTTCATAGCTGGACAG  190

seq1  ACTATTAGATTCTAGATCGGAAGTCTCTTGAAGTGCTGTAACATGGTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTAGATTCTAGATCGGAAGTCTCTTGAAGTGCTGTAACATGGTGGA  240

seq1  TGGCTTCACAAGGTGGGAGCACACTCAGGAGAGGTGAGCCAAGTGTGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCACAAGGTGGGAGCACACTCAGGAGAGGTGAGCCAAGTGTGAAG  290

seq1  AGGCCAAGCCAGTGGTATGGCCGGGTTTTATAACCTGCTCTCTCATGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAAGCCAGTGGTATGGCCGGGTTTTATAACCTGCTCTCTCATGGTA  340

seq1  ATTAATCTAGTTCTTATCAGAGCCTCAGTCCCTTCCAGTGTGATATCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATCTAGTTCTTATCAGAGCCTCAGTCCCTTCCAGTGTGATATCCCA  390

seq1  CTGACTCTTCTCCTTAAAGAGACTTCATGGTCTTGTGTCTCCTACATAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCTTCTCCTTAAAGAGACTTCATGGTCTTGTGTCTCCTACATAGC  440

seq1  GACTTAACAGTGAATGAGTCAAACGTAGACTTGTGGTCTAAGCACAAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAACAGTGAATGAGTCAAACGTAGACTTGTGGTCTAAGCACAAAGC  490

seq1  CCAGCTGTCAGAGTGATCTGCTCTTTCCCTCTCAGTGGTTTTGACCCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGTCAGAGTGATCTGCTCTTTCCCTCTCAGTGGTTTTGACCCTTG  540

seq1  GACCTTTCAGGGAGAAATTATCTTCAGAACTCAGTGCCTGGTCATGACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTTCAGGGAGAAATTATCTTCAGAACTCAGTGCCTGGTCATGACTG  590

seq1  TACATTCCAGGTCTTGGGTGCCACATATATTTGTAACAATGGAAATATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCCAGGTCTTGGGTGCCACATATATTTGTAACAATGGAAATATTT  640

seq1  TCATACTCTATTCTGGGTCAGAACTGACTTACTTGGAAACAGTTACCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTCTATTCTGGGTCAGAACTGACTTACTTGGAAACAGTTACCTTT  690

seq1  CAAGTTTGATTTAGTAATACCTAGGAGACCACAGTAGGCTGCTAATTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTGATTTAGTAATACCTAGGAGACCACAGTAGGCTGCTAATTGTG  740

seq1  TCACACTACTGAGACAGAATATTTGCATGTGTTCTGCCCAGGGCTCTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTACTGAGACAGAATATTTGCATGTGTTCTGCCCAGGGCTCTATG  790

seq1  ACTTCCAGCATTTTTCACTCTAGCCTAGATGATCTCTGGACTTACTCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAGCATTTTTCACTCTAGCCTAGATGATCTCTGGACTTACTCTGT  840

seq1  TCCTTACTCCTACTGGGTGGCTTTTACTTTCTCTCCAGGAGATAGCTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACTCCTACTGGGTGGCTTTTACTTTCTCTCCAGGAGATAGCTGCT  890

seq1  GTCTCATATGGAGTCTCTGTGTGTTTCTGGAATATTATATCCACACAGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATATGGAGTCTCTGTGTGTTTCTGGAATATTATATCCACACAGCT  940

seq1  CCCTTCTCTCAAGCAGACTTTCACTCCTGTGACCTGCTTAATCTGATCCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTCTCAAGCAGACTTTCACTCCTGTGACCTGCTTAATCTGATCCC  990

seq1  TGTCTTCTCAGCTCTGAGAGACATGGATCTGTCTGGTCTGCCCTGTCTGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTCAGCTCTGAGAGACATGGATCTGTCTGGTCTGCCCTGTCTGG  1040

seq1  TGGATCTGGATAGTTACAAGGTATTTCCCTGGGATGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTGGATAGTTACAAGGTATTTCCCTGGGATGAATTC  1081