BAC Information

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BAC

Clone NameMSMg01-046C04
Chromosome18 (Build37)
Map Location 3,763,943 - 3,764,228
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664794, Crem, EG621440, Cul2, EG621501, Bambi, LOC100039273
Downstream geneLOC435549, EG664867, LOC621666, Lyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931, LOC100039354, LOC433157, 9430020K01Rik, LOC268988
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046C04.T7 (MSMg01no046_c04.b1)MSMg01-046C04.TJ (MSMg01no046_c04.g1)
ACCAG276587AG276588
length678736
length of high quality
(start - end)
294 (48 - 341)279 (69 - 347)
definitionCHROMAT_FILE: MSMg01no046_c04.b1 PHD_FILE: MSMg01no046_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:14 2005CHROMAT_FILE: MSMg01no046_c04.g1 PHD_FILE: MSMg01no046_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TACCTATTTCGTATGATGCGCGGAATTCCTGATCTTTCCAGACATTTTAC
CATGCATGAATGGGTGTTGGATTTTGTCAAATGCTTTCTCAGCATCTAAC
GTGATGATCATCATATGGTTTTTGTCTTTGAGTTTGTTTATATTTTGAAT
TACGTTGATGGATTGCCTTATATTAAACATTCTTGCATACTTGGGATGAA
GCCTACTTGATCATGATGTGTGATTGTTTTGATGTGTTCTTGGATTCGGT
TTGCAAAAAATTTATTGAGTATTTTTGCCTCGATTTTCATAAGTTTTTTA
TTTCTGAAGTTCTCTTTCTTTGTTGGGTGTTTGTGTGGTTTAGGTATCAC
AGTAATTGTGGCTTCATAGAATGAATTGAATACAGTACCTTCTGTTTTTA
TTTTGTGGAATAGTTTGAGGAGTATTGTAATTAGGTCCTCTTTGATAGTC
TGATAGGCTTTTTTTTGTATTTTGTTGTTTCTTTGTTATGTCTCGTTTTG
TCTTTCTCTTTTCCCACCTCTCCCTTTTATCCCTTCTACATCTTTTTCAT
TTTACTATTTTATCACTTTTTCCCTCTTTTTCCTTTTTTCACCTTTTTTT
CTCATTGTCACCTTATTTTCTTTTCCCTATCTTTTACATATATCTTTTTC
TACTCTTTTTTCACTTATATCTTTCTTT
CATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGTACATGTGTTTTGACCTTATTCAGACCTCT
CCAACCCTTCCCAGATGCAGCCTCCTTCCCCACACTCCCAACTTTGTGTC
TTTTTTTTTTTTTTAAAAATAACCCATTAAGACCAATTTGCACTGGCCTT
CTATAGGAGTGTGGTTGGACTCACCAAGGGCCATGCTCTGAGAGGAAACT
GACACCCCATCTCCCAGAAGGTAATAATTGCCATCTGTTCCATAGCTTCC
ATAGGATGGAACCTTGTGGGGTGGTGGGTATAGGGGAGAAGGGAGAANNN
NNCNTGTNCNTACATCCTTTTCATGGCTTCGTCCGTTCTTTATTACACCC
TCCCTCATCTACCCCTATTTTTTTTTTATATATTATTTATTGTAACCTTG
TATTTTTTTTCTCATATTCCCTTTTTATATTATTGTCCTCTTAGTACGAT
GCCCTATTTTCCACTTCACCGCTTTATCTATTTAGTTATCCTTATATTTA
GAATATTTTCATTTCCCCTTTCCGCCCTTTGTTCGTACTTTAGCTCCCAG
CCCTCATTTGCCCCTTCGCTTTCCCTATCCCATCTCTATACCTCCCCTTA
CCCGCGAGTATTTAACAGTATATTGTCCATGATAATCTTCTTATTATATA
TAATTAACACTCATTTCACTCTTCATTTCTTCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_c04.g1 MSMg01no046_c04.g1 CHROMAT_FILE:
MSMg01no046_c04.g1 PHD_FILE: MSMg01no046_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:14 2005
         (279 letters)



>mm_chr18_3763597_3764275
          Length = 679

 Score =  495 bits (256), Expect = e-144
 Identities = 276/288 (95%), Gaps = 11/288 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtac-atgtgttttgaccttattcagacctctccaacccttcccagatgcagcctcctt 59
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tgtacaatgtgttttgaccttattcagacctctccaacccttcccagatgcagcctcctt 573

                                                                       
Query: 60  ccccacactcccaactttgtgtc--------ttttttttttttttaaaaataacccatta 111
           |||||||||||||||||||||||        ||||||||||||||  |||||||||||||
Sbjct: 572 ccccacactcccaactttgtgtctttttttttttttttttttttt--aaataacccatta 515

                                                                       
Query: 112 agaccaatttgcactggccttctataggagtgtggttggactcaccaagggccatgctct 171
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 agaccaatttgcactggccttctataggagtgtggttggactcaccaagggccatgctct 455

                                                                       
Query: 172 gagaggaaactgacaccccatctcccagaaggtaataattgccatctgttccatagcttc 231
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gagaggaaactgactccccatctcccagaaggtaataattgccatctgttccatagcttc 395

                                                           
Query: 232 cataggatggaaccttgtggggtggtgggtataggggagaagggagaa 279
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 cataggatggaaccttgtggggtggtgggtataggggagaagggagaa 347


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)