BAC Information

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BAC

Clone NameMSMg01-045O23
Chromosome18 (Build37)
Map Location 16,752,278 - 16,752,600
singlet/doubletsinglet
Overlap geneCdh2
Upstream geneChst9, LOC670012, LOC100040551, EG225228, LOC100040202, Ppia-ps18_172.1, EG665509
Downstream geneLOC665519, 1700001G01Rik, 4921533I20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045O23.T7 (MSMg01no045_o23.b1)MSMg01-045O23.TJ (MSMg01no045_o23.g1)
ACCAG276438AG276439
length754705
length of high quality
(start - end)
323 (107 - 429)73 (198 - 270)
definitionCHROMAT_FILE: MSMg01no045_o23.b1 PHD_FILE: MSMg01no045_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:00 2005CHROMAT_FILE: MSMg01no045_o23.g1 PHD_FILE: MSMg01no045_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCCCNNNCCCNNNNNCCNNNTTCCCTNCNNTTCTACTTTTCCNCTACTT
ACACCCCTCTCATAATTGCGGCGCTAAACGACTCACTATTTCCACACAAC
CGCGGAATTCTCCCTCATCCTTTTTACTTATTCAATGCAAGGCACATTGC
TTGAGGCTCTGGGACTCAGATGCATTGGAGACCTGGGTATGAACAAACTA
GATTCACTGACTGCCCTTGTGGGGTTTTTAGTCACTTTTGGGGTTTTTAG
CATCACCTCCCTCCTCCCCACTTTTCCTATAAAATTTAGCAACTACAAAT
ATAGTTACTAAATGATTCAGCACCATCTAGCTTTGATCTATCTATGAAAC
AGACCTCAGAAGAAGAATAAAAAAAGCTTCATATACATTCCTAGTTTGAA
GGAGTTCTTGAAAACAAGTATTAAGTTTGGGTTGCAGATGTTATGCAGAT
GTTATACAGCTGGTAAAGAGCTTGTCCAGCATGTAAAAAGCCCTGTGTTT
GATTCTCCAGCACTGCTTTAACTAGCTTGCTTGTGACTACCTGTAACCAT
ATCACCCACTAGGCAGACCTGGTAGGAGGGGATGCTGAAGGTTTTCCTCA
AAATGGTTGCCTAGCCCGCCCAAGGGGGCTCTAGGCCAATCTGTGACATA
TACCACCCCTATCTTAAAAGATCCCTTGCCATCATCGCAGGTCTTTCAGT
ACCCTTGGATTCCGGCGACTGAAAAGTGATGACCTATGTTTCCCGTGCTC
CACC
TGGGGGAGGCCGGCCTCCCTGATTCGGTGAANNANAGAAGGATTCGCGCA
CAACTGACTTGTCCTTGGGAAAAGACTTCCAGCAAGACTCCAGTGTGAGT
AGATCCTGTGCCTTGCCACATCCATACACTATCCCCGCCTTTCTGCCTAG
CTTCAGACTCAGCATTTATTCAGGGCCATTTTGTGTCATCCTCTTGCCAA
GTCGCAGAGCCTCTAAAGCAATACAGCACAGCACTGTCCTTCGACTGGAA
AGGGGTGATGAGCAAGCATGTGAAACCCAGGTTTCCGTGCTGCGATGGAC
GTTTTGACTCCCTGCAGTGGGAGCAGAAATACAACGAAAGCTGTGTTTGT
CCTGGCTTCATGAAGGACGTAGTCTTGGAATGATGAGTGCTTAGGGGTGT
CTAGGTTCCGGTGTTCGACTCAGATTGTTCTGCACGCCCCGGAGCCCACA
TGTCTGACCCAGCCTGATGTCAATACGATCACGCGTGACCCGGACGTATC
TTACTAACAAGGTATGATGAGAGGTCTCTTCTAGACCATGGCTCTGGTCG
CGAACGCCCTGCCGTTTTGTCTCGCACAACAGACTTCCCTTTTTTGATCC
TCATAGCACCCACCCTTAGAATTCACACTTGATTCGCTCCTCGGACCCCT
TCCCAAACGTTTTATTCCCGTCTCCTTACCGTTGCGTGCTCCAAACCCTT
CCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_o23.b1 MSMg01no045_o23.b1 CHROMAT_FILE:
MSMg01no045_o23.b1 PHD_FILE: MSMg01no045_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:00 2005
         (323 letters)



>mm_chr18_16752078_16752800
          Length = 723

 Score =  609 bits (315), Expect = e-179
 Identities = 321/323 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctccctcatcctttttacttattcaatgcaaggcacattgcttgaggctctgggact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctccctcatcctttttacttattcaatgcaaggcacattgcttgaggctctgggact 260

                                                                       
Query: 61  cagatgcattggagacctgggtatgaacaaactagattcactgactgcccttgtggggtt 120
           || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 caaatgcattggagacctgggtatgaacaaactagattcactgactgcccttttggggtt 320

                                                                       
Query: 121 tttagtcacttttggggtttttagcatcacctccctcctccccacttttcctataaaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttagtcacttttggggtttttagcatcacctccctcctccccacttttcctataaaatt 380

                                                                       
Query: 181 tagcaactacaaatatagttactaaatgattcagcaccatctagctttgatctatctatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagcaactacaaatatagttactaaatgattcagcaccatctagctttgatctatctatg 440

                                                                       
Query: 241 aaacagacctcagaagaagaataaaaaaagcttcatatacattcctagtttgaaggagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacagacctcagaagaagaataaaaaaagcttcatatacattcctagtttgaaggagtt 500

                                  
Query: 301 cttgaaaacaagtattaagtttg 323
           |||||||||||||||||||||||
Sbjct: 501 cttgaaaacaagtattaagtttg 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)