BAC Information

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BAC

Clone NameB6Ng01-350E11
Chromosome18 (Build37)5 (Build37)
Map Location 54,323,683 - 54,324,88077,046,736 - 77,046,823
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSnx2, Gm1859, Snx24, Ppic, Prdm6, Ccdc100, Csnk1g3, EG433184, LOC667360
Downstream geneEG545257, LOC100042489, Zfp608, LOC100043089
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350E11.bB6Ng01-350E11.g
ACCGA131002GA131003
length1,188950
definitionB6Ng01-350E11.b B6Ng01-350E11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(54,323,683 - 54,324,880)(77,046,736 - 77,046,823)
sequence
gaattctgatatcatagacatgccttggacattataactaagcagaagaa
aacaccaccctcctacatgcctagaatttccctcctctgcttgcagaagg
ttcatgtggtggtactagatatagaatttatctagcacaacctattttta
aaaaaaataataaaaagaatccctcatcttctcatccatttctaggtaat
aatacatacattaatgtaggccaggaacaacgtcataaaacatgacaagg
agcaactgccaaaaaaacaataacaaccaagtactctgtgctgtcaaata
caaaactagatatgtcaaaacacaaataagtaggtacagcaggaacttga
gatgaatcctggggacaaagaattctccatatgctgtgctggaaaataca
ttcccaagacaaagcttcattaataggaaaattctttgtacatttatcac
tagtaatactacttactatgttttaacactttgactgttcgtatgaagca
aagattatttaactttataaaacaagaaacaacatatcagttcagagtca
aaacttgagtcccagactttaaaatgctaaggtatccaccacgtaaatct
tctatgagcagaaaataagataagttagcgtggaaggccccattagccca
tgtctagtgccaggtctaggatgaagtgtttctaggaatcattcctcctc
caagccacaatgaacacctttgcatagcttacctttatttttgccgttcc
cttaaggaaatattgataaacacattcacaattgagtagaaacgactatt
aaattcaacaaaatattactgctggattcatatggcagctaacagggaaa
tcaccagggagagacaatagatcttaatcctctatcatactcccttaaac
aatatgaggcaagtcctgactaattcatccagacatccaaaattctacca
tgatcaattagtagagttcatgtatagcaatttcttcctattgatatatt
tccttcttggggggggggggcacttcttaggactcagaaaaggcaaacac
tcacagtctaagagttcctaaaacgttacatgaatcccattcatctacca
atgttatatagcagtaaggcttctggggggaagactgattgtaagctgat
tacaattgacaacagcttttctggattaagagcccaat

gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaacactgagat
tccacttcactccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagaggaacactcctccattcttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaagatccagcaatacctcttctgggc
atatatccagaagatgccccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagatgctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gaatactactcagctattaaaaaaatgaatttatgaaattcctagccaaa
tggatggacctggagggcatcatcctgagtgaggtaacccaaacacaaag
gaacttgcacaatatgtactcactgataagtggatattagctcagaaact
taggatacccaagatataagatacaacttgctaaacacatgaaattcatg
aagaacgaagaccaaagtgtggacactttgccccttcttagaaatgggaa
ctaaacacccattgaaggagttacagagacaaaatttggagctgtgacaa
aaggatggaccatctagtgactgccatatgcagggatccatcccataatc
agctcccaaacgctgacaccattgcatacactagcaagattttgctgaaa
ggacccagatatagctgtctcttgtgagactatgcccggggcctagcaaa
cacagaagtagatgctcacagtcaggtaatggatggatcacagggctccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_54323683_54324880
seq2: B6Ng01-350E11.b_49_1236 (reverse)

seq1  AATGGGCTC-TGATCCAAGAAAGCTGTTGTTCAATTTGTAATCAGCTCTA  49
      | ||||||| | |||||  |||||||||| |||| |||||||||||| ||
seq2  ATTGGGCTCTTAATCCAGAAAAGCTGTTG-TCAA-TTGTAATCAGCT-TA  47

seq1  CAAATCAGTGTCCTTCCCCCAGAAGCCCTTACTGCTTATATAACCATGGG  99
      | |||||  ||| | |||||||||| ||||||||| ||||||| ||| ||
seq2  C-AATCA--GTCTTCCCCCCAGAAG-CCTTACTGC-TATATAA-CATTGG  91

seq1  TAGGATGAATTGGGAATCATGT-ACGTTTTAGGAACTTCTTAAGACTTGT  148
      || |||||| ||||| |||||| ||||||||||||| |||| |||| |||
seq2  TA-GATGAA-TGGGATTCATGTAACGTTTTAGGAAC-TCTT-AGAC-TGT  136

seq1  GAGTTGTTTGC--TTTCTGAGTCTTAAGAAGTG-CCCCCCCCCCCAAGAA  195
      ||| |||||||  |||||||||| ||||||||| ||||||||||||||||
seq2  GAG-TGTTTGCCTTTTCTGAGTCCTAAGAAGTGCCCCCCCCCCCCAAGAA  185

seq1  GG-AATATATCAATTAGGAAGAAATTGCTATACATGAACTCTACTAATTG  244
      || |||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGAAATATATCAA-TAGGAAGAAATTGCTATACATGAACTCTACTAATTG  234

seq1  ATCATGGTAGAATTTTGGATGTCTGGATGAATTAGTCAGGACTTGCCTCA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGTAGAATTTTGGATGTCTGGATGAATTAGTCAGGACTTGCCTCA  284

seq1  TATTGTTTAAGGGAGTATGATAGAGGATTAAGATCTATTGTCTCTCCCTG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTAAGGGAGTATGATAGAGGATTAAGATCTATTGTCTCTCCCTG  334

seq1  GTGATTTCCCTGTTAGCTGCCATATGAATCCAGCAGTAATATTTTGTTGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTCCCTGTTAGCTGCCATATGAATCCAGCAGTAATATTTTGTTGA  384

seq1  ATTTAATAGTCGTTTCTACTCAATTGTGAATGTGTTTATCAATATTTCCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATAGTCGTTTCTACTCAATTGTGAATGTGTTTATCAATATTTCCT  434

seq1  TAAGGGAACGGCAAAAATAAAGGTAAGCTATGCAAAGGTGTTCATTGTGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGAACGGCAAAAATAAAGGTAAGCTATGCAAAGGTGTTCATTGTGG  484

seq1  CTTGGAGGAGGAATGATTCCTAGAAACACTTCATCCTAGACCTGGCACTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGGAGGAATGATTCCTAGAAACACTTCATCCTAGACCTGGCACTA  534

seq1  GACATGGGCTAATGGGGCCTTCCACGCTAACTTATCTTATTTTCTGCTCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGGCTAATGGGGCCTTCCACGCTAACTTATCTTATTTTCTGCTCA  584

seq1  TAGAAGATTTACGTGGTGGATACCTTAGCATTTTAAAGTCTGGGACTCAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGATTTACGTGGTGGATACCTTAGCATTTTAAAGTCTGGGACTCAA  634

seq1  GTTTTGACTCTGAACTGATATGTTGTTTCTTGTTTTATAAAGTTAAATAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGACTCTGAACTGATATGTTGTTTCTTGTTTTATAAAGTTAAATAA  684

seq1  TCTTTGCTTCATACGAACAGTCAAAGTGTTAAAACATAGTAAGTAGTATT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCTTCATACGAACAGTCAAAGTGTTAAAACATAGTAAGTAGTATT  734

seq1  ACTAGTGATAAATGTACAAAGAATTTTCCTATTAATGAAGCTTTGTCTTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTGATAAATGTACAAAGAATTTTCCTATTAATGAAGCTTTGTCTTG  784

seq1  GGAATGTATTTTCCAGCACAGCATATGGAGAATTCTTTGTCCCCAGGATT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTATTTTCCAGCACAGCATATGGAGAATTCTTTGTCCCCAGGATT  834

seq1  CATCTCAAGTTCCTGCTGTACCTACTTATTTGTGTTTTGACATATCTAGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCAAGTTCCTGCTGTACCTACTTATTTGTGTTTTGACATATCTAGT  884

seq1  TTTGTATTTGACAGCACAGAGTACTTGGTTGTTATTGTTTTTTTGGCAGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATTTGACAGCACAGAGTACTTGGTTGTTATTGTTTTTTTGGCAGT  934

seq1  TGCTCCTTGTCATGTTTTATGACGTTGTTCCTGGCCTACATTAATGTATG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTTGTCATGTTTTATGACGTTGTTCCTGGCCTACATTAATGTATG  984

seq1  TATTATTACCTAGAAATGGATGAGAAGATGAGGGATTCTTTTTATTATTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTACCTAGAAATGGATGAGAAGATGAGGGATTCTTTTTATTATTT  1034

seq1  TTTTTAAAAATAGGTTGTGCTAGATAAATTCTATATCTAGTACCACCACA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAATAGGTTGTGCTAGATAAATTCTATATCTAGTACCACCACA  1084

seq1  TGAACCTTCTGCAAGCAGAGGAGGGAAATTCTAGGCATGTAGGAGGGTGG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTTCTGCAAGCAGAGGAGGGAAATTCTAGGCATGTAGGAGGGTGG  1134

seq1  TGTTTTCTTCTGCTTAGTTATAATGTCCAAGGCATGTCTATGATATCAGA  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTTCTGCTTAGTTATAATGTCCAAGGCATGTCTATGATATCAGA  1184

seq1  ATTC  1198
      ||||
seq2  ATTC  1188


seq1: chr5_77046736_77046823
seq2: B6Ng01-350E11.g_822_909 (reverse)

seq1  AAATCTTGCTAGTGTATGCAATGGTGTCATCGTTTGGAAGCTGATTATGG  50
      ||||||||||||||||||||||||||||| ||||||| ||||||||||||
seq2  AAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGGAGCTGATTATGG  50

seq1  GATGGATTCCTGGATATGGCAATCACTAGATGGTCCAT  88
      ||||||| |||| |||||||| ||||||||||||||||
seq2  GATGGATCCCTGCATATGGCAGTCACTAGATGGTCCAT  88


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