BAC Information

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BAC

Clone NameB6Ng01-346P20
Chromosome18 (Build37)
Map Location 31,169,732 - 31,170,903
singlet/doubletsinglet
Overlap geneRit2
Upstream genePik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168
Downstream geneEG666130, Syt4, LOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346P20.bB6Ng01-346P20.g
ACCGA128729GA128730
length1,2181,168
definitionB6Ng01-346P20.b B6Ng01-346P20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcctaaacataatcaaagtagtatagaacaaaccagtagcc
aacatcaaactaagtggagagaaacttgaagcaatcccactaaaattagg
gactagacaatgttacctactctctctctacccattcaatataatactcg
aagttctagccagagcaattagacaacaaaaggaggttaaagggatacaa
attggaagggaaggagtcaaaatatcagtatttgcagatgatataattgt
atacataagtgacccccaaaattccaccagacaactaaatctgataaaca
acttcagcaaagtggctggatataaaattaactcaaacaaatcagtgtcc
ttcctctactcaaaggataaacaggctgagaaagaaattagggaaacaac
acccttcataacagtcacaaataatataaaacaccttagtgtgactctaa
gcaagtgaaagatctatatgacaagaactttaagtctctgaagaaagaag
ttgaagaagatctcagaagatggaaagatctcccatgctcatggattggc
agcattaatgtagtaaaaatggccatcttgccaaaagcaatctacagatt
caatccaatccccatcaaaattccaactcaattctttatagagttagaaa
gggcaattctcaaatttatctggcatatcctaagacttaggatagcaaaa
gctattcttaacaataaacgaacctctggtggaataaccatccctgacct
caagctgtactacagagcaattgtgataaaaactggtactggtatagtga
cagacaggtagatcaatggaacagaattgaagacccagaaatgaacccac
acacctatggtcatttaatctttgacaaagaagctaaaactattcagtat
aaaaagacagcgttttttcttacgcgcgtttcgcaaccgggccaggaaag
acgcaacaagccagaatctttcttgcggcaaagctttgaattgctttact
caggagccagagagggaagagcgcggcagatagaggtcagatgaggtaag
agagagaagagattgcaagagatgcagaagagaagaggccagaaaagagg
gccagagaggggagagaggcagaaagctgaggaaagacgactagtagtaa
tgaaggaccgaggatggaggtgccgaacctccgttcccttaaagagaata
ttatctttcggcctcgag
gaattctcaaaaagctaacaataaatatgacccagctacaccacaccttg
gcacacacaaaagggctcagcatcctatcccacagatacatgctggaaca
tgtccattgcttctctgttcacaacagttgaaaatgaaaacagcctgaat
gacctacaaccaataaatagataatgaaaatgaggtacaggaaatttgtt
actcttgtctggcttccacacataccaggtactcatatgattcacaacat
acatgcaaactaaaaacctagacatacaaaatttaaaaataacttgaaga
ataattgcttggcatatatattagtcagagttttctagagaaaagattgc
tagaatgtgtctgtgtctgagtaggtaggtaggtaggtcttcactaaatg
ttggaatcctaaagatcctctaccaccactgaaggcatgattcagcagag
gacatatgaatttgtcagtgagaaataagggcaagcaggcaaaaccaaga
gcttttttctcccatgccctttacacaggagaacgcttagcacaaattta
gtgtgagtccttaaacctcaaatggtagaaagttgaatctttctacctca
aatgaaaggtatttagggtgatcactctcatgtcaaacaaccctattaag
aaaaattgttcacagttgtgctgggacacttgagtttttagttaattcca
gattttgttaagttgatatcccaaaacagacatcatattatacatggtcc
aaccatgttgacaatctctcccaaacattttcctgttttccactaactgg
tgccaatatttaaaggtccctcgcttcttttggtattgaggtaattaatc
cagtttttcttcttttatcaagtcttgacttttactaacacaaacttaag
attttcttgataacaagaacccagagaaagtttgataagtgaatgtatat
aaagaaaatatctaataaaaaaatttaaacaaatagagttgtcatgtata
gaatcagagtcagttcagtaaacagaaaataaaaaatgtagaagcattag
tgaagaggtccagctggcagagttactaaatatcatcttattatgcagat
gactgggcagtaccagggagaactggcttggatcatcgtgagcttggatg
gtcatactttctggtaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_31169732_31170903
seq2: B6Ng01-346P20.g_64_1231

seq1  GAATTCTCAAAAAGCTAACAATAAATATGACCCAGCTACACCACACCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAAAAGCTAACAATAAATATGACCCAGCTACACCACACCTTG  50

seq1  GCACACACAAAAGGGCTCAGCATCCTATCCCACAGATACATGCTGGAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACAAAAGGGCTCAGCATCCTATCCCACAGATACATGCTGGAACA  100

seq1  TGTCCATTGCTTCTCTGTTCACAACAGTTGAAAATGAAAACAGCCTGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATTGCTTCTCTGTTCACAACAGTTGAAAATGAAAACAGCCTGAAT  150

seq1  GACCTACAACCAATAAATAGATAATGAAAATGAGGTACAGGAAATTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTACAACCAATAAATAGATAATGAAAATGAGGTACAGGAAATTTGTT  200

seq1  ACTCTTGTCTGGCTTCCACACATACCAGGTACTCATATGATTCACAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGTCTGGCTTCCACACATACCAGGTACTCATATGATTCACAACAT  250

seq1  ACATGCAAACTAAAAACCTAGACATACAAAATTTAAAAATAACTTGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCAAACTAAAAACCTAGACATACAAAATTTAAAAATAACTTGAAGA  300

seq1  ATAATTGCTTGGCATATATATTAGTCAGAGTTTTCTAGAGAAAAGATTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGCTTGGCATATATATTAGTCAGAGTTTTCTAGAGAAAAGATTGC  350

seq1  TAGAATGTGTCTGTGTCTGAGTAGGTAGGTAGGTAGGTCTTCACTAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGTGTCTGTGTCTGAGTAGGTAGGTAGGTAGGTCTTCACTAAATG  400

seq1  TTGGAATCCTAAAGATCCTCTACCACCACTGAAGGCATGATTCAGCAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATCCTAAAGATCCTCTACCACCACTGAAGGCATGATTCAGCAGAG  450

seq1  GACATATGAATTTGTCAGTGAGAAATAAGGGCAAGCAGGCAAAACCAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATGAATTTGTCAGTGAGAAATAAGGGCAAGCAGGCAAAACCAAGA  500

seq1  GCTTTTTTCTCCCATGCCCTTTACACAGGAGAACGCTTAGCACAAATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTTCTCCCATGCCCTTTACACAGGAGAACGCTTAGCACAAATTTA  550

seq1  GTGTGAGTCCTTAAACCTCAAATGGTAGAAAGTTGAATCTTTCTACCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGTCCTTAAACCTCAAATGGTAGAAAGTTGAATCTTTCTACCTCA  600

seq1  AATGAAAGGTATTTAGGGTGATCACTCTCATGTCAAACAACCCTATTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGGTATTTAGGGTGATCACTCTCATGTCAAACAACCCTATTAAG  650

seq1  AAAAATTGTTCACAGTTGTGCTGGGACACTTGAGTTTTTAGTTAATTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTGTTCACAGTTGTGCTGGGACACTTGAGTTTTTAGTTAATTCCA  700

seq1  GATTTTGTTAAGTTGATATCCCAAAACAGACATCATATTATACATGGTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGTTAAGTTGATATCCCAAAACAGACATCATATTATACATGGTCC  750

seq1  AACCATGTTGACAATCTCTCCCAAACATTTTCCTGTTTTCCACTAACTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGTTGACAATCTCTCCCAAACATTTTCCTGTTTTCCACTAACTGG  800

seq1  TGCCAATATTTAAAGGTCCCTCGCTTCTTTTGGTATTGAGGTAATTAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAATATTTAAAGGTCCCTCGCTTCTTTTGGTATTGAGGTAATTAATC  850

seq1  CAGTTTTTCTTCTTTTATCAAGTCTTGACTTTTACTAACACAAACTTAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTTCTTCTTTTATCAAGTCTTGACTTTTACTAACACAAACTTAAG  900

seq1  ATTTTCTTGATAACAAGAACCCAGAGAAAGTTTGATAAGTGAATGTATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTGATAACAAGAACCCAGAGAAAGTTTGATAAGTGAATGTATAT  950

seq1  AAAGAAAATATCTAAT-AAAAAATTAAAACAAAATAGAGTTGTCATGTAT  999
      |||||||||||||||| |||||||| |||| |||||||||||||||||||
seq2  AAAGAAAATATCTAATAAAAAAATTTAAAC-AAATAGAGTTGTCATGTAT  999

seq1  AGAATTCAGAGTCAGTTCAGTAAACAGAAA--TAAAAATGTAGAAAGCAT  1047
      |||| |||||||||||||||||||||||||   |||||||||| ||||||
seq2  AGAA-TCAGAGTCAGTTCAGTAAACAGAAAATAAAAAATGTAG-AAGCAT  1047

seq1  TAGTGAAGAAGTCCAGCCTGGCAGAGTAACTTAAATATCATCT--ATATG  1095
      ||||||||| |||||| |||||||||| || ||||||||||||   ||||
seq2  TAGTGAAGAGGTCCAG-CTGGCAGAGTTAC-TAAATATCATCTTATTATG  1095

seq1  CAAGATGACTGGGCAGTACCCAGGAGAACTGCCTCTGATCATCCCGTGAG  1145
      | ||||||||||||||||||  ||||||||| ||  ||||||  ||||||
seq2  C-AGATGACTGGGCAGTACCAGGGAGAACTGGCTTGGATCAT--CGTGAG  1142

seq1  CTTGAGTGGTCAATTACTTTCT-GTAGA  1172
      ||||  ||||||  |||||||| |||||
seq2  CTTGGATGGTCA--TACTTTCTGGTAGA  1168