BAC Information

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BAC

Clone NameB6Ng01-347O07
Chromosome18 (Build37)
Map Location 82,024,393 - 82,160,441
singlet/doubletdoublet
Overlap geneLOC100040871
Upstream geneAtp9b, Sall3, LOC665124, LOC100039458
Downstream geneB020010K11Rik, Galr1, Mbp, EG637748, Zfp236, LOC100039563, Zfp516
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347O07.bB6Ng01-347O07.g
ACCGA129357GA129358
length3051,125
definitionB6Ng01-347O07.b B6Ng01-347O07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,024,393 - 82,024,697)(82,159,305 - 82,160,441)
sequence
tctctatggcagcagtgatttcaattttcttttatttttatgatctctgg
aaagctccctctttatttttatggactctgagctaatcgtgacttagaac
gagaagaatagtaattttttaaaaggtaaagatgtctctgaaggaggcag
gcatcttctgtgcactgtgtgagattgtggctggaatgtagaaaggggga
tgaggcacagagggggatggcaggcataaaatggaagtggtaggcacatt
taacagctagtaaggctggaggaagtggtggggatatggagtaaatggtg
ggggt
gaattcacagaaactgtcacagcatacgtaagttctgcacaggttcaaga
cagataaaatcccaagatggagatggggaatcgggtccaaagttccacac
ctaaccaagaagctatttgtaatttataaccactcgaagaggaaaatcag
ttatcaccaatggagcggcactgagtgtatcaaccacactccagggtaga
ccccatgctcaggagtggtacccgaggggcagtgtagggaagggagctgt
actgtgtttccaaaatccttgtttccaaggagacttagaaggaagattct
cagtgaaaagaaaacggaagtgtaaaacatcatggcaaacaaccgcaagc
atgtgtgcggaaggggctggagagcttctcactgcttttctgaaaagaaa
tgtgggataccgctattcccttgcatgtgagactcaggttgtgacttagg
ggagaatcttctagaatccagtgagacctcggtgtaatgcaattaaatca
ctacccaagtttaaggacctgagggcttgtccttcaccacagactccaga
agactcatggaggctctcgagcccatgggctcacacccaggtcttgttct
ttctgtgtggagctcacagcttagattctgagccatggaagcttaggcag
gtcatatcacaatcacaacctgttttcattgcatgtctcttttatttaaa
attagagataacacgttgtgtgtaactgggcccggctgcagagggcccag
ttgttgcactggattcttgtgccttgaatctgtgtgcagatttatttggt
ggctgaatggattttattttctgctcctcgaagtgtttgcgatctttgtt
gggaaagctctaagaacattccctgttttcacttgcatgctgaagtttgg
tctttgatatgctaagtattgattgctcccagagaccagagactcaatga
tgctatgtggccaacaagttatcccttgtttggttaataaaggatgccta
cagcctatactggcagagagagataggcatggacttgggtgcctgggctt
agtctgaggagctttgaatgggtagaagaagttaaagaggaaagacccta
tgggtcgagtcagaagcatgtctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_82024393_82024697
seq2: B6Ng01-347O07.b_51_355

seq1  TCTCTATGGCAGCAGTGATTTCAATTTTCTTTTATTTTTATGATCTCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATGGCAGCAGTGATTTCAATTTTCTTTTATTTTTATGATCTCTGG  50

seq1  AAAGCTCCCTCTTTATTTTTATGGACTCTGAGCTAATCGTGACTTAGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCCCTCTTTATTTTTATGGACTCTGAGCTAATCGTGACTTAGAAC  100

seq1  GAGAAGAATAGTAATTTTTTAAAAGGTAAAGATGTCTCTGAAGGAGGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAATAGTAATTTTTTAAAAGGTAAAGATGTCTCTGAAGGAGGCAG  150

seq1  GCATCTTCTGTGCACTGTGTGAGATTGTGGCTGGAATGTAGAAAGGGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTCTGTGCACTGTGTGAGATTGTGGCTGGAATGTAGAAAGGGGGA  200

seq1  TGAGGCACAGAGGGGGATGGCAGGCATAAAATGGAAGTGGTAGGCACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCACAGAGGGGGATGGCAGGCATAAAATGGAAGTGGTAGGCACATT  250

seq1  TAACAGCTAGTAAGGCTGGAGGAAGTGGTGGGGATATGGAGTAAATGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCTAGTAAGGCTGGAGGAAGTGGTGGGGATATGGAGTAAATGGTG  300

seq1  GGGGT  305
      |||||
seq2  GGGGT  305

seq1: chr18_82159305_82160441
seq2: B6Ng01-347O07.g_70_1194 (reverse)

seq1  TGAGCCATGCTTTCTTGACTCTGAACCCATGGTGTCTTTCTCCTCTCTTT  50
      |||| |||||||   ||||||   |||||| | |||||||    ||||||
seq2  TGAGACATGCTT--CTGACTC--GACCCATAGGGTCTTTC----CTCTTT  42

seq1  ACCTTCTTCTACCCACTCAAGGCCTCCTCAGACCCCAAGCCCAGGCACCC  100
      | ||||||||||||| |||| | |||||||||  | ||||||||||||||
seq2  AACTTCTTCTACCCATTCAAAG-CTCCTCAGA--CTAAGCCCAGGCACCC  89

seq1  AAGTCCATGCCTATCTCTCTTCTGCCCAGGTATAGGCTGTAGGCAT-CTT  149
      ||||||||||||||||||| ||||||   ||||||||||||||||| |||
seq2  AAGTCCATGCCTATCTCTC-TCTGCC--AGTATAGGCTGTAGGCATCCTT  136

seq1  TATTAACC-AACCAGGGATAACTTGTGGGCCACATAGCATCATTTGAGTC  198
      |||||||| ||| ||||||||||||| ||||||||||||||| |||||||
seq2  TATTAACCAAACAAGGGATAACTTGTTGGCCACATAGCATCA-TTGAGTC  185

seq1  TCTGGGTCTCTGGGAGCAATCAATACTTAGCATATCAAAAGACCAAACTT  248
      ||| |||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCT-GGTCTCTGGGAGCAATCAATACTTAGCATATC-AAAGACCAAACTT  233

seq1  CAGCATGCAAGTG-AAACA-GGAATGTTCTTAGAGCTTTCCCAAC-AAGA  295
      ||||||||||||| ||||| ||||||||||||||||||||||||| ||||
seq2  CAGCATGCAAGTGAAAACAGGGAATGTTCTTAGAGCTTTCCCAACAAAGA  283

seq1  TCGCAAACACTTCGAGGAGCAGAAATTAAAATCCATTCAGCCACCAAATA  345
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCGCAAACACTTCGAGGAGCAGAAAATAAAATCCATTCAGCCACCAAATA  333

seq1  AATCTGCACACAGATTCAAGGCACAAGAATCCAGTGCAACAACTGGGCCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCACACAGATTCAAGGCACAAGAATCCAGTGCAACAACTGGGCCC  383

seq1  TCTGCAGCCGGGCCCAGTTACACACAACGTGTTATCTCTAATTTTAAATA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGCCGGGCCCAGTTACACACAACGTGTTATCTCTAATTTTAAATA  433

seq1  AAAGAGACATGCAATGAAAACAGGTTGTGATTGTGATATGACCTGCCTAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGACATGCAATGAAAACAGGTTGTGATTGTGATATGACCTGCCTAA  483

seq1  GCTTCCATGGCTCAGAATCTAAGCTGTGAGCTCCACACAGAAAGAACAAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCATGGCTCAGAATCTAAGCTGTGAGCTCCACACAGAAAGAACAAG  533

seq1  ACCTGGGTGTGAGCCCATGGGCTCGAGAGCCTCCATGAGTCTTCTGGAGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGTGTGAGCCCATGGGCTCGAGAGCCTCCATGAGTCTTCTGGAGT  583

seq1  CTGTGGTGAAGGACAAGCCCTCAGGTCCTTAAACTTGGGTAGTGATTTAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTGAAGGACAAGCCCTCAGGTCCTTAAACTTGGGTAGTGATTTAA  633

seq1  TTGCATTACACCGAGGTCTCACTGGATTCTAGAAGATTCTCCCCTAAGTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTACACCGAGGTCTCACTGGATTCTAGAAGATTCTCCCCTAAGTC  683

seq1  ACAACCTGAGTCTCACATGCAAGGGAATAGCGGTATCCCACATTTCTTTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTGAGTCTCACATGCAAGGGAATAGCGGTATCCCACATTTCTTTT  733

seq1  CAGAAAAGCAGTGAGAAGCTCTCCAGCCCCTTCCGCACACATGCTTGCGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAGCAGTGAGAAGCTCTCCAGCCCCTTCCGCACACATGCTTGCGG  783

seq1  TTGTTTGCCATGATGTTTTACACTTCCGTTTTCTTTTCACTGAGAATCTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGCCATGATGTTTTACACTTCCGTTTTCTTTTCACTGAGAATCTT  833

seq1  CCTTCTAAGTCTCCTTGGAAACAAGGATTTTGGAAACACAGTACAGCTCC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTAAGTCTCCTTGGAAACAAGGATTTTGGAAACACAGTACAGCTCC  883

seq1  CTTCCCTACACTGCCCCTCGGGTACCACTCCTGAGCATGGGGTCTACCCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTACACTGCCCCTCGGGTACCACTCCTGAGCATGGGGTCTACCCT  933

seq1  GGAGTGTGGTTGATACACTCAGTGCCGCTCCATTGGTGATAACTGATTTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTGGTTGATACACTCAGTGCCGCTCCATTGGTGATAACTGATTTT  983

seq1  CCTCTTCGAGTGGTTATAAATTACAAATAGCTTCTTGGTTAGGTGTGGAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCGAGTGGTTATAAATTACAAATAGCTTCTTGGTTAGGTGTGGAA  1033

seq1  CTTTGGACCCGATTCCCCATCTCCATCTTGGGATTTTATCTGTCTTGAAC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGACCCGATTCCCCATCTCCATCTTGGGATTTTATCTGTCTTGAAC  1083

seq1  CTGTGCAGAACTTACGTATGCTGTGACAGTTTCTGTGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCAGAACTTACGTATGCTGTGACAGTTTCTGTGAATTC  1125