BAC Information

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BAC

Clone NameMSMg01-047K13
Chromosome18 (Build37)
Map Location 39,175,467 - 39,175,832
singlet/doubletsinglet
Overlap geneArhgap26
Upstream genePcdh1, LOC100042583, 1700086O06Rik, 0610009O20Rik, Pcdh12, Rnf14, Gnpda1, LOC240219, LOC100041839, Ndfip1, Spry4, 9630014M24Rik, LOC100041865, LOC100041875, LOC100042671, LOC666809, LOC100041894, Fgf1, EG545253
Downstream geneNr3c1, Pabpc2, LOC100041939
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047K13.T7 (MSMg01no047_k13.b1)MSMg01-047K13.TJ (MSMg01no047_k13.g1)
ACCAG277648AG277649
length850708
length of high quality
(start - end)
110 (64 - 173)367 (76 - 442)
definitionCHROMAT_FILE: MSMg01no047_k13.b1 PHD_FILE: MSMg01no047_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:02 2005CHROMAT_FILE: MSMg01no047_k13.g1 PHD_FILE: MSMg01no047_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGCGGAATT
CCCATAAAAGCACAGACACTGGATTCGTGGAAAGATATTGGAGAGAGGCC
CCTTGGTCTTGCAAACTTTATCTGCCTCAGTATAAGGGAACGCCAGAGCC
AAGAAGTGGGAGTGGGTGGGTAGGGGATCTTCTTTTTCTCCCTTTTTCCC
CCTTTTTTTCTCCTCCCTTCCTTTTTCCCCCCCCTTTTTTCCCCCTTTCC
CTTCTTCTTTCCCTCCTCTCTTTTTCTCCCCTCTCTCTTTCTCTTTTTCT
CCCTCCCCCCTCCTTATTTTCTCCCCCCTTTTTCTTTTTTTTCCTTTTTT
TTTTCTTTTTCTTCCCCCCCTTTTTCCCCCCTTTTTTTTTTTTTCCCCCT
TCTCCTCCCCTTTTTTTTTTTTTTTCCCCCTTTTTTTCCCCCCCCTTCCT
CTTTTTTTCTTTTTTTTTTTTTCTTCCCCTTTCTTTTTTCTTCTCTTCTT
CCTCCTCTCTCCTTTCTTTTTTTTTTCCTCCCCTTTCTTTCTTTTTTTTT
TTTCCCCCTTTTTATCTCCCCCCTTTCTCCCCTCTCTTCTTTTTCTCTTC
TTCTTTTTTTTCTTTTTTCAACCTCTCCCCTTCTTTTCTTTCTTCTCCTC
TTTTTTTCTCCCCCCTTTTTCTCTTTTTTTTCTTTCCCCCCCCCCTTTTC
TTTTCTTTATTTTCCTTTCTCCTCTTTTCTCTTTTCTCCTTTCACCCTCT
CTTTTTTCTCTTTCTCTTTTCCCCTTCTCTATTTTTCCTTTTCCCTTTCT
CTCTTTTTTCTCCCCTTTTCTTTTTTTCCTCTCTCCTTTTTCCCCTCCCC

CAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTTTTGGTCTCAGTGGGATGTGTA
GTATTAATGACCTACAATAAAGTAGCCGCTGTTGTCACCATCATCTTGTC
AGTGCCAGTAAGGCAGGTTTGTAGACGTGATGCTTCCGTTCTGGCTGCAA
TAGCCAGATTACTTAAACAACCTGAAGGAGTGAAAACCGAGCAAGACGCT
TAAACAAAACGCATTTGCTATGGTGTGTAGCTAGAAAGCCCAGGGCTATT
CCAATTTTGCATTTCACAGGATCCCTTATCCCCAAAGGGTACCTTCAGCT
CTGGTTTCTCTCTGTGATTGAACTCCTTATTCTTCTTGGGTCGTTCCATT
CTCAGGTGCCTCTTCCCTCATCTTTGCCAGATGACTTATGGTCCGTGTAA
GCTCAGAACTTACGGATAAGTTCATAAGTCTAAGCTTGGGCTTTGTTGGC
TTGTTCATGAATTATGTGTTCATCCTTGAGATAACTTTTGAAGCCGGTCT
GCCCCTCCACTATATTATATGCATGTCGAAACAAATGTCTCTGTAAATCA
GCTATGTATTTTTGTTCCCACCTTTTTAATTACCTGCTACTCCACAAATG
ATAATTAGAAAATATGTTAGCTCTCCTTAACACTTCTTTTCATTACTATT
TTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_k13.g1 MSMg01no047_k13.g1 CHROMAT_FILE:
MSMg01no047_k13.g1 PHD_FILE: MSMg01no047_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:02 2005
         (367 letters)



>mm_chr18_39175267_39176033
          Length = 767

 Score =  661 bits (342), Expect = 0.0
 Identities = 360/366 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttttggtctcagtgggatgtgtagtattaatgacctacaataaagtagccgctgttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttttggtctcagtgggatgtgtagtattaatgacctacaataaagtagccgctgttgt 260

                                                                       
Query: 61  caccatcatcttgtcagtgccagtaaggcaggtttgtagacgtgatgcttccgttctggc 120
           |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 261 caccatcatcttgtcagtgccagtaaggcacgtttgtagaagtgatgcttccgttctggc 320

                                                                       
Query: 121 tgcaatagccagattacttaaacaacctgaaggagtgaaaaccgagcaagacgcttaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcaatagccagattacttaaacaacctgaaggagtgaaaaccgagcaagacgcttaaac 380

                                                                       
Query: 181 aaaacgcatttgctatggtgtgtagctagaaagcccagggctattccaattttgcatttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaacgcatttgctatggtgtgtagctagaaagcccagggctattccaattttgcatttc 440

                                                                       
Query: 241 acaggatcccttatccccaaagggtaccttcagctctggtttctctctgtgattgaactc 300
           ||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 441 acaggatcccttagccccaaagggtaccttcagctctggtttctctctgccattgaactc 500

                                                                       
Query: 301 cttattcttcttgggtcgttccattctcaggtgcctcttccctcatctttgccagatgac 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 cttattcttcttgggtcgttccattctcaggtgcctcttccctcatctttgcaagatgac 560

                 
Query: 361 ttatgg 366
           ||||||
Sbjct: 561 ttatgg 566


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)