BAC Information

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BAC

Clone NameB6Ng01-347J01
Chromosome18 (Build37)
Map Location 52,753,769 - 52,905,235
singlet/doubletdoublet
Overlap geneZfp474, 1700034E13Rik, Gykl1
Upstream geneEG240289, Ftmt, Srfbp1, Lox
Downstream geneSncaip, A730036E13Rik, LOC667317, LOC100042430, Snx2, Gm1859, Snx24, Ppic, Prdm6, Ccdc100
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347J01.bB6Ng01-347J01.g
ACCGA129131GA129132
length1,188450
definitionB6Ng01-347J01.b B6Ng01-347J01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,753,769 - 52,754,977)(52,904,780 - 52,905,235)
sequence
gaattctacactatgtgtggttgttttctagttatgtgtactttgtttta
ataagaaggatttaaagaggtgcaacaattgttgactcagtatgtttgta
cagttaacagttttcgatggataatcaaattcttttgtgttgtggaatgg
cgctgcaaacttatattctgacctagagttttctgccttgcccatttccc
tagttttatcagtactgacatttagatttttgctcacatgacaccatcta
aacagtaaaggttcaatacattgcccttatgtattattcaggcttgttca
agaatgtgcttctgtgttttatgccttgagacattgatcagcttttgagg
taaccattggttatattctctgttgatggtgcatgtaccattatatgttt
agatttatatagtccctcattaaaatcccttttatttatcttttttactt
atttgaaacctagacttgagagagcttttttaaatctcatgcaatataat
aatagaaatattttttgtagttttaatgtcatttgacattttatactttg
aaggtatgttactaaatgcatgtttgtgacatgaccatctacttggtcgc
atacttcatcaataagacagttatatctgttttattagatgctagttttg
tttctagttgctctcatgttcatattgctatgtttactttaaaaacttaa
taatcaatcatttttaaattacagttctttattttcacctgaaaaaattc
accactaaccataataatagtcatattaactaaccataatcaatagtcct
tggttggctaatagatgatcaagtttattatatacatttcctttccaaca
aaagtcatctcacttcaatagacaacagtatgttagtgacttgttcaact
acatatttccagaattagataataaaaattaggctattttagtagccagg
gatttgcaaagaagatattatgttgtaactacttttcatgccatacacat
attttaggaaaatattcagagatctctgcaagagatctcacagaattctt
ttttgagtgtaagtttcatcgtgcttctttggctagatatgaaaccttgg
cattctgagaattatcagtgagacggaatagatattactaaatcttcctt
ttggaatactacaaatcttctctacattggtcataagc

tttagtctcctgtgtaactttgctatttttttttaacgtctttcaattgt
atgtggacatctagggaagcgtaattataggaggaaatgtgattacccag
aaaaagagttaccacactgatctctgagaacaattgtcaagatctcaggc
ctgagtgattactccaatatgaataattcataattggaaattagtgcttt
aatactttactcaacaatactcaaacattaaaattctcatatgttgaaat
aattataacaacatctactcagagaaacgcaatgtccccatgtttccaca
ttaagtattattcaaggagaaaaattctgatctcatggggtgatgtatgt
cacaggctagtttattcaggtgagagaactggaccttcacaagaaggatg
attgtgatggtgttggacatgactacaccagcttattagccatggtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_52753769_52754977
seq2: B6Ng01-347J01.b_44_1231

seq1  GAATTCTACACTATGTGTGGTTGTTTTCTAGTTATGTGTACTTTGTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACACTATGTGTGGTTGTTTTCTAGTTATGTGTACTTTGTTTTA  50

seq1  ATAAGAAGGATTTAAAGAGGTGCAACAATTGTTGACTCAGTATGTTTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAGGATTTAAAGAGGTGCAACAATTGTTGACTCAGTATGTTTGTA  100

seq1  CAGTTAACAGTTTTCGATGGATAATCAAATTCTTTTGTGTTGTGGAATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAACAGTTTTCGATGGATAATCAAATTCTTTTGTGTTGTGGAATGG  150

seq1  CGCTGCAAACTTATATTCTGACCTAGAGTTTTCTGCCTTGCCCATTTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCAAACTTATATTCTGACCTAGAGTTTTCTGCCTTGCCCATTTCCC  200

seq1  TAGTTTTATCAGTACTGACATTTAGATTTTTGCTCACATGACACCATCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTATCAGTACTGACATTTAGATTTTTGCTCACATGACACCATCTA  250

seq1  AACAGTAAAGGTTCAATACATTGCCCTTATGTATTATTCAGGCTTGTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTAAAGGTTCAATACATTGCCCTTATGTATTATTCAGGCTTGTTCA  300

seq1  AGAATGTGCTTCTGTGTTTTATGCCTTGAGACATTGATCAGCTTTTGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTGCTTCTGTGTTTTATGCCTTGAGACATTGATCAGCTTTTGAGG  350

seq1  TAACCATTGGTTATATTCTCTGTTGATGGTGCATGTACCATTATATGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATTGGTTATATTCTCTGTTGATGGTGCATGTACCATTATATGTTT  400

seq1  AGATTTATATAGTCCCTCATTAAAATCCCTTTTATTTATCTTTTTTACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTATATAGTCCCTCATTAAAATCCCTTTTATTTATCTTTTTTACTT  450

seq1  ATTTGAAACCTAGACTTGAGAGAGCTTTTTTAAATCTCATGCAATATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAACCTAGACTTGAGAGAGCTTTTTTAAATCTCATGCAATATAAT  500

seq1  AATAGAAATATTTTTTGTAGTTTTAATGTCATTTGACATTTTATACTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAATATTTTTTGTAGTTTTAATGTCATTTGACATTTTATACTTTG  550

seq1  AAGGTATGTTACTAAATGCATGTTTGTGACATGACCATCTACTTGGTCGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATGTTACTAAATGCATGTTTGTGACATGACCATCTACTTGGTCGC  600

seq1  ATACTTCATCAATAAGACAGTTATATCTGTTTTATTAGATGCTAGTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTCATCAATAAGACAGTTATATCTGTTTTATTAGATGCTAGTTTTG  650

seq1  TTTCTAGTTGCTCTCATGTTCATATTGCTATGTTTACTTTAAAAACTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGTTGCTCTCATGTTCATATTGCTATGTTTACTTTAAAAACTTAA  700

seq1  TAATCAATCATTTTTAAATTACAGTTCTTTATTTTCACCTGAAAAAATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAATCATTTTTAAATTACAGTTCTTTATTTTCACCTGAAAAAATTC  750

seq1  ACCACTAACCATAATAATAGTCATATTAACTAACCATAATCAATAGTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTAACCATAATAATAGTCATATTAACTAACCATAATCAATAGTCCT  800

seq1  TGGTTGGCTAATAGATGATCAAGTTTATTATATACATTTCCTTTCCAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGCTAATAGATGATCAAGTTTATTATATACATTTCCTTTCCAACA  850

seq1  AAAGTCATCTCACTTCAATAGACAACAGTATGTTAGTGACTTGTTCAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCATCTCACTTCAATAGACAACAGTATGTTAGTGACTTGTTCAACT  900

seq1  ACATATTTCCAGAATTAGATAATAAAAATTAGGCTATTTTAGTAGCCAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTCCAGAATTAGATAATAAAAATTAGGCTATTTTAGTAGCCAGG  950

seq1  GATTTGCAAAGAAGATATTTATGTTTGTAACTACTTTTCATGCCATACAC  1000
      ||||||||||||||||| ||||| ||||||||||||||||||||||||||
seq2  GATTTGCAAAGAAGATA-TTATG-TTGTAACTACTTTTCATGCCATACAC  998

seq1  AATAATTTTAGGAAAATATTCAAGAGATCTCTGCAAAGAGATCTCACAGA  1050
      |   ||||||||||||||||| |||||||||||| |||||||||||||||
seq2  A--TATTTTAGGAAAATATTC-AGAGATCTCTGC-AAGAGATCTCACAGA  1044

seq1  ATTCTTTTTTGAAGTGTAAAGTTTTCATCGTTGCTCCTTTGGCTTAGGAT  1100
      ||||||||||| |||||||   |||||||| |||| ||||||||   |||
seq2  ATTCTTTTTTG-AGTGTAA--GTTTCATCG-TGCTTCTTTGGCT--AGAT  1088

seq1  ATTGAAAACCCTTGGCAATCTGAGAATTTATCAGTGAGACGG-ATAG-TA  1148
      | |||||  |||||||| |||||||| ||||||||||||||| |||| ||
seq2  A-TGAAA--CCTTGGCATTCTGAGAA-TTATCAGTGAGACGGAATAGATA  1134

seq1  -TACTAAATACTTCTCTTTTTTGAATACTACATATTCTTCTTCTTTACAA  1197
       |||||||| ||  || |||| |||||||||| |    |||||| ||| |
seq2  TTACTAAAT-CT--TCCTTTTGGAATACTACAAA----TCTTCTCTAC-A  1176

seq1  TTGTTCATAAGC  1209
      ||| ||||||||
seq2  TTGGTCATAAGC  1188


seq1: chr18_52904780_52905235
seq2: B6Ng01-347J01.g_68_523 (reverse)

seq1  ACACACCATGGCTAATAAGCTGGTGTAGTCATGTCCAACACCATCACAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCATGGCTAATAAGCTGGTGTAGTCATGTCCAACACCATCACAAT  50

seq1  CATCCTTCTTGTGAAGGTCCAGTTCTCTCACCTGAATAAACTAGCCTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTCTTGTGAAGGTCCAGTTCTCTCACCTGAATAAACTAGCCTGTG  100

seq1  ACATACATCACCCCATGAGATCAGAATTTTTCTCCTTGAATAATACTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATCACCCCATGAGATCAGAATTTTTCTCCTTGAATAATACTTAA  150

seq1  TGTGGAAACATGGGGACATTGCGTTTCTCTGAGTAGATGTTGTTATAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAACATGGGGACATTGCGTTTCTCTGAGTAGATGTTGTTATAATT  200

seq1  ATTTCAACATATGAGAATTTTAATGTTTGAGTATTGTTGAGTAAAGTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAACATATGAGAATTTTAATGTTTGAGTATTGTTGAGTAAAGTATT  250

seq1  AAAGCACTAATTTCCAATTATGAATTATTCATATTGGAGTAATCACTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACTAATTTCCAATTATGAATTATTCATATTGGAGTAATCACTCAG  300

seq1  GCCTGAGATCTTGACAATTGTTCTCAGAGATCAGTGTGGTAACTCTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGATCTTGACAATTGTTCTCAGAGATCAGTGTGGTAACTCTTTTT  350

seq1  CTGGGTAATCACATTTCCTCCTATAATTACGCTTCCCTAGATGTCCACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTAATCACATTTCCTCCTATAATTACGCTTCCCTAGATGTCCACAT  400

seq1  ACAATTGAAAGACGTTAAAAAAAAATAGCAAAGTTACACAGGAGACTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTGAAAGACGTTAAAAAAAAATAGCAAAGTTACACAGGAGACTAAA  450

seq1  GAATTC  456
      ||||||
seq2  GAATTC  456


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