BAC Information

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BAC

Clone NameMSMg01-045O13
Chromosome18 (Build37)
Map Location 18,075,585 - 18,076,139
singlet/doubletsinglet
Overlap genenone
Upstream gene1700001G01Rik, 4921533I20Rik, LOC100040647
Downstream geneLOC100040658
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045O13.T7 (MSMg01no045_o13.b1)MSMg01-045O13.TJ (MSMg01no045_o13.g1)
ACCAG276419AG276420
length677678
length of high quality
(start - end)
635 (43 - 677)577 (75 - 651)
definitionCHROMAT_FILE: MSMg01no045_o13.b1 PHD_FILE: MSMg01no045_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:58 2005CHROMAT_FILE: MSMg01no045_o13.g1 PHD_FILE: MSMg01no045_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAATAACTCACTTAAAGAAATACAGGAGAACACTGCTAAAGAGTTACAA
GTCCTTAAAGAAAAACAGGAAAACACTGCTAAAGAGTTACAAGTCCTTAA
AGAAAAACAGGAAAACACAACCAAACAGGTAGAAGTCCTTATAGAAAAAC
AGGAAAACACATCCAAACAGGTGATGGAAATGAACAAAACCATACTAGAC
CTAAAAAGGGAAGTAGACAAAATAAAGAAAACCCAAAGTGAGGCGACGCT
GGAGATAGAAACCCTAGGAAAGAAATTTGGAACCATAGATGCCAGCATCA
GCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGACTCC
ATAGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGAT
CCTAACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAACC
TACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGACCA
GCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAA
AGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGG
ACCAGAAAAGAAATTCCTCCCGACACA
TGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACTCCATTTAT
TAATAGGGTTATCTGATTTTCTGGAGTCCACCCTTTGATATATATATATA
TATATATATATATATATATATATATATATATATATATATATGTACATATA
TACTGGATATTAGTCCCCTATCTGATTTAGGATTAGTAAAAATCCTTTCC
CAATCTGTTGGTGGCGTTTTTGTCATATTGACATTGTCTTTTGCCTTACA
GAAGCTTTGCAATTTTATGAGGTCCCATTTGTCAGTTCTCCATCTTAAGA
CTGCTGTATCTCTTGCATTTTGGTAGAAGTAATTTAAAAATGCTTAGGTA
TTTTGTCTTATGGTTTTTATGAGCATTATAGATATAATCCTTTGAAATAA
CTTAGAAAAACTTTATGGTAGACATAAAAATAATTGAGAGTAGTGTTATT
TTGTGTCATCTCAAATTTCTTTATCACCATTTTTTTAAATCTACTTGCAG
AGATATTCTGCTTTTTTCAGTTTAAGGGTGGATGATTGTATTTAATGTCC
TAAATTAATATTATACTATAGTTAATATTAATAATATCCCCTTCCTTTGA
GAAGACACAATAATGGGCTTCTATAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_o13.g1 MSMg01no045_o13.g1 CHROMAT_FILE:
MSMg01no045_o13.g1 PHD_FILE: MSMg01no045_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:58 2005
         (577 letters)



>mm_chr18_18075163_18076139
          Length = 977

 Score = 1021 bits (528), Expect = 0.0
 Identities = 549/556 (98%), Gaps = 2/556 (0%)
 Strand = Plus / Minus

                                                                       
Query: 23  ttattaatagggtta-tctgattttctggagtccaccctttgatatatatatatatatat 81
           ||||||||||||||| | ||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 977 ttattaatagggttact-tgattttctggagtccatcctttgagatatatatatatatat 919

                                                                       
Query: 82  atatatatatatatatatatatatatatatatatatgtacatatatactggatattagtc 141
           ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 918 atatatatatatatatatatatatatatatacatatatacatatatactggatattagtc 859

                                                                       
Query: 142 ccctatctgatttaggattagtaaaaatcctttcccaatctgttggtggcgtttttgtca 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 ccctatctgatttaggattagtaaaaatcctttcccaatctgttggtggcgtttttgtca 799

                                                                       
Query: 202 tattgacattgtcttttgccttacagaagctttgcaattttatgaggtcccatttgtcag 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tattgacattgtcttttgccttacagaagctttgcaattttatgaggtcccatttgtcag 739

                                                                       
Query: 262 ttctccatcttaagactgctgtatctcttgcattttggtagaagtaatttaaaaatgctt 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ttctccatcttaagactgctgtatctcttgcattttggtagaagtaatttaaaaatgctt 679

                                                                       
Query: 322 aggtattttgtcttatggtttttatgagcattatagatataatcctttgaaataacttag 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aggtattttgtcttatggtttttatgagcattatagatataatcctttgaaataacttag 619

                                                                       
Query: 382 aaaaactttatggtagacataaaaataattgagagtagtgttattttgtgtcatctcaaa 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aaaaactttatggtagacataaaaataattgagagtagtgttattttgtgtcatctcaaa 559

                                                                       
Query: 442 tttctttatcaccatttttttaaatctacttgcagagatattctgcttttttcagtttaa 501
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 558 tttctttatcaccatttttttaaatctacttgcagagatattctgcttttttcaatttaa 499

                                                                       
Query: 502 gggtggatgattgtatttaatgtcctaaattaatattatactatagttaatattaataat 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gggtggatgattgtatttaatgtcctaaattaatattatactatagttaatattaataat 439

                           
Query: 562 atccccttcctttgag 577
           ||||||||||||||||
Sbjct: 438 atccccttcctttgag 423



 Score = 97.4 bits (50), Expect = 3e-24
 Identities = 53/54 (98%)
 Strand = Plus / Plus

                                                                 
Query: 64  atatatatatatatatatatatatatatatatatatatatatatatatatatat 117
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 atatatgtatatatatatatatatatatatatatatatatatatatatatatat 934



 Score = 95.5 bits (49), Expect = 1e-23
 Identities = 52/53 (98%)
 Strand = Plus / Plus

                                                                
Query: 65  tatatatatatatatatatatatatatatatatatatatatatatatatatat 117
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 tatatatgtatatatatatatatatatatatatatatatatatatatatatat 932



 Score = 91.6 bits (47), Expect = 1e-22
 Identities = 59/63 (93%)
 Strand = Plus / Plus

                                                                       
Query: 65  tatatatatatatatatatatatatatatatatatatatatatatatatatatgtacata 124
           ||||||| ||||||| ||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 872 tatatatgtatatatgtatatatatatatatatatatatatatatatatatatatatata 931

              
Query: 125 tat 127
           |||
Sbjct: 932 tat 934



 Score = 91.6 bits (47), Expect = 1e-22
 Identities = 59/65 (90%), Gaps = 4/65 (6%)
 Strand = Plus / Plus

                                                                       
Query: 64  atatatatatatatatatatatatatatatatatatatatatatatatatatatgtacat 123
           |||||| ||||||| |||||||||||||||||||||||||||||||||||||||    ||
Sbjct: 873 atatatgtatatatgtatatatatatatatatatatatatatatatatatatat----at 928

                
Query: 124 atata 128
           |||||
Sbjct: 929 atata 933



 Score = 85.8 bits (44), Expect = 8e-21
 Identities = 56/60 (93%)
 Strand = Plus / Plus

                                                                       
Query: 69  tatatatatatatatatatatatatatatatatatatatatatatatatgtacatatata 128
           ||||||| ||||||| ||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 872 tatatatgtatatatgtatatatatatatatatatatatatatatatatatatatatata 931


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 123
Number of extensions: 47
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 11
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)