Query= MSMg01no047_m23.b1 MSMg01no047_m23.b1 CHROMAT_FILE:
MSMg01no047_m23.b1 PHD_FILE: MSMg01no047_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:13 2005
(617 letters)
>mm_chr18_29420623_29421639
Length = 1017
Score = 1170 bits (605), Expect = 0.0
Identities = 611/613 (99%)
Strand = Plus / Plus
Query: 5 gaattcttttcagtctcacaagcctcatggctacttttagtgactttttaagttctcaaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttcagtctcacaagcctcatggctacttttagtgactttttaagttctcaaa 264
Query: 65 agccttcccatcctaaatacaaagaagttgagagctcttattctaggagttcattgtata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agccttcccatcctaaatacaaagaagttgagagctcttattctaggagttcattgtata 324
Query: 125 tttgaaactacatgagagacaatggtggtcattcatccacaggccaacatgtctttgatc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttgaaactacatgagagacaatggtggtcattcatccacaggccaacatgtctttgatc 384
Query: 185 agtgctcatgcttatgtcctctgtaaactcagaatagacatgtttaatatgctctgtttc 244
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 385 agtgctcatgcttatgtcctctgtaaactcagaatagacatgtttaatacgctcagtttc 444
Query: 245 cccacctatttgttgagttaaataattatgaacagtgaataaagttttttccagttgttc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cccacctatttgttgagttaaataattatgaacagtgaataaagttttttccagttgttc 504
Query: 305 aggtatgataactgttgagcaacaattttgctccctataattgaaatcacaattacttta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aggtatgataactgttgagcaacaattttgctccctataattgaaatcacaattacttta 564
Query: 365 atagacactgagccagaacctgtaaatctctacagctatttgtatcattctcctgtacac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atagacactgagccagaacctgtaaatctctacagctatttgtatcattctcctgtacac 624
Query: 425 tttctgccccacctacccaccccctagttcaactctgtctctcattctctttgtttcaat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tttctgccccacctacccaccccctagttcaactctgtctctcattctctttgtttcaat 684
Query: 485 tctgtattggttctcttctctcaaaagcttgattctgactgtccaggaattttataactt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tctgtattggttctcttctctcaaaagcttgattctgactgtccaggaattttataactt 744
Query: 545 aggttgtgcagactgccaagtttccaatagtggtatgaagtactgcttgtgtgtgtgtgt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aggttgtgcagactgccaagtttccaatagtggtatgaagtactgcttgtgtgtgtgtgt 804
Query: 605 gtgtgtgtgtgtg 617
|||||||||||||
Sbjct: 805 gtgtgtgtgtgtg 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no047_m23.g1 MSMg01no047_m23.g1 CHROMAT_FILE:
MSMg01no047_m23.g1 PHD_FILE: MSMg01no047_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:13 2005
(637 letters)
>mm_chr18_29528683_29529716
Length = 1034
Score = 932 bits (482), Expect = 0.0
Identities = 524/542 (96%), Gaps = 9/542 (1%)
Strand = Plus / Minus
Query: 101 taagatcacatacttttcttgccaaagaccaaaatttgattctaaacagctctctgctta 160
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1034 taagatcacatacttttcttgccaaggaccaaaatttgattctaaacagctctctgctta 975
Query: 161 ctatgcctcaagccctagggtatactaagcctccaacctccatagacacctgcgttccaa 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974 ctatgcctcaagccctagggtatactaagcctccaacctccatagacacctgcgttccaa 915
Query: 221 cccatttatccatacacagactcggagatatacacatacacatactt-----taaaatat 275
|||||||||||| |||||| |||||||||||||| |||||||||||| |||||||
Sbjct: 914 cccatttatccacacacaggctcggagatatacatatacacatacttaaaaataaaataa 855
Query: 276 aataaatcttaaaaaaatattgttccataagggaactttgaaggagctatttattgggtt 335
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 854 aataaatctt-aaaaaatattgttccataagaaaactttgaaggagctatttattgggtt 796
Query: 336 caagaaaataccatgccaggaaggttggagaaaattaatatgtgtgtacttcttggagta 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 caagaaaataccatgccaggaaggttggagaaaattaatatgtgtgtacttcttggagta 736
Query: 396 gggaagtataaaaaagagggagaaaactggttatgttttctgagttacatcttgagaaag 455
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gggaagtataaagaggagggagaaaactggttatgttttctgagttacatcttgagaaag 676
Query: 456 cagactacctgaccaatggagccctgccaacagcattgtgggttgaaggtcttagagatt 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 cagactacctgaccaatggagccctgccaacagcattgtgggttgaaggtcttagagatt 616
Query: 516 ataagaacgtatctccttaagggaatatttatcacttacagtctcttatctgttccttga 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ataagaacgtatctccttaagggaatatttatcacttacagtctcttatctgttccttga 556
Query: 576 atgtgtatgcctttacatgttctggctttagaacactgcagaaagatattttctatttag 635
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 555 atgtgtatgcctttacatgttctggctttagaacactgcagaaaga---tttctatttag 499
Query: 636 gg 637
||
Sbjct: 498 gg 497
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1034
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1024
Effective search space: 642048
Effective search space used: 642048
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
