BAC Information

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BAC

Clone NameMSMg01-052F04
Chromosome18 (Build37)
Map Location 81,505,772 - 81,678,333
singlet/doubletdoublet
Overlap genenone
Upstream geneKcng2, D330025C20Rik, Ctdp1, LOC669389, LOC100039336, A430076E10Rik, LOC100039348, Nfatc1, Atp9b, Sall3, LOC665124
Downstream geneLOC100039458, LOC100040871, B020010K11Rik, Galr1, Mbp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052F04.T7 (MSMg01no052_f04.b1)MSMg01-052F04.TJ (MSMg01no052_f04.g1)
ACCAG280840AG280841
length688690
length of high quality
(start - end)
386 (71 - 456)233 (75 - 307)
definitionCHROMAT_FILE: MSMg01no052_f04.b1 PHD_FILE: MSMg01no052_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:54 2005CHROMAT_FILE: MSMg01no052_f04.g1 PHD_FILE: MSMg01no052_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:54 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(81,678,122 - 81,678,333)(81,505,772 - 81,506,004)
sequence
CTTAATTTGCGGCCGCTTTACGACTCCTATATTCAGAGAAGGGGCGGAAT
TCAGTGGTCTTCCCTCCAGAGTTCCCTTCAGGGTACCATGGATGCCATCT
CTCCAGAGTCCTCTGCAGGGCGCTGTGGTTGCCATCTTATGATGTCACTT
TAATTTTCCTTTGCTGATGTACTGTTTTGGTAAAAGTGACAGTTTCACTT
GCTCTGGGTCAGGATATGTTGTAGAATGAACCCCAGTTGCAATCCCTATA
ATTTTTTCTCAGGAATAAACAGGGTTAAAGGCACTGACAATTCTGGACTT
GACTCTTACTCCAACGGCGATACAATGTCCTCCGCTTTCTGCTAACCATT
CGTTCCAGTGGTTACACATATCAGCGTTGGAATTATTGAAACACATTTCT
GGCTATGTCCACACATACAAGAGACCATCTTTCATGAGGCTGAAGACTTC
TTTCAGTTCCAAGGTTGCGTAGAACGTAACCTTTCCTTCTGTGACTAAAT
GGTTCCAGACATCACAATGAAGTTCACTTATGTTTGGCATATTTGTCTTC
ACTTATGGGATCCTAAGTTGGGATGACCGTATTGGCTGTCAACTTCGATA
ACTGCTGGTACCAAACAACACCCCAAACAGGCTACGTATACCTGCTAACA
TATCGTTTTGTCCTAAGAAATCCTATTAACCGCGCATC
CGATGCTGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACCCAGGAAGCAGCTGCTTTAATTTGGAG
GTGTGAGATGTCCTGGGGTCTGGCCCAACCATACCCCACTAAAGCTGACC
ATTGCTGTGTCTGCAGCAATGACTTTCCTTATGAATTTCCTTGGGGACCT
TTGAAGTAGAAGCCAAATGCCATGAGGAACTATTGTGTAGTTATTCATAT
AGGTTAAAATATCCTATCATTGAGGAAGACATGTTACACTCAGGAATTTC
ACAGAGCTTACAAGACTCAGGAGGTCCATCAACAATTACCAGGGAGGAAG
AGAATCCTTAGTGCCATTACCTGACAATTGAACAGTTATCTACAATGTTA
GCTTTGTGACTTGCCACTCATGCTTGGGTAGGTGTCTGTGCCAATGCAGC
CTTCTCAGACACCCATGTTCCTATAACCAACTGCACTTCTGGAAAATCTG
ACCTTGGGTGAAATCTATTTCTTTGGTCTAATACCAGTTCCTTCTCTGGG
CTGAACAGATATTTGTTTATGCCTTTCCAGGAAAAGTTACCACGAATGAC
TAAGATGAGTTTAGGGGAGTATTTGTCTATACCCTTCCCTTGGTGTCTAG
ATGTACATCCTGAGCTGATCTGCCTGTACATGTGAGCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_f04.b1 MSMg01no052_f04.b1 CHROMAT_FILE:
MSMg01no052_f04.b1 PHD_FILE: MSMg01no052_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:54 2005
         (386 letters)



>mm_chr18_81677998_81678783
          Length = 786

 Score =  387 bits (200), Expect = e-112
 Identities = 209/212 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttcccttcagggtaccatggatgccatctctccagagtcctctgcagggcgctgtggtt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 336 gttcccttcagggtaccatggatgccatctctccagagtcctctgcagggtgctgtggtt 277

                                                                       
Query: 61  gccatcttatgatgtcactttaattttcctttgctgatgtactgttttggtaaaagtgac 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 276 gccatcttatgatgtcactttaattttcctttgctgttgtactgttttggtaaaagtgac 217

                                                                       
Query: 121 agtttcacttgctctgggtcaggatatgttgtagaatgaaccccagttgcaatccctata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 216 agtttcacttgctctgggtcaggatatgttgtagaatgaaccccagttgtaatccctata 157

                                           
Query: 181 attttttctcaggaataaacagggttaaaggc 212
           ||||||||||||||||||||||||||||||||
Sbjct: 156 attttttctcaggaataaacagggttaaaggc 125


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no052_f04.g1 MSMg01no052_f04.g1 CHROMAT_FILE:
MSMg01no052_f04.g1 PHD_FILE: MSMg01no052_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:54 2005
         (233 letters)



>mm_chr18_81505572_81506204
          Length = 633

 Score =  427 bits (221), Expect = e-124
 Identities = 230/233 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggaagcagctgctttaatttggaggtgtgagatgtcctggggtctggcccaaccatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggaagcagctgctttaatttggaggtgtgagatgtcctggggtctggcccaaccatac 260

                                                                       
Query: 61  cccactaaagctgaccattgctgtgtctgcagcaatgactttccttatgaatttccttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccactaaagctgaccattgctgtgtctgcagcaatgactttccttatgaatttccttgg 320

                                                                       
Query: 121 ggacctttgaagtagaagccaaatgccatgaggaactattgtgtagttattcatataggt 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggcctttgaagtagaagccaaatgccatgaggaactattgtgtagttattcatataggt 380

                                                                
Query: 181 taaaatatcctatcattgaggaagacatgttacactcaggaatttcacagagc 233
           |||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 taaaatatcctatccttgaggaagacatgttagactcaggaatttcacagagc 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)