BAC Information

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BAC

Clone NameB6Ng01-350A16
Chromosome18 (Build37)
Map Location 89,263,856 - 89,410,204
singlet/doubletdoublet
Overlap geneRttn, Cd226
Upstream geneLOC100039961, LOC100039972, LOC623177, LOC665497, LOC100040003, LOC623208, Socs6
Downstream geneDok6, LOC383320, LOC620693
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350A16.bB6Ng01-350A16.g
ACCGA130844GA130845
length1,0871,074
definitionB6Ng01-350A16.b B6Ng01-350A16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,263,856 - 89,264,855)(89,409,161 - 89,410,204)
sequence
gaattctatgaaaatggtgacacagcatactcaaacatataggacacaat
gaaagtagtactaagaggaaaatttataacactcagtgccccggtaaaga
aattggagagatcctacactagcaacttaacagcacacctgaggcctcta
gaacaaaaggaagcaaatatacccaagaggaatagactgcaggaaatagt
caaactcagagcctaaatcagcaaatagaaaacagagaatgatacaaaaa
gaatcaagaaaaccaaaagctggttctttgggaaaatcaacaagggttca
gagacagtatccaaattaaccaaatcagaaatgagatgggagacaggaca
gaaactgaggaaattcaaaacaaaatcagatcctactacaaaagctaata
ctcaataaactggaaaatctagacagataaccacacaccaaattaaatca
agagctggtaaattatctgaacaggcccatattccctgaggaagtagaag
tcattaaaaacatcccaaccaaaaaaaaaaaaaaaaaaaaaaaaaaaaag
ccctgaaccagatggctttagtgcagaattctactagagctatagaatat
tatttttgtactgaaggataactaaaagcaaaaatacattttattggtaa
caatacctagactattaggcttgatgtaatttccccatacttttgcattt
tgaggatattttcataatcagatccttctttgcaaactgggttattttgg
ctttaaataccctatgtgctgcttctgggatattggtttcacaacttacc
ctctttaaaaatataaagattttctttaaatagaaatcagctttgaaaat
attgtgttgcttcttctggtatacttgatagtgctagtgtgaccattact
gttatgcttataatattggaaactatgttttgcctgttgcatattaagtt
tgtagcacatatttatgatgagtgttttttagtaccctactgaatatatt
tataaagaaattaattcatatatccacatggaaagtaaacacctatgatg
cactgagataggtttttttttatgagatctacttagt
gaattccacccgtaggatgaaggcagagactgggaggtttggggaaggct
tgccacagctgtgataggaacctgcctgctggcattggtaccacacactt
ccagctcttcgtccatcccatgatgctttcctgttggacaagccacactg
actgtatcacttgtcactgttgctgcatcagtaacccagaactacctttg
ggcaataggagcttcaccagcctagcctgaagcagccagggtgttgttca
gaagagcaaaagtctcatagctccaccatgaaatatcatttgccatcatc
catttgaagtgcaggtgaaaggtaaagaaaactagcaacattttaaaaac
atgagctaaaagattgcttgactgaaaagcagtaagaaagtgagttacca
tcagagataaaacacagcttcacaaagccttcccaaaggcaggacagaca
gggacagatgtctaaatttttaaaaagagatcagcctgggatgataaagc
aggggctccacccagaaatcacaaaaaagggaagatttacagtaggtccc
aaatgggctgcaactgttcaagccccagacagaaaaaaacgcttgccaca
tggcttggcagatctgattcacatcactcgggattctaagcagtgatcca
ggttgcaggcccagccctttgatatccaaggtgctcctcaagcagctttc
aggaattcttgagtctagataacctttgtgtgagggtaacctgcactcag
attgtaattgtaactcccagtctctcaccatgctacgtggaagtgataca
aatttattaaaatcagtaatacaaagttttttttcgaggcacaagaaagt
gtttcaactccttcaacagtttctgcattaattttccttccagcaagggt
gggaaaaatatagcactgaacaaggagtttttaagtcctagcaagaattt
aatcgaaagggacctcaagatgttgcttgtctccttggtgagactaatgg
ttgggggctaggcaaacacagaaagtgaatgtgcctacagtccacctaat
ggatggatcacagggctctccaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_89263856_89264855
seq2: B6Ng01-350A16.b_137_1131

seq1  GGTAAAGAAATTGGAGAGATCCTACACTAGCAACTTAACAGCACACCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGAAATTGGAGAGATCCTACACTAGCAACTTAACAGCACACCTGA  50

seq1  GGCCTCTAGAACAAAAGGAAGCAAATATACCCAAGAGGAATAGACTGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTAGAACAAAAGGAAGCAAATATACCCAAGAGGAATAGACTGCAG  100

seq1  GAAATAGTCAAACTCAGAGCCTAAATCAGCAAATAGAAAACAGAGAATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGTCAAACTCAGAGCCTAAATCAGCAAATAGAAAACAGAGAATGA  150

seq1  TACAAAAAGAATCAAGAAAACCAAAAGCTGGTTCTTTGGGAAAATCAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAAGAATCAAGAAAACCAAAAGCTGGTTCTTTGGGAAAATCAACA  200

seq1  AGGGTTCAGAGACAGTATCCAAATTAACCAAATCAGAAATGAGATGGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTCAGAGACAGTATCCAAATTAACCAAATCAGAAATGAGATGGGAG  250

seq1  ACAGGACAGAAACTGAGGAAATTCAAAACAAAATCAGATCCTACTACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACAGAAACTGAGGAAATTCAAAACAAAATCAGATCCTACTACAAA  300

seq1  AGCTAATACTCAATAAACTGGAAAATCTAGACAGATAACCACACACCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATACTCAATAAACTGGAAAATCTAGACAGATAACCACACACCAAA  350

seq1  TTAAATCAAGAGCTGGTAAATTATCTGAACAGGCCCATATTCCCTGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCAAGAGCTGGTAAATTATCTGAACAGGCCCATATTCCCTGAGGA  400

seq1  AGTAGAAGTCATTAAAAACATCCCAACCAAAAAAAAAAAAAAAAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAGTCATTAAAAACATCCCAACCAAAAAAAAAAAAAAAAAAAAAA  450

seq1  AAAAAAAGCCCTGAACCAGATGGCTTTAGTGCAGAATTCTACTAGAGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGCCCTGAACCAGATGGCTTTAGTGCAGAATTCTACTAGAGCTA  500

seq1  TAGAATATTATTTTTGTACTGAAGGATAACTAAAAGCAAAAATACATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATATTATTTTTGTACTGAAGGATAACTAAAAGCAAAAATACATTTT  550

seq1  ATTGGTAACAATACCTAGACTATTAGGCTTGATGTAATTTCCCCATACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTAACAATACCTAGACTATTAGGCTTGATGTAATTTCCCCATACTT  600

seq1  TTGCATTTTGAGGATATTTTCATAATCAGATCCTTCTTTGCAAACTGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTTTGAGGATATTTTCATAATCAGATCCTTCTTTGCAAACTGGGT  650

seq1  TATTTTGGCTTTAAATACCCTATGTGCTGCTTCTGGGATATTGGTTTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGGCTTTAAATACCCTATGTGCTGCTTCTGGGATATTGGTTTCAC  700

seq1  AACTTACCCTCTTTAAAAATATAAAGATTTTCTTTAAATAGAAATCAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTACCCTCTTTAAAAATATAAAGATTTTCTTTAAATAGAAATCAGCT  750

seq1  TTGAAAATATTGTGTTGCTTCTTCTGGTATACTTGATAGTGCTAGTGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATATTGTGTTGCTTCTTCTGGTATACTTGATAGTGCTAGTGTGA  800

seq1  CCATTACTGTTATGCTTATAATATTGGAAACTATGTTTTGCCTGTTGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTACTGTTATGCTTATAATATTGGAAACTATGTTTTGCCTGTTGCAT  850

seq1  ATTAAGTTTGTAGCACATATTTTATGATGAGTGTTTTTTTAGTACCTTAC  900
      ||||||||||||||||||| ||||||||||||| |||||||||||| |||
seq2  ATTAAGTTTGTAGCACATA-TTTATGATGAGTG-TTTTTTAGTACCCTAC  898

seq1  TGAATATATTTTATAAAGAAATTATTTCATATAT-CACATGGAAAAGTAA  949
      |||||||| ||||||||||||||| ||||||||| ||||||| |||||||
seq2  TGAATATA-TTTATAAAGAAATTAATTCATATATCCACATGG-AAAGTAA  946

seq1  AACACTATGATGCCACTGAGATAGGTTTTTTTTTTATGAGATCTACTTAG  999
      |   |||||||| |||||||||||| ||||||||||||||||||||||||
seq2  ACACCTATGATG-CACTGAGATAGG-TTTTTTTTTATGAGATCTACTTAG  994

seq1  T  1000
      |
seq2  T  995

seq1: chr18_89409161_89410204
seq2: B6Ng01-350A16.g_67_1140 (reverse)

seq1  ATTGG-GAGCCCTGTGATCCATCCATTAGGT-GACTGT--GAGCATCCAC  46
      ||||| ||||||||||||||||||||||||| ||||||  |  ||| |||
seq2  ATTGGAGAGCCCTGTGATCCATCCATTAGGTGGACTGTAGGCACATTCAC  50

seq1  -TTCTGTGTTTG-CTAGGCCCC-ACCA-TAGTCTCAC--AAGAGAC-AGC  89
       ||||||||||| |||| |||| |||| |||||||||  | ||||| |||
seq2  TTTCTGTGTTTGCCTAGCCCCCAACCATTAGTCTCACCAAGGAGACAAGC  100

seq1  TACATCT---GGGTCCTTTCGA-TAAAATCTTGCTAGTACTT-AAAACT-  133
       ||||||   ||  |||||||| |||| ||||||||| |||| |||||| 
seq2  AACATCTTGAGGTCCCTTTCGATTAAATTCTTGCTAGGACTTAAAAACTC  150

seq1  CTTGTTCAGTGCT-TTTTTTTCC--CCCTTGCTGGAAG--AAAATAATGC  178
      ||||||||||||| | |||||||  |||||||||||||  ||| ||||||
seq2  CTTGTTCAGTGCTATATTTTTCCCACCCTTGCTGGAAGGAAAATTAATGC  200

seq1  AG-AACTGTTGAA-GAGTTG-AACAACTTCTTGTG-CTCG-AAAAAAACT  223
      || |||||||||| |||||| ||||  |||||||| |||| |||||||||
seq2  AGAAACTGTTGAAGGAGTTGAAACACTTTCTTGTGCCTCGAAAAAAAACT  250

seq1  TTGTATTACTGA-TTTAATAAA-TTGTATCACTTCCACGTAGCATGGTGA  271
      |||||||||||| ||||||||| |||||||||||||||||||||||||||
seq2  TTGTATTACTGATTTTAATAAATTTGTATCACTTCCACGTAGCATGGTGA  300

seq1  GAGACTGGGAGTTACAATTACAATCTGAGTGCAGGTTACCCTCACACAAA  321
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGGGAGTTACAATTACAATCTGAGTGCAGGTTACCCTCACACAAA  350

seq1  GGTTATCTAGACTCAAGAATTCCTGAAAGCTGCTTGAGGAGCACCTTGGA  371
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATCTAGACTCAAGAATTCCTGAAAGCTGCTTGAGGAGCACCTTGGA  400

seq1  TATC-AAGGGCTGGGCCTGCAACCTGGATCACTGCTTAGAATCCCGAGTG  420
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAGGGCTGGGCCTGCAACCTGGATCACTGCTTAGAATCCCGAGTG  450

seq1  ATGTGAATCAGATCTGCCAAGCCATGTGGCAAGCGTTTTTTTCTGTCTGG  470
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAATCAGATCTGCCAAGCCATGTGGCAAGCGTTTTTTTCTGTCTGG  500

seq1  GGCTTGAACAGTTGCAGCCCATTTGGGACCTACTGTAAATCTTCCCTTTT  520
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGAACAGTTGCAGCCCATTTGGGACCTACTGTAAATCTTCCCTTTT  550

seq1  TTGTGATTTCTGGGTGGAGCCCCTGCTTTATCATCCCAGGCTGATCTCTT  570
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATTTCTGGGTGGAGCCCCTGCTTTATCATCCCAGGCTGATCTCTT  600

seq1  TTTAAAAATTTAGACATCTGTCCCTGTCTGTCCTGCCTTTGGGAAGGCTT  620
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATTTAGACATCTGTCCCTGTCTGTCCTGCCTTTGGGAAGGCTT  650

seq1  TGTGAAGCTGTGTTTTATCTCTGATGGTAACTCACTTTCTTACTGCTTTT  670
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGCTGTGTTTTATCTCTGATGGTAACTCACTTTCTTACTGCTTTT  700

seq1  CAGTCAAGCAATCTTTTAGCTCATGTTTTTAAAATGTTGCTAGTTTTCTT  720
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAAGCAATCTTTTAGCTCATGTTTTTAAAATGTTGCTAGTTTTCTT  750

seq1  TACCTTTCACCTGCACTTCAAATGGATGATGGCAAATGATATTTCATGGT  770
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTCACCTGCACTTCAAATGGATGATGGCAAATGATATTTCATGGT  800

seq1  GGAGCTATGAGACTTTTGCTCTTCTGAACAACACCCTGGCTGCTTCAGGC  820
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTATGAGACTTTTGCTCTTCTGAACAACACCCTGGCTGCTTCAGGC  850

seq1  TAGGCTGGTGAAGCTCCTATTGCCCAAAGGTAGTTCTGGGTTACTGATGC  870
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGGTGAAGCTCCTATTGCCCAAAGGTAGTTCTGGGTTACTGATGC  900

seq1  AGCAACAGTGACAAGTGATACAGTCAGTGTGGCTTGTCCAACAGGAAAGC  920
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAGTGACAAGTGATACAGTCAGTGTGGCTTGTCCAACAGGAAAGC  950

seq1  ATCATGGGATGGACGAAGAGCTGGAAGTGTGTGGTACCAATGCCAGCAGG  970
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGGATGGACGAAGAGCTGGAAGTGTGTGGTACCAATGCCAGCAGG  1000

seq1  CAGGTTCCTATCACAGCTGTGGCAAGCCTTCCCCAAACCTCCCAGTCTCT  1020
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCCTATCACAGCTGTGGCAAGCCTTCCCCAAACCTCCCAGTCTCT  1050

seq1  GCCTTCATCCTACGGGTGGAATTC  1044
      ||||||||||||||||||||||||
seq2  GCCTTCATCCTACGGGTGGAATTC  1074