BAC Information

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BAC

Clone NameB6Ng01-346J10
Chromosome18 (Build37)
Map Location 84,435,691 - 84,532,194
singlet/doubletdoublet
Overlap geneZfp407
Upstream gene4921531P14Rik, LOC665284, Tshz1, Zadh2, LOC669856
Downstream geneCndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik, Cyb5, Fbxo15, 1700034H14Rik, LOC100039765
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346J10.bB6Ng01-346J10.g
ACCGA128443GA128444
length1,1991,181
definitionB6Ng01-346J10.b B6Ng01-346J10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,530,994 - 84,532,194)(84,435,691 - 84,436,879)
sequence
gaattccttggcaaatcataatcatatttgtaaaaagcaaatgctgaaaa
gtacaggaaatagaaaaagaagaaaatggtgcttaattaatgctatgaaa
gccaaactcctacagtggtcatcatggccactttaatctcacttgtaaag
aacagggttttctttctgcactggacacaagggacactccctaccctcct
tctctgggtgggtcaagctcaagcctgctggtgtgcttcctctcctccac
actacccctcagtcactgctcctcgtgttagagcactaggttctgctcct
tcagacatagctcaaaactacctcaatccataaaagcttttctacctatt
ttattctttgataccttcgtaacatctcttaaaactttctcacgaagttt
cttatagtatactggttgtgtgctaattagttctctgacttcagttttga
tcactgagtcataggctcctttggtgaacgaacaccaaagatttatgcgt
agcatgaattatttctagacaaagagtaagtcctagtgcatgctcttctg
tttcttgtttcaaatagcgacttgaagatttttatgaatgtgttcccagc
agccaggcattaaaagttggtcaaccaggcacgtgtgataaatataaata
agtgtcagaacgaattttgtcattttggctcaaattatgcatggcagtag
aataatatcatatattctaaaagtgcatatctttggctcagtatttgtaa
caatgatttaaactttttttttacataaatccagtattttcatagtcaag
ctgaagccaaatagtttgtatccaaactagagaatagtgccaccatagtg
tctgtcttgttgtctaggacctgaattctgcagtgagttaaagatgcttg
cacttctcagcgcttagcctgtgatacagttagaggaggtaatcctgcaa
aggtgagatagttggagtggttttacacacgctattcttttctgcctgct
ctcaagctgttcttgtgaaccctttgcaagaaaaatgccactttagatga
tagccatttctcagatcccaagagaatatataggatcttttttgttctag
tacttcctactggagcttgtttgactgtagagagtcaaggcaagccatgt
tagaggtgagggtgaaagaaatatagctcgctgatagccaggcacagct
gaattcctcacagtaactttggctgcagttccatgagtagcagcacaaca
tatgtggtcttgtttcttatatatctgtaatttcctaattagaataaatt
ttaaagttgaatttgtaagggcgtaaaaagaacgctcttacacttttatc
ttggactgtaatgtaggcattctagaatttacctatattccatccctgac
ccttgacaagatctcacaatacaacccaggctggccttgaatttgcaatc
ctcctgcctcagcttccagagtgttgggagtgcagacctggcatcacagc
tgccagcactttcatttgagaagtctctgagggttagctgtgcaatggct
gctttttcaccttgaagaccatgttgccagctttctaagattttgtcgta
ttaagccacaggtgaattatcaaaggcatagtatttaaaatgaaacaata
aaaataggaagaagaagaagagaatagagtgtgggtcatggtctccacta
gaaacagcaccagacagcatggtgacacagctgcacagcctgtgtcatgg
tcttgtcatttaaaacagcaatggcaaggcattaagaagcctgtagctga
ctgtgagcttctgtgattttcagtgtttgtctagctgtacactgtatttt
caacagtgcaacattttaaaggccagttcaagtagttttccaggggcttc
acctgactgggaacagagatggacagccccctgctccacgtttctcatcc
tctctttacccttcagcttcctgcttgttctcactggccacagggaagca
cagaacgccgcatgaggtagacatgtggaagtgaacggtttgatgagtct
gacatcataagtagacctgtggccactgctgccaccgatgcatccatggc
tactcttatcagagcactgttccaccttacagactgctcacctactggtt
cacctgggcagtgagctgttttagcttctggttacaataactattctggt
tacaatgttttagcttcttgtacatgaccattctggttacatgactacat
gacaaagaactactatgcaccactgactataatcttcatcagctcctccc
tgcttctcagtccattcttagaaggaactgtttgattcattgttgaatca
agtcacggtctgacaatcgaatgcctgtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_84530994_84532194
seq2: B6Ng01-346J10.b_42_1240 (reverse)

seq1  AGCTGTGCTTTGCCTATCAGGCAGGCTATA-TTCTCTCAACCTCACCTCT  49
      ||||||||  || |||||| ||  |||||| |||| ||| ||||||||||
seq2  AGCTGTGC-CTGGCTATCA-GCGAGCTATATTTCTTTCACCCTCACCTCT  48

seq1  AACAT-GCTTGCCCTGACTCTCTACAAGGTCAAAC-AGCTCCAAGTTAGA  97
      ||||| ||||||| ||||||||||||  ||||||| |||||| |||  ||
seq2  AACATGGCTTGCCTTGACTCTCTACA--GTCAAACAAGCTCC-AGTAGGA  95

seq1  AGTACTAGAAC-AAAAAGATCCTATATATCCTCCTTGGGATCTGAGAAAT  146
      ||||||||||| ||||||||||||||||| || |||||||||||||||||
seq2  AGTACTAGAACAAAAAAGATCCTATATATTCT-CTTGGGATCTGAGAAAT  144

seq1  GGCTATCATCCTAAAGTGGCATTTTTCTTGC-AAGGGTTCACAAGAACAG  195
      ||||||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  GGCTATCAT-CTAAAGTGGCATTTTTCTTGCAAAGGGTTCACAAGAACAG  193

seq1  CTTGAGAGCAGGCAG-AAAGAATAGCGTGTGTAAAACCACTCCAACTATT  244
      ||||||||||||||| |||||||||||||||||||||||||||||||| |
seq2  CTTGAGAGCAGGCAGAAAAGAATAGCGTGTGTAAAACCACTCCAACTA-T  242

seq1  CTCACCTTTGCAGGATTACCTCCTCTAACTGTATCACAGGCTAAGCGCTG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTTTGCAGGATTACCTCCTCTAACTGTATCACAGGCTAAGCGCTG  292

seq1  AGAAGTGCAAGCATCTTTAACTCACTGCAGAATTCAGGTCCTAGACAACA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGCAAGCATCTTTAACTCACTGCAGAATTCAGGTCCTAGACAACA  342

seq1  AGACAGACACTATGGTGGCACTATTCTCTAGTTTGGATACAAACTATTTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGACACTATGGTGGCACTATTCTCTAGTTTGGATACAAACTATTTG  392

seq1  GCTTCAGCTTGACTATGAAAATACTGGATTTATGTAAAAAAAAAGTTTAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGCTTGACTATGAAAATACTGGATTTATGTAAAAAAAAAGTTTAA  442

seq1  ATCATTGTTACAAATACTGAGCCAAAGATATGCACTTTTAGAATATATGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGTTACAAATACTGAGCCAAAGATATGCACTTTTAGAATATATGA  492

seq1  TATTATTCTACTGCCATGCATAATTTGAGCCAAAATGACAAAATTCGTTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTCTACTGCCATGCATAATTTGAGCCAAAATGACAAAATTCGTTC  542

seq1  TGACACTTATTTATATTTATCACACGTGCCTGGTTGACCAACTTTTAATG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTTATTTATATTTATCACACGTGCCTGGTTGACCAACTTTTAATG  592

seq1  CCTGGCTGCTGGGAACACATTCATAAAAATCTTCAAGTCGCTATTTGAAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTGCTGGGAACACATTCATAAAAATCTTCAAGTCGCTATTTGAAA  642

seq1  CAAGAAACAGAAGAGCATGCACTAGGACTTACTCTTTGTCTAGAAATAAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAACAGAAGAGCATGCACTAGGACTTACTCTTTGTCTAGAAATAAT  692

seq1  TCATGCTACGCATAAATCTTTGGTGTTCGTTCACCAAAGGAGCCTATGAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTACGCATAAATCTTTGGTGTTCGTTCACCAAAGGAGCCTATGAC  742

seq1  TCAGTGATCAAAACTGAAGTCAGAGAACTAATTAGCACACAACCAGTATA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGATCAAAACTGAAGTCAGAGAACTAATTAGCACACAACCAGTATA  792

seq1  CTATAAGAAACTTCGTGAGAAAGTTTTAAGAGATGTTACGAAGGTATCAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAGAAACTTCGTGAGAAAGTTTTAAGAGATGTTACGAAGGTATCAA  842

seq1  AGAATAAAATAGGTAGAAAAGCTTTTATGGATTGAGGTAGTTTTGAGCTA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAAATAGGTAGAAAAGCTTTTATGGATTGAGGTAGTTTTGAGCTA  892

seq1  TGTCTGAAGGAGCAGAACCTAGTGCTCTAACACGAGGAGCAGTGACTGAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAAGGAGCAGAACCTAGTGCTCTAACACGAGGAGCAGTGACTGAG  942

seq1  GGGTAGTGTGGAGGAGAGGAAGCACACCAGCAGGCTTGAGCTTGACCCAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGTGTGGAGGAGAGGAAGCACACCAGCAGGCTTGAGCTTGACCCAC  992

seq1  CCAGAGAAGGAGGGTAGGGAGTGTCCCTTGTGTCCAGTGCAGAAAGAAAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAAGGAGGGTAGGGAGTGTCCCTTGTGTCCAGTGCAGAAAGAAAA  1042

seq1  CCCTGTTCTTTACAAGTGAGATTAAAGTGGCCATGATGACCACTGTAGGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTCTTTACAAGTGAGATTAAAGTGGCCATGATGACCACTGTAGGA  1092

seq1  GTTTGGCTTTCATAGCATTAATTAAGCACCATTTTCTTCTTTTTCTATTT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCTTTCATAGCATTAATTAAGCACCATTTTCTTCTTTTTCTATTT  1142

seq1  CCTGTACTTTTCAGCATTTGCTTTTTACAAATATGATTATGATTTGCCAA  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACTTTTCAGCATTTGCTTTTTACAAATATGATTATGATTTGCCAA  1192

seq1  GGAATTC  1201
      |||||||
seq2  GGAATTC  1199

seq1: chr18_84435691_84436879
seq2: B6Ng01-346J10.g_64_1244

seq1  GAATTCCTCACAGTAACTTTGGCTGCAGTTCCATGAGTAGCAGCACAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCACAGTAACTTTGGCTGCAGTTCCATGAGTAGCAGCACAACA  50

seq1  TATGTGGTCTTGTTTCTTATATATCTGTAATTTCCTAATTAGAATAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGTCTTGTTTCTTATATATCTGTAATTTCCTAATTAGAATAAATT  100

seq1  TTAAAGTTGAATTTGTAAGGGCGTAAAAAGAACGCTCTTACACTTTTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTTGAATTTGTAAGGGCGTAAAAAGAACGCTCTTACACTTTTATC  150

seq1  TTGGACTGTAATGTAGGCATTCTAGAATTTACCTATATTCCATCCCTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACTGTAATGTAGGCATTCTAGAATTTACCTATATTCCATCCCTGAC  200

seq1  CCTTGACAAGATCTCACAATACAACCCAGGCTGGCCTTGAATTTGCAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGACAAGATCTCACAATACAACCCAGGCTGGCCTTGAATTTGCAATC  250

seq1  CTCCTGCCTCAGCTTCCAGAGTGTTGGGAGTGCAGACCTGGCATCACAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCCTCAGCTTCCAGAGTGTTGGGAGTGCAGACCTGGCATCACAGC  300

seq1  TGCCAGCACTTTCATTTGAGAAGTCTCTGAGGGTTAGCTGTGCAATGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCACTTTCATTTGAGAAGTCTCTGAGGGTTAGCTGTGCAATGGCT  350

seq1  GCTTTTTCACCTTGAAGACCATGTTGCCAGCTTTCTAAGATTTTGTCGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTCACCTTGAAGACCATGTTGCCAGCTTTCTAAGATTTTGTCGTA  400

seq1  TTAAGCCACAGGTGAATTATCAAAGGCATAGTATTTAAAATGAAACAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCCACAGGTGAATTATCAAAGGCATAGTATTTAAAATGAAACAATA  450

seq1  AAAATAGGAAGAAGAAGAAGAGAATAGAGTGTGGGTCATGGTCTCCACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGGAAGAAGAAGAAGAGAATAGAGTGTGGGTCATGGTCTCCACTA  500

seq1  GAAACAGCACCAGACAGCATGGTGACACAGCTGCACAGCCTGTGTCATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGCACCAGACAGCATGGTGACACAGCTGCACAGCCTGTGTCATGG  550

seq1  TCTTGTCATTTAAAACAGCAATGGCAAGGCATTAAGAAGCCTGTAGCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCATTTAAAACAGCAATGGCAAGGCATTAAGAAGCCTGTAGCTGA  600

seq1  CTGTGAGCTTCTGTGATTTTCAGTGTTTGTCTAGCTGTACACTGTATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGCTTCTGTGATTTTCAGTGTTTGTCTAGCTGTACACTGTATTTT  650

seq1  CAACAGTGCAACATTTTAAAGGCCAGTTCAAGTAGTTTTCCAGGGGCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTGCAACATTTTAAAGGCCAGTTCAAGTAGTTTTCCAGGGGCTTC  700

seq1  ACCTGACTGGGAACAGAGATGGACAGCCCCCTGCTCCACGTTTCTCATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGACTGGGAACAGAGATGGACAGCCCCCTGCTCCACGTTTCTCATCC  750

seq1  TCTCTTTACCCTTCAGCTTCCTGCTTGTTCTCACTGGCCACAGGGAAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTACCCTTCAGCTTCCTGCTTGTTCTCACTGGCCACAGGGAAGCA  800

seq1  CAGAACGCCGCATGAGGTAGACATGTGGAAGTGAACGGTTTGATGAGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACGCCGCATGAGGTAGACATGTGGAAGTGAACGGTTTGATGAGTCT  850

seq1  GACATCATAAGTAGACCTGTGGCCACTGCTGCCACCGATGCATCCATGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCATAAGTAGACCTGTGGCCACTGCTGCCACCGATGCATCCATGGC  900

seq1  TACTCTTATCAGAGCACTGTTCCACCTTACAGACTGCTCACCTACTGGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTATCAGAGCACTGTTCCACCTTACAGACTGCTCACCTACTGGTT  950

seq1  CACCTGGGCAGTGAGCTGTTTTTAGCTTCTGGTTACAATAACTATTCTGG  1000
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CACCTGGGCAGTGAGCTG-TTTTAGCTTCTGGTTACAATAACTATTCTGG  999

seq1  TTACAATGTTTTTAGCTTCTTGTTACAATGACCATTCTGGTTACAATGAC  1050
      |||||||| ||||||||||||| ||| ||||||||||||||||| |||||
seq2  TTACAATG-TTTTAGCTTCTTG-TAC-ATGACCATTCTGGTTAC-ATGAC  1045

seq1  TACAATGACAAAGAACTACTATGCA-CACTGACTATAAATCTTCCATCAG  1099
      ||| ||||||||||||||||||||| |||||||||| |||||| ||||||
seq2  TAC-ATGACAAAGAACTACTATGCACCACTGACTAT-AATCTT-CATCAG  1092

seq1  CT-CTCCCTGC-TCTCAGGTCAATTCTTAG-AGGAACTG-TTGATTCATA  1145
      || |||||||| ||||| ||| |||||||| |||||||| ||||||||| 
seq2  CTCCTCCCTGCTTCTCA-GTCCATTCTTAGAAGGAACTGTTTGATTCAT-  1140

seq1  TGTTGAATACAAGTTCACTGTCTGACAATTCGATAGCCTGTTTT  1189
      |||||||| |||| |||| ||||||||| ||||  |||||||||
seq2  TGTTGAAT-CAAG-TCACGGTCTGACAA-TCGAATGCCTGTTTT  1181