BAC Information

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BAC

Clone NameB6Ng01-347F05
Chromosome18 (Build37)
Map Location 17,406,116 - 17,532,041
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665509, Cdh2, LOC665519, 1700001G01Rik, 4921533I20Rik
Downstream geneLOC100040647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347F05.bB6Ng01-347F05.g
ACCGA128962GA128963
length1,198614
definitionB6Ng01-347F05.b B6Ng01-347F05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,406,116 - 17,406,975)(17,531,428 - 17,532,041)
sequence
gaattcatataatccttaggcaaatggatgtatcttgaggctatcatcca
aagtgagttaaccaaataacaaaagaatacacatgatatgcagtcactga
tgaatggatattagcccagaagctcagaatacccaagatacaatttgcaa
aacacatgaaactcaagaaaaaggaagaccaaagtgtgggcacttagatc
cattttagaagagggaacaaaatacccatggaaggagttacagagacaaa
gtttggagtaaggactgaaggcatgaccatccagaaagtgtcccacctgg
ggaaccatcccataaacaaccaccaaacccagacactattgcagatgcca
acaagagtttgttgacaggagcttgatatagttgtctcttgagaggctct
gccagttcctaatacagaagtggatgctcacaggaatctattagatggag
cacagggtccccaatgaaggagctagagacagtacccaaggagctgaagg
ggtttgcagccccctaggaggaacaataatatgaattaaccagtaacccc
agagctccctgggactaaaccaccaatcaaagaacacacagagaacctca
aggctctagctgcatatgtagcagagggtggcctagtcagtcatcaaagg
gaggagaagcccttggttctgtgaaggttctatgccccagtataggggaa
tgccagggccaggaagcaggattgggtgggccgaggagcagggggaaggg
ggagaggataggggactttcagaagggaaaccaggaaaggggataacatt
tgaaatgtaaataaagaaaatatctaattaaaaaataaataaaaatgatt
ctataagtaacataatgaccactactatgtattctcttaaacttatatag
tgtaaaatgaagtgatcattcatagcctgacctggtttatacataggaca
attgaattaaacctaagttatatccatgtcacatgtccctaagcagagta
ctgaagcatagctggtattcactgactttcattaattaaatgtttttcat
tttttcttcttttcttaggatccaggagtcaatagaacatattcaaggtg
ggagtctgcattaatggatgagacgttggcagatgaacacaaggtggagc
atcaaggctttcatggaggaacagacaggcttattgtgtgagaagtaa

gaattcttgggttccttctagagagaaataaaagaataagtattctgaga
aacacagaaaactcattcacctttgtatgtaatatggaataaaatatatg
gctgagtattttcagctatctctttaattatgtggataaaaattgaaaga
ttttaaagacaattcaatttctttatgcagctaaccaagcttgatagcct
tctattcatattacaaatagaaagataacaattttccagaaaataatttt
ataattggattccattataaagactttcaaagtaccctaatattagccag
gcatatatatatatgtatatatatatccagcattgaattagatcagccac
atgacaagaatatttgataaggtagaaagttctttggtttgatcataagc
ctttaggccaatgtgatcaggtcatgtattaaggaactccaacatggttt
accattgttattttattgagccttagttttcttcctagtgaaacatctga
cctatatgaaactctattgaaagactgaataaactttccctctccctctc
ccccctccccctacccctccctctccctctccctttcctcctctccctct
cattccgctcctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_17406116_17406975
seq2: B6Ng01-347F05.b_389_1246

seq1  GCAGATGCCAACAAGAGTTTGTTGACAGGAGCTTGATATAGTTGTCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGCCAACAAGAGTTTGTTGACAGGAGCTTGATATAGTTGTCTCTT  50

seq1  GAGAGGCTCTGCCAGTTCCTAATACAGAAGTGGATGCTCACAGGAATCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCTCTGCCAGTTCCTAATACAGAAGTGGATGCTCACAGGAATCTA  100

seq1  TTAGATGGAGCACAGGGTCCCCAATGAAGGAGCTAGAGACAGTACCCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGGAGCACAGGGTCCCCAATGAAGGAGCTAGAGACAGTACCCAAG  150

seq1  GAGCTGAAGGGGTTTGCAGCCCCCTAGGAGGAACAATAATATGAATTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGAAGGGGTTTGCAGCCCCCTAGGAGGAACAATAATATGAATTAAC  200

seq1  CAGTAACCCCAGAGCTCCCTGGGACTAAACCACCAATCAAAGAACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAACCCCAGAGCTCCCTGGGACTAAACCACCAATCAAAGAACACACA  250

seq1  GAGAACCTCAAGGCTCTAGCTGCATATGTAGCAGAGGGTGGCCTAGTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCTCAAGGCTCTAGCTGCATATGTAGCAGAGGGTGGCCTAGTCAG  300

seq1  TCATCAAAGGGAGGAGAAGCCCTTGGTTCTGTGAAGGTTCTATGCCCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAAAGGGAGGAGAAGCCCTTGGTTCTGTGAAGGTTCTATGCCCCAG  350

seq1  TATAGGGGAATGCCAGGGCCAGGAAGCAGGATTGGGTGGGCCGAGGAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGGGAATGCCAGGGCCAGGAAGCAGGATTGGGTGGGCCGAGGAGCA  400

seq1  GGGGGAAGGGGGAGAGGATAGGGGACTTTCAGAAGGGAAACCAGGAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAGGGGGAGAGGATAGGGGACTTTCAGAAGGGAAACCAGGAAAGG  450

seq1  GGATAACATTTGAAATGTAAATAAAGAAAATATCTAATTAAAAAATAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAACATTTGAAATGTAAATAAAGAAAATATCTAATTAAAAAATAAAT  500

seq1  AAAAATGATTCTATAAGTAACATAATGACCACTACTATGTATTCTCTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGATTCTATAAGTAACATAATGACCACTACTATGTATTCTCTTAA  550

seq1  ACTTATATAGTGTAAAATGAAGTGATCATTCATAGCCTGACCTGGTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATATAGTGTAAAATGAAGTGATCATTCATAGCCTGACCTGGTTTAT  600

seq1  ACATAGGACAATTGAATTAAACCTAAGTTATATCCATGTCACATGTCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGGACAATTGAATTAAACCTAAGTTATATCCATGTCACATGTCCCT  650

seq1  AAGCAGAGTACTGAAGCATAGGCTGGTATTCACTGACTTTTCATTAATTA  700
      |||||||||||||||||||| |||||||||||||||| ||||||||||||
seq2  AAGCAGAGTACTGAAGCATA-GCTGGTATTCACTGAC-TTTCATTAATTA  698

seq1  AATGTTTTTCATTTTTTCCTTCTTTTCTTAGGATCCAGGAAGTCAATAG-  749
      ||||||||||||||||| ||||||||||||||||||||| ||||||||| 
seq2  AATGTTTTTCATTTTTT-CTTCTTTTCTTAGGATCCAGG-AGTCAATAGA  746

seq1  ACATA-TCAAGGTGGGAGTCTGCATTAATGGATGAAGACGTTGCCAGATG  798
      ||||| |||||||||||||||||||||||||||| |||||||| ||||||
seq2  ACATATTCAAGGTGGGAGTCTGCATTAATGGATG-AGACGTTGGCAGATG  795

seq1  AACACAAG--TGAGCATCAAGCCTTTCATGGAGGACCAAGGACAGGCT--  844
      ||||||||   |||||||||| ||||||||||||| ||  ||||||||  
seq2  AACACAAGGTGGAGCATCAAGGCTTTCATGGAGGAACA--GACAGGCTTA  843

seq1  ATGTGTGAGGAAGTAA  860
       ||||||| |||||||
seq2  TTGTGTGA-GAAGTAA  858


seq1: chr18_17531428_17532041
seq2: B6Ng01-347F05.g_66_679 (reverse)

seq1  GGAGGAGGGGGAGTGAGAGGGAGAGGAGGAAAGGGAGAGGGAGAGGGAGG  50
      |||||| | ||| |||||||||||||||||||||||||||||||||||||
seq2  GGAGGA-GCGGAATGAGAGGGAGAGGAGGAAAGGGAGAGGGAGAGGGAGG  49

seq1  GG-AGGGGGAGGGGGGAGAGGGAGAGGGAAAGTTTATTCAGTCTTTCAAT  99
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGGGAGGGGGGAGAGGGAGAGGGAAAGTTTATTCAGTCTTTCAAT  99

seq1  AGAGTTTCATATAGGTCAGATGTTTCACTAGGAAGAAAACTAAGGCTCAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTCATATAGGTCAGATGTTTCACTAGGAAGAAAACTAAGGCTCAA  149

seq1  TAAAATAACAATGGTAAACCATGTTGGAGTTCCTTAATACATGACCTGAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAACAATGGTAAACCATGTTGGAGTTCCTTAATACATGACCTGAT  199

seq1  CACATTGGCCTAAAGGCTTATGATCAAACCAAAGAACTTTCTACCTTATC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGGCCTAAAGGCTTATGATCAAACCAAAGAACTTTCTACCTTATC  249

seq1  AAATATTCTTGTCATGTGGCTGATCTAATTCAATGCTGGATATATATATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTCTTGTCATGTGGCTGATCTAATTCAATGCTGGATATATATATA  299

seq1  CATATATATATATGCCTGGCTAATATTAGGGTACTTTGAAAGTCTTTATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATATATATGCCTGGCTAATATTAGGGTACTTTGAAAGTCTTTATA  349

seq1  ATGGAATCCAATTATAAAATTATTTTCTGGAAAATTGTTATCTTTCTATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATCCAATTATAAAATTATTTTCTGGAAAATTGTTATCTTTCTATT  399

seq1  TGTAATATGAATAGAAGGCTATCAAGCTTGGTTAGCTGCATAAAGAAATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATATGAATAGAAGGCTATCAAGCTTGGTTAGCTGCATAAAGAAATT  449

seq1  GAATTGTCTTTAAAATCTTTCAATTTTTATCCACATAATTAAAGAGATAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGTCTTTAAAATCTTTCAATTTTTATCCACATAATTAAAGAGATAG  499

seq1  CTGAAAATACTCAGCCATATATTTTATTCCATATTACATACAAAGGTGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAATACTCAGCCATATATTTTATTCCATATTACATACAAAGGTGAA  549

seq1  TGAGTTTTCTGTGTTTCTCAGAATACTTATTCTTTTATTTCTCTCTAGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTTCTGTGTTTCTCAGAATACTTATTCTTTTATTTCTCTCTAGAA  599

seq1  GGAACCCAAGAATTC  614
      |||||||||||||||
seq2  GGAACCCAAGAATTC  614


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