BAC Information

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BAC

Clone NameB6Ng01-345E04
Chromosome18 (Build37)
Map Location 32,318,594 - 32,392,541
singlet/doubletdoublet
Overlap geneMap3k2
Upstream geneRit2, EG666130, Syt4, LOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710
Downstream geneErcc3, Bin1, Gypc, LOC100041160, LOC100041170, Tslp, Wdr36, Camk4, Stard4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345E04.bB6Ng01-345E04.g
ACCGA127515GA127516
length8621,104
definitionB6Ng01-345E04.b B6Ng01-345E04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,391,657 - 32,392,541)(32,318,594 - 32,319,701)
sequence
gaattcacatctagtggagattgcagtcagttaaatgctactgttctctc
ctaacttttcttaaaaaggaggtagaaagggtaagaggaagaaataagca
ttaagaaagacataggggccaacacacagaccaaggccagagacactctt
gaggcctagcattttggaaaactcttcattttgttaggtaatctgaatta
caaatataaaataaaattaaggcatacagagaaaaaggcactactaaaaa
ttaacaaatttttttcattgaactttaaccagtgttaaaatcaaataaat
atgaatgtcacatctaaaagtaaatgctaaatttaataggctatcaaaag
aatctgaccttagcataagtgacactagacaagttcaacctctatcaaag
agttcttggtatttcaacacctaaaaaccaaaataaggttttgggtattt
tttttttttccttaaaacaaaaataacaacaacggctggggtgagggaga
atcccaatacagtgtgctaaggaataaatgttccattgtcccaaaacaat
ctgggactgtgttgtatcggaagagcaggttctgacgtgggatatagata
cttgtactctaatcctcttgttcatatctttggagtccataattatggcc
aaaattatctaaaatttcttccttattttttcatataaaaatcctagcat
tttaagcatcactgctaaacttccctaatctgtggatagtgagccatgtt
ccacactgtaattcctgaagaatattatttatgtaacacagtacatccca
ctgttgagtagaaaatgaaaaagattgacctatttttttttcaattgggc
agctgggtgtgg
gaattcaatcacctttctagtttaaagccctcaaagtcttccacacacct
ctgaacatggtcagacctgtcacagcaatacccgaggtcatagtaccaac
tcccatgttagtttcttttctattgctgtgatcaaacactatgactaaag
cagctcatagatgacgtgtttattggacttacattttcagagagttggag
tccacagcggcagagtgaagacacagcagcagaggttgagagttcacatc
tcaaacagtaggcaggaggcggagagcacagtgggaacaggcaaacgtct
tctgaaacctcaaagctgcccgcagtgacaggcctgcttcaacaaggcca
catgttctgatctttcccaaaggatcccaccaactgaggactaagaatta
aaacataggaacttattgaagccattctcattcaagccacaacagaaccc
cagcacagctaccaagcacacttggcaaaagatggtttccgtctttcctc
cctgacacaggtgacgattcagctcattggtgggagcttgacttcacaaa
gaagaatggaagatccaggacatctgagctatttccaggttacctttgat
gaaacaacaacaacaacaacaacaacaacaaccactataactttgataga
aaaagactttctctaaaatttccctcttctttatagtttttttttttcaa
acttagccagcatatgttgatcattttaagtctctaaaaagggtaaattg
ttttccagggtgtacatttgtacaccagtgtgtgcttagtgatggtggaa
gccagaagaaggtgtcaggttccctgcacccagagttgcacacgggttgt
gagcagccatgtggatactgggaattgaaaccctggggccctctagaaaa
gtggtcagtgctctttaacctctgagtcacctttccagcccaaataaact
gttatggtaagcaatggccttcgcatgagttaaggtgacccacctctatc
ttagtcattaagataagtcagagatcagggttcaggagacacttttgcca
tactgctttctggtcagcaagagactggcagagtctcaggtacattttgg
cttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_32391657_32392541
seq2: B6Ng01-345E04.b_45_906 (reverse)

seq1  CCACACCCAGCTTTGCCCATTTAAAAAAAAAATAGGGTCAATCTTTTTCA  50
      |||||||||||  |||||| || ||||||||||| |||||||||||||||
seq2  CCACACCCAGC--TGCCCAATTGAAAAAAAAATA-GGTCAATCTTTTTCA  47

seq1  TTTTCTTACTCAACAGTTGTGATGTACTGTGTTACATTAAATTAATATTC  100
      ||||| |||||||||| || |||||||||||||||||  || ||||||||
seq2  TTTTC-TACTCAACAG-TGGGATGTACTGTGTTACAT--AAATAATATTC  93

seq1  TTCAGGAAATTACAGTTGTGGAACATGGGCAGACAGTTACTTAATGGCAT  150
      |||||| |||||||| ||||||||||||           || | |   ||
seq2  TTCAGG-AATTACAG-TGTGGAACATGG-----------CTCACT---AT  127

seq1  ACCCTAACTCTGAAAGTTTAGCAGTGATGCTTAAAATGCTAGGATTTTTA  200
       | |  | |  | |||||||||||||||||||||||||||||||||||||
seq2  CCACAGATTAGGGAAGTTTAGCAGTGATGCTTAAAATGCTAGGATTTTTA  177

seq1  TATGAAAAAATAAGGAAGAAATTTTAGATAATTTTGGCCATAATTATGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAAAATAAGGAAGAAATTTTAGATAATTTTGGCCATAATTATGGA  227

seq1  CTCCAAAGATATGAACAAGAGGATTAGAGTACAAGTATCTATATCCCACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAGATATGAACAAGAGGATTAGAGTACAAGTATCTATATCCCACG  277

seq1  TCAGAACCTGCTCTTCCGATACAACACAGTCCCAGATTGTTTTGGGACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACCTGCTCTTCCGATACAACACAGTCCCAGATTGTTTTGGGACAA  327

seq1  TGGAACATTTATTCCTTAGCACACTGTATTGGGATTCTCCCTCACCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACATTTATTCCTTAGCACACTGTATTGGGATTCTCCCTCACCCCAG  377

seq1  CCGTTGTTGTTATTTTTGTTTTAAGGAAAAAAAAAAAATACCCAAAACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTGTTGTTATTTTTGTTTTAAGGAAAAAAAAAAAATACCCAAAACCT  427

seq1  TATTTTGGTTTTTAGGTGTTGAAATACCAAGAACTCTTTGATAGAGGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGGTTTTTAGGTGTTGAAATACCAAGAACTCTTTGATAGAGGTTG  477

seq1  AACTTGTCTAGTGTCACTTATGCTAAGGTCAGATTCTTTTGATAGCCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTCTAGTGTCACTTATGCTAAGGTCAGATTCTTTTGATAGCCTAT  527

seq1  TAAATTTAGCATTTACTTTTAGATGTGACATTCATATTTATTTGATTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTAGCATTTACTTTTAGATGTGACATTCATATTTATTTGATTTTA  577

seq1  ACACTGGTTAAAGTTCAATGAAAAAAATTTGTTAATTTTTAGTAGTGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGTTAAAGTTCAATGAAAAAAATTTGTTAATTTTTAGTAGTGCCT  627

seq1  TTTTCTCTGTATGCCTTAATTTTATTTTATATTTGTAATTCAGATTACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTGTATGCCTTAATTTTATTTTATATTTGTAATTCAGATTACCT  677

seq1  AACAAAATGAAGAGTTTTCCAAAATGCTAGGCCTCAAGAGTGTCTCTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATGAAGAGTTTTCCAAAATGCTAGGCCTCAAGAGTGTCTCTGGC  727

seq1  CTTGGTCTGTGTGTTGGCCCCTATGTCTTTCTTAATGCTTATTTCTTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCTGTGTGTTGGCCCCTATGTCTTTCTTAATGCTTATTTCTTCCT  777

seq1  CTTACCCTTTCTACCTCCTTTTTAAGAAAAGTTAGGAGAGAACAGTAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCCTTTCTACCTCCTTTTTAAGAAAAGTTAGGAGAGAACAGTAGCA  827

seq1  TTTAACTGACTGCAATCTCCACTAGATGTGAATTC  885
      |||||||||||||||||||||||||||||||||||
seq2  TTTAACTGACTGCAATCTCCACTAGATGTGAATTC  862

seq1: chr18_32318594_32319701
seq2: B6Ng01-345E04.g_64_1167

seq1  GAATTCAATCACCTTTCTAGTTTAAAGCCCTCAAAGTCTTCCACACACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCACCTTTCTAGTTTAAAGCCCTCAAAGTCTTCCACACACCT  50

seq1  CTGAACATGGTCAGACCTGTCACAGCAATACCCGAGGTCATAGTACCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACATGGTCAGACCTGTCACAGCAATACCCGAGGTCATAGTACCAAC  100

seq1  TCCCATGTTAGTTTCTTTTCTATTGCTGTGATCAAACACTATGACTAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGTTAGTTTCTTTTCTATTGCTGTGATCAAACACTATGACTAAAG  150

seq1  CAGCTCATAGATGACGTGTTTATTGGACTTACATTTTCAGAGAGTTGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCATAGATGACGTGTTTATTGGACTTACATTTTCAGAGAGTTGGAG  200

seq1  TCCACAGCGGCAGAGTGAAGACACAGCAGCAGAGGTTGAGAGTTCACATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGCGGCAGAGTGAAGACACAGCAGCAGAGGTTGAGAGTTCACATC  250

seq1  TCAAACAGTAGGCAGGAGGCGGAGAGCACAGTGGGAACAGGCAAACGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAGTAGGCAGGAGGCGGAGAGCACAGTGGGAACAGGCAAACGTCT  300

seq1  TCTGAAACCTCAAAGCTGCCCGCAGTGACAGGCCTGCTTCAACAAGGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAACCTCAAAGCTGCCCGCAGTGACAGGCCTGCTTCAACAAGGCCA  350

seq1  CATGTTCTGATCTTTCCCAAAGGATCCCACCAACTGAGGACTAAGAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCTGATCTTTCCCAAAGGATCCCACCAACTGAGGACTAAGAATTA  400

seq1  AAACATAGGAACTTATTGAAGCCATTCTCATTCAAGCCACAACAGAACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAGGAACTTATTGAAGCCATTCTCATTCAAGCCACAACAGAACCC  450

seq1  CAGCACAGCTACCAAGCACACTTGGCAAAAGATGGTTTCCGTCTTTCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAGCTACCAAGCACACTTGGCAAAAGATGGTTTCCGTCTTTCCTC  500

seq1  CCTGACACAGGTGACGATTCAGCTCATTGGTGGGAGCTTGACTTCACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACACAGGTGACGATTCAGCTCATTGGTGGGAGCTTGACTTCACAAA  550

seq1  GAAGAATGGAAGATCCAGGACATCTGAGCTATTTCCAGGTTACCTTTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATGGAAGATCCAGGACATCTGAGCTATTTCCAGGTTACCTTTGAT  600

seq1  GAAACAACAACAACAACAACAACAACAACAACCACTATAACTTTGATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAACAACAACAACAACAACAACAACAACCACTATAACTTTGATAGA  650

seq1  AAAAGACTTTCTCTAAAATTTCCCTCTTCTTTATAGTTTTTTTTTTTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTTTCTCTAAAATTTCCCTCTTCTTTATAGTTTTTTTTTTTCAA  700

seq1  ACTTAGCCAGCATATGTTGATCATTTTAAGTCTCTAAAAAGGGTAAATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCCAGCATATGTTGATCATTTTAAGTCTCTAAAAAGGGTAAATTG  750

seq1  TTTTCCAGGGTGTACATTTGTACACCAGTGTGTGCTTAGTGATGGTGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAGGGTGTACATTTGTACACCAGTGTGTGCTTAGTGATGGTGGAA  800

seq1  GCCAGAAGAAGGTGTCAGGTTCCCTGCACCCAGAGTTGCACAC-GGTTGT  849
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCCAGAAGAAGGTGTCAGGTTCCCTGCACCCAGAGTTGCACACGGGTTGT  850

seq1  GAGCAGCCATGTGGATACTGGGAATTG-AACCCTGGGG-CCTCTAGAAAA  897
      ||||||||||||||||||||||||||| |||||||||| |||||||||||
seq2  GAGCAGCCATGTGGATACTGGGAATTGAAACCCTGGGGCCCTCTAGAAAA  900

seq1  GTGGTCAGTGCTC-TTAACCTCTGAGTCACCTTTCCAGCCCAAATAAACT  946
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTGGTCAGTGCTCTTTAACCTCTGAGTCACCTTTCCAGCCCAAATAAACT  950

seq1  GTTATGGTAAGCAATGGCCTTCGCATGAGTTAAGGTGAACCCACCTCTAT  996
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTTATGGTAAGCAATGGCCTTCGCATGAGTTAAGGTG-ACCCACCTCTAT  999

seq1  CTTAGTCATTTAGGAACCAGTTCAGAGATCAGGG-TCCGGAGAACACTTT  1045
      |||||||||| ||  |  || ||||||||||||| || |||| |||||||
seq2  CTTAGTCATTAAG--ATAAG-TCAGAGATCAGGGTTCAGGAG-ACACTTT  1045

seq1  TGGCATACCTGGTTTCTGTCCGGGAAGAGACTGCCAAGAGTCTCAAGGAC  1095
      || |||| ||| ||||||  | | ||||||||| | ||||||||| | ||
seq2  TGCCATA-CTGCTTTCTGGTCAGCAAGAGACTGGC-AGAGTCTCAGGTAC  1093

seq1  ATTTTTTGGCTTT  1108
      |  ||||||||||
seq2  A--TTTTGGCTTT  1104