Query= MSMg01no046_h20.b1 MSMg01no046_h20.b1 CHROMAT_FILE:
MSMg01no046_h20.b1 PHD_FILE: MSMg01no046_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:39 2005
(523 letters)
>mm_chr18_29886752_29887674
Length = 923
Score = 615 bits (318), Expect = e-180
Identities = 448/506 (88%), Gaps = 29/506 (5%)
Strand = Plus / Plus
Query: 4 ggaattcagagttaggatctctatgagataaaaacaggtcggccattgcccactatcaca 63
||||||||||||||| ||||| | |||||||||||||||| | ||||||||||||||| |
Sbjct: 191 ggaattcagagttagaatctccacgagataaaaacaggtcagtcattgcccactatcata 250
Query: 64 tggttagacaggctgccagggcagagacacaaacacgtagaaaaaaaaat--tct-gcaa 120
||| || ||||||||||||||||||||||||||||||| ||||| | | ||||
Sbjct: 251 tggccagccaggctgccagggcagagacacaaacacgtacaaaaa-----ggtgtagcaa 305
Query: 121 gaaagtgtcaaccatcttgctaacattttcagctttttttctgtatttttt-ctttaagc 179
||| |||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 306 gaaggtgtcaaccaccttgctaacattttcagcttttttcctgtatttttttctttaagc 365
Query: 180 atcatccattcaagacaggtactgatgttgtttcataatgaaatatatat--------gt 231
||| ||||||||||||||||||| | | ||||||| |||||||||||| ||
Sbjct: 366 atc---cattcaagacaggtactgacgatatttcatagtgaaatatatatatatatgtgt 422
Query: 232 gtatatatatgtgtatatatatata---------ctgcccaggatatccacctgttactg 282
|| | | | |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 423 gtgtgtgtgtgtgtatatatatatatatatatttctgcccaggatatccacctgttactg 482
Query: 283 gagtcacacatgactcatctaagacctgactgcttccaggccatatgctgttcagagttc 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gagtcacacatgactcatctaagacctgactgcttccaggccatatgctgttcagagttc 542
Query: 343 attctttcagctagcagcacactgtctggaagaagcacatgaaaacacagtgaaattctt 402
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 543 attctttcagctagcagcacactgtctggaagaaacacatgaaagcacagtgaaattctt 602
Query: 403 gccatagttcaaaatcaggtgagtgaaacacattactcactgtgtcatacataagtagtg 462
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gccatagttcaaaaccaggtgagtgaaacacattactcactgtgtcatacataagtagtg 662
Query: 463 tgatcacagaaagagagagagagaga 488
|||||| || ||||||| |||||||
Sbjct: 663 tgatcagggagagagagaaagagaga 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no046_h20.g1 MSMg01no046_h20.g1 CHROMAT_FILE:
MSMg01no046_h20.g1 PHD_FILE: MSMg01no046_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:40 2005
(632 letters)
>mm_chr18_29895044_29896075
Length = 1032
Score = 1094 bits (566), Expect = 0.0
Identities = 572/574 (99%)
Strand = Plus / Minus
Query: 59 tatgcagaaaaatggtgggtcctctttacatatccagtctgttagtctatgtcttggtgt 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 tatgcagaaaaatggtgggtcctctttacatatccagtctgttagtctatgtcttggtgt 973
Query: 119 aggggaatgctagggccaggaaatgggaatgagtaggttggtgagcaggggagggactgg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972 aggggaatgctagggccaggaaatgggaatgagtaggttggtgagcaggggagggactgg 913
Query: 179 atatagggagttttcagaggggaaaccagggaaggggataacatttgaaatggaaaagaa 238
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 atatagggaattttcagaggggaaaccagggaaggggataacatttgaaatggaaaagaa 853
Query: 239 gaaaaagtctaataaaaaaatttttaaaaagaatgtgatttcaccccaagaaataagtcc 298
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 852 gaaaaagtctaataaaaaaatttttaaaaagaatgtgatttcaacccaagaaataagtcc 793
Query: 299 agtctcagtggtgttattagcagcttgtaatagcaactcaaatgccacagagtttcatgc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 agtctcagtggtgttattagcagcttgtaatagcaactcaaatgccacagagtttcatgc 733
Query: 359 tttgtgctaccataaacttgtagatctatgtttctcatgtttatgtattccactccctgt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tttgtgctaccataaacttgtagatctatgtttctcatgtttatgtattccactccctgt 673
Query: 419 tacgtaaagatttttatccaaaagcttcctgttaaaagcaagtgagtcacaaacttttta 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tacgtaaagatttttatccaaaagcttcctgttaaaagcaagtgagtcacaaacttttta 613
Query: 479 actctgaatattgaaagaatttatcctctatcctacattgagtttgatgtttgtattgat 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 actctgaatattgaaagaatttatcctctatcctacattgagtttgatgtttgtattgat 553
Query: 539 caagggtttccactacttgtagagaagggtcagggaagagcttgtatgatccccacacca 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 caagggtttccactacttgtagagaagggtcagggaagagcttgtatgatccccacacca 493
Query: 599 tcacagatcatctgcactaaggctgatttgcaga 632
||||||||||||||||||||||||||||||||||
Sbjct: 492 tcacagatcatctgcactaaggctgatttgcaga 459
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
