BAC Information

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BAC

Clone NameB6Ng01-344B11
Chromosome18 (Build37)10 (Build37)
Map Location 29,334,666 - 29,334,75929,635,640 - 29,636,886
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG271505, EG625997, BC051408
Downstream geneLOC100040930, 4930578E11Rik, LOC666073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344B11.bB6Ng01-344B11.g
ACCGA126683GA126684
length6101,226
definitionB6Ng01-344B11.b B6Ng01-344B11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(29,334,666 - 29,334,759)(29,635,640 - 29,636,886)
sequence
gaattctttgtttagctctgtactccattttttaatagggttatttggtt
ctctggagtctaacttcttgagttctttgtatatatgggatattagccct
ctattggatttaggattggtaaagatcttgtcccaatatgttggttgcct
ttttgtcttattgacagtgttctttgccttacagaagctttgcaatttta
tgaggtctcatttgtcaatttttgatcttagagtacaagccattggttcc
aggaatttttcccctgtgcccatatgtttgaggctcttcctcactttctc
ctctctaagtttcagagtctctagttttatgtggatgtccttcatccact
tgaacttgagctttgtacaggagataaaaatggatagatttgccttctat
attctaactgccagttgagccagcaccatttgttgaaaatgctgtctttt
ttccacaggatgaggtgatttttaaatatctctctctctctctctctctc
tctctctctctctctctctctctctctctctctctctctgtatatatata
tatatatatatatctccatacatctgtatatagagatagagagagagaga
gagtgtgtgt

gaattctttgagagcatgattagttttaaaactgaagaaactcaacttcc
tgaaaatggtgaaatataaaggaaaagtcatacaggggaaactctactac
caaatattatttgctatcatgacttagtagatggctaaaaatgacacaat
gaaaagtttggaaacacgggttaatacatatgtcagagtcaacatagcaa
gtgacagagaaaacaaagaaatcattaaacacctgtgtctaataggataa
tttgccatatatagaaaacatgagatggaatactatctcgggtcagtatg
ttccattttggtgggataagatgatgtactttaaaatagtaaggaaatta
tgaatatgtctacccgtaacatcatgaatgacaacttcttcttcttcttt
tttttttttttttttggtttggttttggttttggttttttgtttttcgag
acagggtttctctctatagctttcctggaactcactctgtagaccaggct
ggtctcaaactcagaaatccatctgcctctgcctcccaaaaggcatgtgc
caccactgcctggcgaatgacaacttcttttaagtaacatatttaaaaaa
caaaaaacaaaaaacaaaaaaaaagaaagaaacaaacaaacaaataaaca
aaaaaagcacatttgatttgtatgtttattggctttactttacatctact
agaaaagctaaaaagaatattattattctagaaagttgcaaagcacactg
ccaaaaacattattttaaccctctaaataataaagaattgtttttatgga
taaaagaaaaaaacaaaacaccataaagaaagaaacacagataagcatag
actttgataaaatcttaaaataataattggtagtgaaaatgtaaattaac
tggacttttttttttttaccattttgtattctctagaataacagaatcta
aacttttcaaggaatagccagggattaggaccagtgaaaatcataacatg
ttttgtagggataaaatggatccactatttaaaatctgctgatgatcatg
tgataaagttgttctacagtaactttgttgttgaataagtggagaaaatt
caggtcatagctatctgcattatttattattgccaagcagttcatactgc
tgggtcttcctatctctcctaggaagggttagtagcgaacatagcttatc
aaactctctctaggtgagaaccctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_29334666_29334759
seq2: B6Ng01-344B11.b_552_658 (reverse)

seq1  ACACACACTCTCTCTCTCTC----TCTCTATATATATAT--------ATA  38
      ||||||||||||||||||||    |||||||||| | ||        |||
seq2  ACACACACTCTCTCTCTCTCTCTATCTCTATATACAGATGTATGGAGATA  50

seq1  TATATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  88
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TATATATATATATATATATACAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  100

seq1  GA-AGAG  94
      || ||||
seq2  GAGAGAG  107


seq1: chr10_29635640_29636886
seq2: B6Ng01-344B11.g_65_1290 (reverse)

seq1  GCAGG--TCTCACTTAGA-AGAGTTGAATAAGCTATGGTCTGGCTAACTT  47
      |||||  |||||| |||| ||||||  |||||||||| ||  ||| ||| 
seq2  GCAGGGTTCTCACCTAGAGAGAGTTTGATAAGCTATGTTC--GCT-ACTA  47

seq1  ACCCTCTCTAGGAAGGAGGATTTAGAGAAAGACACAAGCAGTATAGAAAA  97
      |||||  ||||||  |||     | || ||||| | ||||||||    ||
seq2  ACCCTTCCTAGGA--GAG-----ATAGGAAGAC-CCAGCAGTAT---GAA  86

seq1  CTGCTTTTGGC-ATTATAAATAATGGCCAGATAGCTATGA-CTGAAAATT  145
      ||||  ||||| || ||||||||||  ||||||||||||| |||  ||||
seq2  CTGC--TTGGCAATAATAAATAATG--CAGATAGCTATGACCTG--AATT  130

seq1  TTCT-CACTTAATCAAACACAAAAGTTACTGTAAGAAACAACTTTATCAC  194
      |||| |||||| || ||||  ||||||||||||   ||||||||||||||
seq2  TTCTCCACTTATTC-AACAACAAAGTTACTGTA--GAACAACTTTATCAC  177

seq1  ATGATCATCAGCAGATTTTTAAATTAGTTGAATCCATTTTATCCCTAACA  244
      |||||||||||||||||||  || ||| || ||||||||||||||| |||
seq2  ATGATCATCAGCAGATTTT--AAATAG-TGGATCCATTTTATCCCT-ACA  223

seq1  AAACATGTTATGATTTTTCACTGGTCCTAATCCCTGGCTA-TCCTTGAAA  293
      ||||||||||||| |||||||||||||||||||||||||| |||||| ||
seq2  AAACATGTTATGA-TTTTCACTGGTCCTAATCCCTGGCTATTCCTTG-AA  271

seq1  AAGTTTAGAATTCTGTTATTCTAGAGAATACAAAATGGTAAAAAAAAAAA  343
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTAG-ATTCTGTTATTCTAGAGAATACAAAATGGTAAAAAAAAAAA  320

seq1  AGTCCAGTTAATTTACATTTTCACTACCAATTATTATTTTAAGA-TTTAT  392
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGTCCAGTTAATTTACATTTTCACTACCAATTATTATTTTAAGATTTTAT  370

seq1  CAAAGTCTATGCTTATCTGTGTTTCTTTCTTTATGGTGTTTTGTTTTTTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCTATGCTTATCTGTGTTTCTTTCTTTATGGTGTTTTGTTTTTTT  420

seq1  CTTTTATCCATAAAAACAATTCTTTATTATTTAGAGGGTTAAAATAATGT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATCCATAAAAACAATTCTTTATTATTTAGAGGGTTAAAATAATGT  470

seq1  TTTTGGCAGTGTGCTTTGCAACTTTCTAGAATAATAATATTCTTTTTAGC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCAGTGTGCTTTGCAACTTTCTAGAATAATAATATTCTTTTTAGC  520

seq1  TTTTCTAGTAGATGTAAAGTAAAGCCAATAAACATACAAATCAAATGTGC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGTAGATGTAAAGTAAAGCCAATAAACATACAAATCAAATGTGC  570

seq1  TTTTTTTGTTTATTTGTTTGTTTGTTTCTTTCTTTTTTTTTGTTTTTTGT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGTTTATTTGTTTGTTTGTTTCTTTCTTTTTTTTTGTTTTTTGT  620

seq1  TTTTTGTTTTTTAAATATGTTACTTAAAAGAAGTTGTCATTCGCCAGGCA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTTTAAATATGTTACTTAAAAGAAGTTGTCATTCGCCAGGCA  670

seq1  GTGGTGGCACATGCCTTTTGGGAGGCAGAGGCAGATGGATTTCTGAGTTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGCACATGCCTTTTGGGAGGCAGAGGCAGATGGATTTCTGAGTTT  720

seq1  GAGACCAGCCTGGTCTACAGAGTGAGTTCCAGGAAAGCTATAGAGAGAAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCAGCCTGGTCTACAGAGTGAGTTCCAGGAAAGCTATAGAGAGAAA  770

seq1  CCCTGTCTCGAAAAACAAAAAACCAAAACCAAAACCAAACCAAAAAAAAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTCGAAAAACAAAAAACCAAAACCAAAACCAAACCAAAAAAAAA  820

seq1  AAAAAAAAAGAAGAAGAAGAAGTTGTCATTCATGATGTTACGGGTAGACA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGAAGAAGAAGAAGTTGTCATTCATGATGTTACGGGTAGACA  870

seq1  TATTCATAATTTCCTTACTATTTTAAAGTACATCATCTTATCCCACCAAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATAATTTCCTTACTATTTTAAAGTACATCATCTTATCCCACCAAA  920

seq1  ATGGAACATACTGACCCGAGATAGTATTCCATCTCATGTTTTCTATATAT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACATACTGACCCGAGATAGTATTCCATCTCATGTTTTCTATATAT  970

seq1  GGCAAATTATCCTATTAGACACAGGTGTTTAATGATTTCTTTGTTTTCTC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATTATCCTATTAGACACAGGTGTTTAATGATTTCTTTGTTTTCTC  1020

seq1  TGTCACTTGCTATGTTGACTCTGACATATGTATTAACCCGTGTTTCCAAA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTTGCTATGTTGACTCTGACATATGTATTAACCCGTGTTTCCAAA  1070

seq1  CTTTTCATTGTGTCATTTTTAGCCATCTACTAAGTCATGATAGCAAATAA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATTGTGTCATTTTTAGCCATCTACTAAGTCATGATAGCAAATAA  1120

seq1  TATTTGGTAGTAGAGTTTCCCCTGTATGACTTTTCCTTTATATTTCACCA  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGTAGTAGAGTTTCCCCTGTATGACTTTTCCTTTATATTTCACCA  1170

seq1  TTTTCAGGAA-TTGAGTTTCTTCAGTTTTAAAACTAATCATGCTCTCAAA  1241
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGGAAGTTGAGTTTCTTCAGTTTTAAAACTAATCATGCTCTCAAA  1220

seq1  GAATTC  1247
      ||||||
seq2  GAATTC  1226


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