BAC Information

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BAC

Clone NameB6Ng01-349N03
Chromosome18 (Build37)
Map Location 50,302,412 - 50,430,459
singlet/doubletdoublet
Overlap geneHsd17b4, LOC667233
Upstream geneDtwd2, Dmxl1, Tnfaip8, LOC626721
Downstream geneGm93, Hdhd1a, LOC100042373, LOC100042385, Prr16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349N03.bB6Ng01-349N03.g
ACCGA130692GA130693
length2211,112
definitionB6Ng01-349N03.b B6Ng01-349N03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,302,412 - 50,302,632)(50,429,357 - 50,430,459)
sequence
actctattaaaaatgacttatagttagaagtatcctattttaaacatttg
ttaaaaaatagttaagtcatttgcggaagttcttgaaaacaatattgttt
cttagtattaactctttatagtagcttttaccatatttatctaactctgt
ctctgcttctgtgtgtgtgtttgtgtgtattcgtgtgtgtgtgtgtgtat
gtgagtgtgtatgtgagtgtg
gaattctgttgtaggatgtgagcaaaaacatcctatcattcgcagtttgt
gcttgagagggtgaagggagatcagagtcctgagactgtctgaacaattg
gaaatgttgacctggcatacagtagcaagcagtacacttgctggaaaata
ctttaaagtgtatatggaggctttaaccagctctctatctcttgagtgcc
ctaagatttccatatcttagaaatgttgccaataactcaaattcaatctt
ctcccagggaaagtctatgactgcaaattttttgggagcctgacaatatt
taatgtctgataacatttataaaatctcattggggggggggagccactgg
aaagattgctcagcagctaagagaactgactgctcttgcagggaacccag
gtaattaagttcacagctatctaactccagtcctagggtatccagcaccc
ttttctggcctcagtgagcactgtacacacatggtgcatggacatacata
tgcgtttctttttagaaaacaaaaaggcaaaagaattaattcagctggac
gagttggaatgctaggtgaaaaattatcaaatatataccggcagcccccg
ggtctgcagggctcaccgtctaaaacaagcatattgaagacacagaaaag
gcaactgtcagagcaaagaaaatggtgtcctgtggatgctttgcttctct
tccttttatcagcctcccaaagtagagcctgacccagtgaccaaagcata
gacaaagtatagaacagtccagcagctgctgggttgttccaagttgggaa
gaagtacaatgtttgtgaaatccagttgtgtgatgccctttgaatttcct
ggaaaaaaaattggtcctttcaagtagctctctgactcatcaagcatccg
cggtcctgcttcatcatcgctgttatagaaaactacatatatgggcaggt
gttactgaaaattcttccttgtaaaggcaaatctgtttcctgccacctgt
tgtttatcgttgtgatggctaacttggtgtcctacttgactacattctgg
aagcaacctaagcaatgtttggtacaaactgtagaactggattcgtggtg
tgtgtgttgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_50302412_50302632
seq2: B6Ng01-349N03.b_52_272

seq1  ACTCTATTAAAAATGACTTATAGTTAGAAGTATCCTATTTTAAACATTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATTAAAAATGACTTATAGTTAGAAGTATCCTATTTTAAACATTTG  50

seq1  TTAAAAAATAGTTAAGTCATTTGCGGAAGTTCTTGAAAACAATATTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAATAGTTAAGTCATTTGCGGAAGTTCTTGAAAACAATATTGTTT  100

seq1  CTTAGTATTAACTCTTTATAGTAGCTTTTACCATATTTATCTAACTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTATTAACTCTTTATAGTAGCTTTTACCATATTTATCTAACTCTGT  150

seq1  CTCTGCTTCTGTGTGTGTGTTTGTGTGTATTCGTGTGTGTGTGTGTGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTTCTGTGTGTGTGTTTGTGTGTATTCGTGTGTGTGTGTGTGTAT  200

seq1  GTGAGTGTGTATGTGAGTGTG  221
      |||||||||||||||||||||
seq2  GTGAGTGTGTATGTGAGTGTG  221

seq1: chr18_50429357_50430459
seq2: B6Ng01-349N03.g_70_1181 (reverse)

seq1  ACAC-ACACACACA-CACAAATC--ATTC-ACAG-TTGTACCAAAC--TG  42
      |||| ||||||||| ||| ||||   ||| |||| |||||||||||  ||
seq2  ACACAACACACACACCACGAATCCAGTTCTACAGTTTGTACCAAACATTG  50

seq1  CTTA-GTTGCTTCCAG-ATGTAGTCAAGTAGACAACCAAAGTTAGCCATC  90
      |||| ||||||||||| ||||||||||||||   ||| ||||||||||||
seq2  CTTAGGTTGCTTCCAGAATGTAGTCAAGTAGGACACC-AAGTTAGCCATC  99

seq1  ACAACGATAAACAACAGGTTGCCAGGAAACAGATTTGCCTTTACAAGGAA  140
      |||||||||||||||||| || ||||||||||||||||||||||||||||
seq2  ACAACGATAAACAACAGG-TGGCAGGAAACAGATTTGCCTTTACAAGGAA  148

seq1  GAATTTTCAGTAACACCTGCCCATATATGTAGTTTTCTATAAACAGCGAT  190
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAATTTTCAGTAACACCTGCCCATATATGTAGTTTTCTAT-AACAGCGAT  197

seq1  GATG-AGCAGGACCGCGGATGCTTGATGAGTCAGAGAGCTACTTGAAAGG  239
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGCAGGACCGCGGATGCTTGATGAGTCAGAGAGCTACTTGAAAGG  247

seq1  ACCAATTTTTTTTCCAGGAAATTC-AAGGGCATCACACAACTGGATTTCA  288
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACCAATTTTTTTTCCAGGAAATTCAAAGGGCATCACACAACTGGATTTCA  297

seq1  CAAACATTGTACTTCTTCCCAACTTGGAACAACCCAGCAGCTGCTGGACT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATTGTACTTCTTCCCAACTTGGAACAACCCAGCAGCTGCTGGACT  347

seq1  GTTCTATACTTTGTCTATGCTTTGGTCACTGGGTCAGGCTCTACTTTGGG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATACTTTGTCTATGCTTTGGTCACTGGGTCAGGCTCTACTTTGGG  397

seq1  AGGCTGATAAAAGGAAGAGAAGCAAAGCATCCACAGGACACCATTTTCTT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGATAAAAGGAAGAGAAGCAAAGCATCCACAGGACACCATTTTCTT  447

seq1  TGCTCTGACAGTTGCCTTTTCTGTGTCTTCAATATGCTTGTTTTAGACGG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGACAGTTGCCTTTTCTGTGTCTTCAATATGCTTGTTTTAGACGG  497

seq1  TGAGCCCTGCAGACCCGGGGGCTGCCGGTATATATTTGATAATTTTTCAC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCTGCAGACCCGGGGGCTGCCGGTATATATTTGATAATTTTTCAC  547

seq1  CTAGCATTCCAACTCGTCCAGCTGAATTAATTCTTTTGCCTTTTTGTTTT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATTCCAACTCGTCCAGCTGAATTAATTCTTTTGCCTTTTTGTTTT  597

seq1  CTAAAAAGAAACGCATATGTATGTCCATGCACCATGTGTGTACAGTGCTC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAGAAACGCATATGTATGTCCATGCACCATGTGTGTACAGTGCTC  647

seq1  ACTGAGGCCAGAAAAGGGTGCTGGATACCCTAGGACTGGAGTTAGATAGC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGCCAGAAAAGGGTGCTGGATACCCTAGGACTGGAGTTAGATAGC  697

seq1  TGTGAACTTAATTACCTGGGTTCCCTGCAAGAGCAGTCAGTTCTCTTAGC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACTTAATTACCTGGGTTCCCTGCAAGAGCAGTCAGTTCTCTTAGC  747

seq1  TGCTGAGCAATCTTTCCAGTGGCTCCCCCCCCCCAATGAGATTTTATAAA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGCAATCTTTCCAGTGGCTCCCCCCCCCCAATGAGATTTTATAAA  797

seq1  TGTTATCAGACATTAAATATTGTCAGGCTCCCAAAAAATTTGCAGTCATA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCAGACATTAAATATTGTCAGGCTCCCAAAAAATTTGCAGTCATA  847

seq1  GACTTTCCCTGGGAGAAGATTGAATTTGAGTTATTGGCAACATTTCTAAG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCCCTGGGAGAAGATTGAATTTGAGTTATTGGCAACATTTCTAAG  897

seq1  ATATGGAAATCTTAGGGCACTCAAGAGATAGAGAGCTGGTTAAAGCCTCC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGAAATCTTAGGGCACTCAAGAGATAGAGAGCTGGTTAAAGCCTCC  947

seq1  ATATACACTTTAAAGTATTTTCCAGCAAGTGTACTGCTTGCTACTGTATG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACACTTTAAAGTATTTTCCAGCAAGTGTACTGCTTGCTACTGTATG  997

seq1  CCAGGTCAACATTTCCAATTGTTCAGACAGTCTCAGGACTCTGATCTCCC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCAACATTTCCAATTGTTCAGACAGTCTCAGGACTCTGATCTCCC  1047

seq1  TTCACCCTCTCAAGCACAAACTGCGAATGATAGGATGTTTTTGCTCACAT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCCTCTCAAGCACAAACTGCGAATGATAGGATGTTTTTGCTCACAT  1097

seq1  CCTACAACAGAATTC  1103
      |||||||||||||||
seq2  CCTACAACAGAATTC  1112