Query= MSMg01no049_d13.b1 MSMg01no049_d13.b1 CHROMAT_FILE:
MSMg01no049_d13.b1 PHD_FILE: MSMg01no049_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:00 2005
(605 letters)
>mm_chr18_64335510_64336515
Length = 1006
Score = 598 bits (309), Expect = e-175
Identities = 360/377 (95%), Gaps = 2/377 (0%)
Strand = Plus / Minus
Query: 18 gaattc-aaggaaacagaattggccggtgattgatttcttatcttttgaaaactagaaga 76
|||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 393 gaattcaaaggaaacagaattggcaggggattgatttcttatcttttgaaaactagaaga 334
Query: 77 gaggacacccaggagtgtctgactgagcaggctggataagaatctatgaggctagtccta 136
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gaggaaacccaggagtgtctgactgagcaggctggataagaatctatgaggctagtccta 274
Query: 137 gcctgaggcaaacattagccacacataactattctcccttcaaaacagtcccatttggaa 196
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gccagaggcaaacattagccacacataactattctcccttcaaaacagtcccatttggac 214
Query: 197 tggagaggaagctcagaggttaagaacacatcctggaacttgagtttgatttctagtgcc 256
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 213 tggagaggaagctcagaggttaagaacacatactggaacttgagtttggtttctagtgcc 154
Query: 257 tactttcacaacatgactggttcataacgacctataaccagctccaaggaatctgataca 316
||| ||||||||| | |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 153 tacgttcacaacaaggctggttcataacgacctataaccagctccaagaaatctgataca 94
Query: 317 ctctttgggtacttatgagaatctccccctacccccaccccaatgtggcaattcacagac 376
|||||| ||| |||||||||| |||||| ||||| |||||||||||||||||||||||||
Sbjct: 93 ctcttttggtccttatgagaacctcccc-taccctcaccccaatgtggcaattcacagac 35
Query: 377 acacacacacacacaca 393
|||||||||||||||||
Sbjct: 34 acacacacacacacaca 18
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1006
Length adjustment: 10
Effective length of query: 595
Effective length of database: 996
Effective search space: 592620
Effective search space used: 592620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no049_d13.g1 MSMg01no049_d13.g1 CHROMAT_FILE:
MSMg01no049_d13.g1 PHD_FILE: MSMg01no049_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:01 2005
(692 letters)
>mm_chr18_64323409_64324499
Length = 1091
Score = 1253 bits (648), Expect = 0.0
Identities = 681/692 (98%), Gaps = 1/692 (0%)
Strand = Plus / Plus
Query: 1 gtgctctggaaatccaaagtcatgttattgatcctcggtgactggcacctaatactccag 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 gtgctctggaaatccaaagtcatgttattgatccttggtgactggcacctaatactccag 260
Query: 61 agttaaaagtgaggctgggttttgatatatagccctgctcatctcctgagctggcatgaa 120
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttaacagtgaggctgggtttcgatatatagccctgctcatctcctgagctggcatgaa 320
Query: 121 tattggcaccatgaccaatggcttactccagaaagattcctctaagatttgaaagtaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattggcaccatgaccaatggcttactccagaaagattcctctaagatttgaaagtaaga 380
Query: 181 aagagagcagagctcagatatctagcacattgcttctgcttctgtgagaagctcttacca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagagagcagagctcagatatctagcacattgcttctgcttctgtgagaagctcttacca 440
Query: 241 tggaaacagaacatctaggtcggctgaaggatgctatgtgttgggaattatttcttgtgt 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggaaacagaacatctaggttggctgaaggatgctatgtgttgggaattatttcttgtgt 500
Query: 301 cttagaacaaagagatttgagatagttcaaacatccatgggtataacaaactgcctcata 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 cttagaacaaagagatttgagatagttcaaacatccatgggtatgacaaactgcctcata 560
Query: 361 ttttttaatgaaaggaggatagttcaactctctaatgacagaggacttacggtggaccac 420
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 ttttttaatgaaaggaggatagttcaactctctaatgacagaggacttagggtggaccac 620
Query: 421 agtaccatctgccccttttaatacatagcttgccatttcagacagtgatgctatgaagga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtaccatctgccccttttaatacatagcttgccatttcagacagtgatgctatgaagga 680
Query: 481 tggtgcagtagacaaaaggctaatagaacactgagcattttttaattgaacaaatgactg 540
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 681 tggtgcagtagacaaaaggttaatagaacactgagcattttttaattgaagaaatgactg 740
Query: 541 caagaccccatagcagactgaatggtaataacacttacagtcataactttagactgtgtg 600
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 741 caagaccccatatcagactgaatggtaataaca-ttacagtcataactttagactgtgtg 799
Query: 601 tctcagagacttgctattcattgagtgtgaggtaataaatatagaaacacattgctaagc 660
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tttcagagacttgctattcattgagtgtgaggtaataaatatagaaacacattgctaagc 859
Query: 661 ttcaacagaaatctgagtccaaaaggacatta 692
||||||||||||||||||||||||||||||||
Sbjct: 860 ttcaacagaaatctgagtccaaaaggacatta 891
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1091
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1081
Effective search space: 737242
Effective search space used: 737242
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
