BAC Information

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BAC

Clone NameMSMg01-049B08
Chromosome18 (Build37)
Map Location 22,906,320 - 22,906,917
singlet/doubletsinglet
Overlap geneNol4
Upstream gene4921528I01Rik, LOC546708, LOC100040547, Asxl3
Downstream geneLOC100040579, LOC665797, Dtna
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049B08.T7 (MSMg01no049_b08.b1)MSMg01-049B08.TJ (MSMg01no049_b08.g1)
ACCAG278669AG278670
length1,2511,273
length of high quality
(start - end)
620 (28 - 647)365 (80 - 444)
definitionCHROMAT_FILE: MSMg01no049_b08.b1 PHD_FILE: MSMg01no049_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:43 2005CHROMAT_FILE: MSMg01no049_b08.g1 PHD_FILE: MSMg01no049_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTCATTGCGGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCA
AACTTGACTCTTGGCACTGTGACTACCCTTTCTGGGTGTACCTGTAACCA
CATGCACCATTCGGAGAATTTACCCATGGTTTGAAGGTTAGTCCTTGGAT
GAAGTAAAGGCATAAAATTTCAGAGATTGCAAGGTTAAATTCTGTTTAGT
TTGGTTTAGTTTTTTGTTGAGCCCACCCTTCTTCTTCATTGCCACTGACC
GACCACATGGTGAGCTATAATTATGCCCTTCATAGTTTATGAAGCTTGAT
GAGTTAATTGGATTTTATGGAGCTGTTTGAGCTATGGACATGAAAGGTGT
TTGGATGTGCTAAATCCTTTCTTTCAAATGTCCATTTTATACATATCTGG
ATTAAGCTCATTAATATGCCACACACGCCTGAAGCCAGCCAGGGGCAAGG
ACAGAAGCTGAGCGCTTCCTCGGACATCAGAGTTCACAGAATTTAAGCGA
CTCCCTCTGCTCATCAAGACACATCTAGCGTTCTGTTCTTGCACATACAA
ATCTGGAATTTGTTTGTGATCTACGAGAAACTTTCCCTCCAGTTTGGCTA
CTTAAAAAAAATGCCTGAGTTCACTTTTATTTGCCTCTGACAGCATAACC
ATAAGAATTAAAAGTTCTCGCTGAGCACTGGTGGCCCACCCCTTTAGTCC
CAGCACTCGGAGGCAGAGGCAAGCAGATTTCTGAGTTTCAGGCCAGTCTG
GTCTACACAGTGAGTTCCAGAACAGCCAGTGCTACCCAGAGAAACCCTGT
CTTGGAAAGAGAGACAGAATCCGCCTAGTTCTCTCTCTTCTCTCTTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTTTCATTTTGGTTTTGTTGTTGTTT
TTCTGAAGACATCCCCCCTTTTTTTTCTATGACAATTTTTTAAATCCCAT
CTTTTTTCTCTGGAATGCACTCCCCAAAGTTTCTTATTACTCCATTAAAT
CTGGTCTAATCCCTCGTACTATCTTCTTTGATTTTTACCACTATTTATTC
CTTTATTAATTATTACTTTTTGCTCCCTTAAAAGGATATTTTTCTTTTTA
GCGTCCTTATTCTAAAGTTCTTTTAACATCATCTTTAAATCTTCTTTACT
TTATCTTATATCCAATTCTTCTCTTATTTGTTTCTAAACTCTTTACTTTC
TATCTATTTACTTCTGTTTATTTCTTCTTCTAAATATATTCTTTTCACTT
T
NCTTCACACTGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTCTATGGATTCATTTTTTTTTATTGGCTGAG
TAATGCTCCCCACTTTAGCCATTCTTCTGTTGGGGGCATCTAGGATGTTT
CCAAATAATGACTATTATGAAAAGAGCAGCAATCGATATGGTTGTCCAAA
TTTCTTCTAGTAGGATGAAACATCCTTTGTGTATATGCTTAAGAATCATA
TAGTTGGGACTTGAGGTATATCAATTCCTATCTTTCTGAGGAGCCACCAC
ACTAGTTTCCATACTGGCTGCATGAATTTGCACTCCTTACCGGCAATGTA
TGTGTATTCGTCTTACTAAACACATCCTTGCCAATATGGGCTGTCATTTG
TTTTATTGATCTTGACCATTCTGACTGGTGTGAAACAAGATTTGAAAATT
TTGATTTGTATATCCCGATGGCTAGGGATGTTGAACATCTTCGCAAGTTT
TAAGTGTTTCTTAACCATTTGAGTTTCGTGTATTGATAATTCTCTGTTTT
GATTTGTACTTTATCTTAATCGGATTGTTTTTGTTTTCTTGATATGCTTA
TCGAGTTATTTATATATTTTGAATACAAGCCTTCTCTTATCTATGTAACA
GGCAAAAACCTTCTCCCACTCTGTACGCTGTTGCTTTGTCCGAATGTTCG
TGTTCTTTGCTGAGCAGTTCAGTTTCCTGACCACCCCTTCTTAATTGTTG
ATTAGTGCCTGCACTTATGGTGTTCAAAAAGTACTTTCCTAAGTCAATGG
TTTCAACGCTATTCCTCACTTAGTATTCTGTCAAGGTTCCTAATATCTGT
CCTGGGGTTGCCCCCTTTAAACCATTTTAAATTTGAATTTCGTGTATGAT
ACCAAGAAACGAACACTTTGGATTTTTTCCTTCTAACTTCATTCAAATCA
TTTTTCTCCCTGGACCATTTTGTTGAACCATTAATCTTTTTCCCCCACGG
GATATTTTCTTGACCTTCCTTTTAAATAAAATTCCCTTGGTCCCTAAATG
TTGAATTCCTCGTTCCCGTCTAATTTACATGAATACCAATTGTCATGTTT
ATTTTTGCCTAAATCATAATAAATCTTTTTTTTGTAACACCCCCCCTATT
CTGAAACTGTGTGAATATCTAACATCCATATCTTTTTTCTATATTTCAAC
ACATCAATTAAACTTCCTTTTCATTTTTCTTNCACNTATGATCTCTTCAT
CAATCATCAAGCATTCTTTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_b08.b1 MSMg01no049_b08.b1 CHROMAT_FILE:
MSMg01no049_b08.b1 PHD_FILE: MSMg01no049_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:43 2005
         (620 letters)



>mm_chr18_22906104_22907121
          Length = 1018

 Score =  975 bits (504), Expect = 0.0
 Identities = 576/600 (96%), Gaps = 2/600 (0%)
 Strand = Plus / Minus

                                                                       
Query: 17  gaattcaaacttgactcttggcactgtgactaccctttctgggtgtacctgtaaccacat 76
           ||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||
Sbjct: 814 gaattcaaacttgactcttggcattgagactaccctttcagggtgtacctgtaaccacat 755

                                                                       
Query: 77  gcaccattcggagaatttacccatggtttgaaggttagtccttggatgaagtaaaggcat 136
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 gcacaattcggagaatttacccatggtttgaaggttagtccttggatgaagtaaaggcat 695

                                                                       
Query: 137 aaaatttcagagattgcaaggttaaattctgtttagtttggtttagttttttgttgagcc 196
           ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 694 aaaatttcagaaattgcaaggttaaattctgtttagtttagtttagttttttgttaagcc 635

                                                                       
Query: 197 cacccttcttcttcattgccactgaccgaccacatggtgagctataattatgcccttcat 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 cacccttcttcttcattgccactgaccgaccacatggtgagctataattatgcccttcat 575

                                                                       
Query: 257 agtttatgaagcttgatgagttaattggattttatggagctgtttgagctatggacatga 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 574 agtttatgaagcttgatgagttaattggattttatggagctgtttgagctatgaacatga 515

                                                                       
Query: 317 aaggtgtttggatgtgctaaatcctttctttcaaatgtccattttatacatatctggatt 376
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  
Sbjct: 514 aaggtgtttggatgtgctaaatcctttctttcaaatgtctattttatacatatctggagg 455

                                                                       
Query: 377 aagctcattaatatgccacacacgcctgaagccagccaggggcaaggacagaagctgagc 436
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| 
Sbjct: 454 aagctcattaatatgccacacacgcctgaagtcagccaggggcaaggacagaagctgaga 395

                                                                       
Query: 437 gcttcctcggacatcagagttcacagaatttaagcgactccctctgctcatcaagacaca 496
           ||||| |||||||||||||||||||||||||||| || || ||||||||||||||| |||
Sbjct: 394 gcttcatcggacatcagagttcacagaatttaagtgaatcactctgctcatcaagataca 335

                                                                       
Query: 497 tctagcgttctgttcttgcacatacaaatctggaatttgtttgtgatctacgagaaactt 556
           |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||
Sbjct: 334 tctagcgttctgttcttgcacatagaaatctggaatttgtttgtgatctaagagaaaatt 275

                                                                       
Query: 557 tccctccagtttggctacttaaaaaaaatgcctgagttcacttttatttgcctctgacag 616
           |||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 274 tccctc-agtttgggtacttaaaaaaa-tgcctgagttcacttttatttgcctctgacag 217


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1018
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1008
Effective search space:   614880
Effective search space used:   614880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)