BAC Information

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BAC

Clone NameB6Ng01-344C18
Chromosome18 (Build37)
Map Location 48,239,938 - 48,241,144
singlet/doubletsinglet
Overlap geneLOC383326
Upstream geneCommd10, EG628438, LOC667120, Sema6a, LOC628477, 9130209A04Rik, A730092B10, LOC383325, LOC100042982, LOC100042284, LOC100042301, EG433182
Downstream geneLOC100042323, LOC545470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344C18.bB6Ng01-344C18.g
ACCGA126745GA126746
length1,1871,202
definitionB6Ng01-344C18.b B6Ng01-344C18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaccctggagctggccactaaatgtttgcaatcttggaagcttc
ctcaaaccttaatgaaattgtgagtagtctcccctgcttcttttgagata
gagtttcaccatataaagtagaatggccttgaacttgccgtcctcaagct
tcagcctcctacatagtagatttacaggcatggctccacgatgcctagta
aacacacactgaatatgcctagtatgtacacactgaatacataaatgaat
gtttaagaaataagttatgagagaaggtatagtgtatgttctcactaata
tcaaagtgaaaactggactaaactggataataaattataaaagacaatgt
gatcacccaagaagaagttcaacaagaggtgcatggtttcagactataaa
cagagtgtgatgcttgaggttcacaattacaataaagattttattcaaat
acttggggagtggatattcttttacagacatgtaagacaggagaccccaa
aagttgtcaggagagatagctctcttattctctgctaccatgtcattagt
atgggatcatttagaaagtgcgagggaaatttatgtgctatcacggaaca
agacaaatacaacctatgcaagattgctctgtcagtactttggcctcctt
tgttatccaaagatgttaactaggatttagtttgtgtagcagaatcccct
caaaactagcattaaacgagccagttctttcacttgataaatacgtatgt
atctacagtatgacctgttgtattatgaactcaattataaacgtcactcc
aaagtaattaaaagggagctttcactgtaaaagtgacctcttcatcacac
ttgaaattacattttcatgaattcagtgtaatgcacttgctacccaaact
gcagctaatttgctagctgagactgaatccacgagcaccctcctatcctc
cacattagtgatcagtcattgtcatttgtcttccattggatctcttctag
ctttcccttaatttctcagacatctaagatgtagtctcattattagttat
ttttccaactgttcttgtacatggataccaaaaggattgctgaaaaacta
tttattatgctattcacaatgaactgactcatagttcaggagcttgacct
ctaatggtttggacttaagttcaattccataaatgaa
gaattctccgggccactgtgaagctaggcaagaaaaaaacacggaattag
gatagggaagcagaattaaagcatgctaaaaattacatgtaagtaaatac
atatagataaataaataaatatcaataatggggagggggagaaactatta
ttcaacaaacaatatttgagagattgatttacacctaaagaaattaatga
attattaccttacatcaggagaaacccaaatcaattccagataatataaa
gggctgaagagatggctaagtgattaagagcacggattgctcttccagag
gtcctgagttcaattcccagcaaccacatggtagctcataaccaccatct
gtaatgggatctgatgccctcttctggtgtgtcagaagacaaagatggtg
tactcatataaaataaataaaaatcaaaataacaccaaatttgaatctgt
actgaaaagttgctaaaatttcttacaatgaaatgattcagtagcattag
tataagaaaacattattaaaactaactcacatgttaaatttaataagaca
ttaccttttaatttcaaatcttcattaaccccatatctgatagagggcta
atatccaaaaaaatacgaaaaaatcccaataaattaactttcaaaaaaca
aataacacaattttaaaatggtgtacagtgctaaacagagaagtcacagc
tgaagaatctggaatagccaagaaacacctaaaaaaaatgttcaaagtcc
ttggtcattagggaaattcaaatcaaaatgaccatgagattacaccttac
accaatcagaatggctaagatcaaaacctcaggtgacaacacatgttggc
aaggatgtggagaagcaggaacactcctccactgctggtgggattgcaaa
caggtacaaccactctgaaaatcaatctggtggtttctcagaaaattgga
aatagatctacctgaagactcagctataccacttttgggcatatatccaa
aagatgccccaccataccactaggacaggtgctctgctatgttcatgtat
ctgttgtgacagcagatgctggaaacacatcagatgtccgcaactgagat
gcatacgcaatgtgttcattcacatggaaagagattcagctataggatga
ggccatcaggtaccttttcagccagattggaagggacccttgagaattat
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_48239938_48241144
seq2: B6Ng01-344C18.b_43_1229

seq1  GAATTCTACCCTGGAGCTGGCCACTAAATGTTTGCAATCTTGGAAGCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACCCTGGAGCTGGCCACTAAATGTTTGCAATCTTGGAAGCTTC  50

seq1  CTCAAACCTTAATGAAATTGTGAGTAGTCTCCCCTGCTTCTTTTGAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACCTTAATGAAATTGTGAGTAGTCTCCCCTGCTTCTTTTGAGATA  100

seq1  GAGTTTCACCATATAAAGTAGAATGGCCTTGAACTTGCCGTCCTCAAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCACCATATAAAGTAGAATGGCCTTGAACTTGCCGTCCTCAAGCT  150

seq1  TCAGCCTCCTACATAGTAGATTTACAGGCATGGCTCCACGATGCCTAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTCCTACATAGTAGATTTACAGGCATGGCTCCACGATGCCTAGTA  200

seq1  AACACACACTGAATATGCCTAGTATGTACACACTGAATACATAAATGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACACTGAATATGCCTAGTATGTACACACTGAATACATAAATGAAT  250

seq1  GTTTAAGAAATAAGTTATGAGAGAAGGTATAGTGTATGTTCTCACTAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAGAAATAAGTTATGAGAGAAGGTATAGTGTATGTTCTCACTAATA  300

seq1  TCAAAGTGAAAACTGGACTAAACTGGATAATAAATTATAAAAGACAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTGAAAACTGGACTAAACTGGATAATAAATTATAAAAGACAATGT  350

seq1  GATCACCCAAGAAGAAGTTCAACAAGAGGTGCATGGTTTCAGACTATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACCCAAGAAGAAGTTCAACAAGAGGTGCATGGTTTCAGACTATAAA  400

seq1  CAGAGTGTGATGCTTGAGGTTCACAATTACAATAAAGATTTTATTCAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGTGATGCTTGAGGTTCACAATTACAATAAAGATTTTATTCAAAT  450

seq1  ACTTGGGGAGTGGATATTCTTTTACAGACATGTAAGACAGGAGACCCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGGAGTGGATATTCTTTTACAGACATGTAAGACAGGAGACCCCAA  500

seq1  AAGTTGTCAGGAGAGATAGCTCTCTTATTCTCTGCTACCATGTCATTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTCAGGAGAGATAGCTCTCTTATTCTCTGCTACCATGTCATTAGT  550

seq1  ATGGGATCATTTAGAAAGTGCGAGGGAAATTTATGTGCTATCACGGAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATCATTTAGAAAGTGCGAGGGAAATTTATGTGCTATCACGGAACA  600

seq1  AGACAAATACAACCTATGCAAGATTGCTCTGTCAGTACTTTGGCCTCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAATACAACCTATGCAAGATTGCTCTGTCAGTACTTTGGCCTCCTT  650

seq1  TGTTATCCAAAGATGTTAACTAGGATTTAGTTTGTGTAGCAGAATCCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCCAAAGATGTTAACTAGGATTTAGTTTGTGTAGCAGAATCCCCT  700

seq1  CAAAACTAGCATTAAACGAGCCAGTTCTTTCACTTGATAAATACGTATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTAGCATTAAACGAGCCAGTTCTTTCACTTGATAAATACGTATGT  750

seq1  ATCTACAGTATGACCTGTTGTATTATGAACTCAATTATAAACGTCACTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACAGTATGACCTGTTGTATTATGAACTCAATTATAAACGTCACTCC  800

seq1  AAAGTAATTAAAAGGGAGCTTTCACTGTAAAAGTGACCTCTTCATCACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAATTAAAAGGGAGCTTTCACTGTAAAAGTGACCTCTTCATCACAC  850

seq1  TTGAAATTACATTTTCATGAATTCAGTGTAATGCACTTGCTACCCAAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATTACATTTTCATGAATTCAGTGTAATGCACTTGCTACCCAAACT  900

seq1  GCAGCTAATTTGCTAGCTGAGACTGAATCCACGAGCACCCTCCTATCCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTAATTTGCTAGCTGAGACTGAATCCACGAGCACCCTCCTATCCTC  950

seq1  CACATTAGTGATCAGTCATTGTCATTTGTCTTCCATTGGTTCTCTTCTTA  1000
      ||||||||||||||||||||||||||||||||||||||| ||||||| ||
seq2  CACATTAGTGATCAGTCATTGTCATTTGTCTTCCATTGGATCTCTTC-TA  999

seq1  GCTTTCCCTTAATTTTCTTCAGACATCTAAGATTGTAGTCTTCATTATTA  1050
      |||||||||||||||   |||||||||||||| ||||||| |||||||||
seq2  GCTTTCCCTTAATTT--CTCAGACATCTAAGA-TGTAGTC-TCATTATTA  1045

seq1  GTTA-TTTTCCAACTGTTC-TGTACAATGGATACCAAAAAGGAATTGCTG  1098
      |||| |||||||||||||| ||||| |||||||||||||  | |||||||
seq2  GTTATTTTTCCAACTGTTCTTGTAC-ATGGATACCAAAA--GGATTGCTG  1092

seq1  AAATACTATTTAATTATTGCTATTCACATGAAAATTAAACTTCATTAAGT  1148
      ||| ||||||| |||| |||||||||||   || | |    ||||  || 
seq2  AAAAACTATTT-ATTA-TGCTATTCACAATGAACTGA---CTCAT--AG-  1134

seq1  TTCAGGAGGCTTGACCTCTTATATGTGTTTTGAAATTTTAAGTTCAATT-  1197
      ||||||| ||||||||||| |    || |||| |   |||||||||||| 
seq2  TTCAGGA-GCTTGACCTCTAA----TGGTTTGGA--CTTAAGTTCAATTC  1177

seq1  CATAAATGAA  1207
      ||||||||||
seq2  CATAAATGAA  1187