BAC Information

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BAC

Clone NameMSMg01-046K04
Chromosome18 (Build37)
Map Location 84,722,365 - 84,722,824
singlet/doubletsinglet
Overlap geneZfp407
Upstream geneTshz1, Zadh2, LOC669856
Downstream geneCndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik, Cyb5, Fbxo15, 1700034H14Rik, LOC100039765
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046K04.T7 (MSMg01no046_k04.b1)MSMg01-046K04.TJ (MSMg01no046_k04.g1)
ACCAG276964AG276965
length695697
length of high quality
(start - end)
552 (41 - 592)460 (73 - 532)
definitionCHROMAT_FILE: MSMg01no046_k04.b1 PHD_FILE: MSMg01no046_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:50 2005CHROMAT_FILE: MSMg01no046_k04.g1 PHD_FILE: MSMg01no046_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAAATTTGCGGCGCTAAACGACTCCTATTTCAAGAGGACCGCGGAATTC
ACTGATTTACACTCTCTGGTTGTGAACTTCCTTGCAGGAAGAGGGAGATC
TACACAGGCATTACTCCCTTAGGAGAATCTCTCACTCTCCTTGCAGTCTG
ACCCTGTGCCCTGAGCAGACCTTGGCTGCTGGCTCCTCACCCAATCCCAT
AACAGCCAGAGGAAGCTCAACTCCCAGGGGCTCTGAAAGGCCCAGGGTCA
CAGGAGAGGCCACAACATCTGCCCAGCACCCTGCATAACTGGGTTCTCAG
GATCCAGGAACGCATAAAGCCCCACTCAGACAGTGGCATGAGTTCCTTCT
GGTCTGAACTCATGCCCAGAGAGGACCTAGGGTGCTGACTCTGCACCCAC
TCTTACAACTCCCAGACACTCTGAAACAAAAAGAACTATACAAAAAAGGA
AAAACAAAATTCAACAAAACAAGGAGTTGGTTCTTTGAGAAAAATCAACA
AAATAGATAAACCCTTAGCCAGACTAACCAGACAGCACATACACAGTATC
CAAATTAACAAAGTCAGAAAGGAAAAGGGAGACATAAAAACAGAATCTGA
GAAAATTTAAAAAAAAAAAATCACATCCTACTACAAAAGCATATATTTCA
CCAACATGTAAAATTGCGATATAATAGACATTTTTCTAGACAGAA
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAAGCTGGAGAAATCTGAGGCAAGTTGA
TGGGCACTGAGAAATATCCTTAGTGACACACTGTACACACCAGTGATTTT
GTTTGTATTTGTGCTTTTAAAATGTTCCTTCCATTAGTACAAAGAATACT
TCAAGAAATATTTTTATCAGTTGTATGAAAAATATTTAACATCTCATTCA
ATCTGTCTATGGTATTTAACTTTGACTTTACATCTTAGAAATATAATTGA
GAATTGGGAAGACTCACTAAAACATTAAAACTGTATGGGTGAGATAATTA
TGGGAATAAGAAAGTTACAAATTAATGCATGTGATCCACTTTGGGGACAG
CAGTTCTCACCTAGACTGAAGGTAGTAGTACTTAACATTTAGCTTGTTTT
CCACAGTTAAAAGTCTTATCTGTAATGTGTGACTCGAGTCCAAACCTTAT
TTTATGTTAAATTTACTCAGGATCAAAACCATTCAAGTGCAAGATATGCC
ATTTTGCAACAGCTCAGCTTGGAGATGCCAGAAACCATGTGAAAAGGCAC
CTTGGGATGAGGGAGTACAAGTGTCACGTCTGTGGGTGAGTAATAAGGCA
CCTTTGCTGTGGGACCCAGAGCCCTGGGCGGGAAAACTATTGTTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_k04.g1 MSMg01no046_k04.g1 CHROMAT_FILE:
MSMg01no046_k04.g1 PHD_FILE: MSMg01no046_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:50 2005
         (460 letters)



>mm_chr18_84722165_84723024
          Length = 860

 Score =  890 bits (460), Expect = 0.0
 Identities = 460/460 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagctggagaaatctgaggcaagttgatgggcactgagaaatatccttagtgacacact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 aaagctggagaaatctgaggcaagttgatgggcactgagaaatatccttagtgacacact 601

                                                                       
Query: 61  gtacacaccagtgattttgtttgtatttgtgcttttaaaatgttccttccattagtacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gtacacaccagtgattttgtttgtatttgtgcttttaaaatgttccttccattagtacaa 541

                                                                       
Query: 121 agaatacttcaagaaatatttttatcagttgtatgaaaaatatttaacatctcattcaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 agaatacttcaagaaatatttttatcagttgtatgaaaaatatttaacatctcattcaat 481

                                                                       
Query: 181 ctgtctatggtatttaactttgactttacatcttagaaatataattgagaattgggaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ctgtctatggtatttaactttgactttacatcttagaaatataattgagaattgggaaga 421

                                                                       
Query: 241 ctcactaaaacattaaaactgtatgggtgagataattatgggaataagaaagttacaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ctcactaaaacattaaaactgtatgggtgagataattatgggaataagaaagttacaaat 361

                                                                       
Query: 301 taatgcatgtgatccactttggggacagcagttctcacctagactgaaggtagtagtact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 taatgcatgtgatccactttggggacagcagttctcacctagactgaaggtagtagtact 301

                                                                       
Query: 361 taacatttagcttgttttccacagttaaaagtcttatctgtaatgtgtgactcgagtcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 taacatttagcttgttttccacagttaaaagtcttatctgtaatgtgtgactcgagtcca 241

                                                   
Query: 421 aaccttattttatgttaaatttactcaggatcaaaaccat 460
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 aaccttattttatgttaaatttactcaggatcaaaaccat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)