BAC Information

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BAC

Clone NameMSMg01-052L14
Chromosome18 (Build37)
Map Location 86,984,031 - 86,984,585
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545269, LOC545270, LOC665402, Neto1, Cbln2, LOC100039872, LOC100039881, LOC665437
Downstream geneLOC435580, LOC546719, LOC383318, Ppia-ps18_1039.1, LOC329008
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052L14.T7 (MSMg01no052_l14.b1)MSMg01-052L14.TJ (MSMg01no052_l14.g1)
ACCAG281138AG281139
length700702
length of high quality
(start - end)
556 (41 - 596)245 (69 - 313)
definitionCHROMAT_FILE: MSMg01no052_l14.b1 PHD_FILE: MSMg01no052_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:25 2005CHROMAT_FILE: MSMg01no052_l14.g1 PHD_FILE: MSMg01no052_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATGCGCGGAATTCT
AGTCTATCACAACCTGATGTGTATATGGGTAGTCCTGCCCCTGAATTTTT
ACTACCATTTTTTGCTACCTGTATTCTTGATATTGATTCTGACTATAGCG
AAATGAAACCTTTACATAGTTTTATTTTGCATTTCCATGGTAGCAAAGGA
TGTGATGACTTCACTAGCCATTTTATACTTTCACGTAAATGACATTACAG
TTATTTCTGAGAGGCCTTGGATACAAATACAACATGATGAGGTAGAGTTA
TGGGTCAGAATAATCACCAGAACTTTGAGATCTACCTCTAACTGTAATTT
TGGTCTATTTTGAGATTATGAGAAAAATGTAGGGTTATAGCCAAGAAAAC
AAAATGTACTCAAAAGTTGTATATATTTAGACCTTCAGAATAGGACCTTG
ACATTTTAATACTATTATTTGAAATAGCTATGTATAAAGGAATATTGTCT
CCAAGTAGTGAACTTTCATTACGTTAATTGTTCTAGAAGAGAAGAGTCAT
CCATCTTGTACAACTAGCTATGACTCATATCAGCTGTGATATAAAGTATT
TTGTTCTAATGTAGGTTTTCTTACTTTTATGAATACCTGCTATGTTTTAT
ATTTTCCATAGTGAGCAAACATGCATTCAATTTCCCTGGCTCCACCATAC

CAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTGCTTATCTCTGTACCCCATTGTTTAATAG
TGTTATTTGATTCTCTGGAATTCAATTTTGAGTTATATATATATATTATA
TATATATATATATATATATATATAATATATATATATTAGATGTTAGTCCC
CTATCAGAGATTGGATTGGTAAAGATCTTTTTCCAATCTGTTGGTGGCCT
TTTTGTCTTATTGACATTAACTTCTTACTCGAGTCCATGCGGAAAAGCAA
AACCTCATTAAGTACTTAGATAGGTCACTGTCAGAGTCTGTTTTTACTTT
GGACTTTACAACATCACCCCTTCTTCAGAGAATTTATCCTTGGAAAGGAC
AGCTCATAACATGTATTTTCATCAATCGTTTTATTTATTGACAAGTCACA
TGTTGCCCCCTCTGAGTACCCCCTTGCAGAGTTCTTCCCCCATTCTCCTG
TCCTTTCCCCTCTGAGAGGGCGCCTCCCTGGGATATCCCCCCCCAGGCAA
GGTTTCTTGAACTCATGGTCTTACTAAGGTAATCTTACCAGTTTTCCCCG
GGGGAACCATTTACCAATTTTGAAAATAGGAGCGGCTCTCCGACTACCCC
TCTTGCTTCCTAACTTGATCCTCTCTTTGAGCCCACTCTTTTTGCTAAGG
AT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_l14.b1 MSMg01no052_l14.b1 CHROMAT_FILE:
MSMg01no052_l14.b1 PHD_FILE: MSMg01no052_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:25 2005
         (556 letters)



>mm_chr18_86983668_86984623
          Length = 956

 Score = 1004 bits (519), Expect = 0.0
 Identities = 546/555 (98%), Gaps = 1/555 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   ggaattctagtct-atcacaacctgatgtgtatatgggtagtcctgcccctgaattttta 61
           ||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 918 ggaattctagtctaaacacaacctgatttgtatatgggtagtcctgcccctgaatttgta 859

                                                                       
Query: 62  ctaccattttttgctacctgtattcttgatattgattctgactatagcgaaatgaaacct 121
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 ctaccattttttgctagctgtattcttgatattgattctgactatagcgaaatgaaacct 799

                                                                       
Query: 122 ttacatagttttattttgcatttccatggtagcaaaggatgtgatgacttcactagccat 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ttacatagttttattttgcatttccatggtagcaaaggatgtgatgacttcactagccat 739

                                                                       
Query: 182 tttatactttcacgtaaatgacattacagttatttctgagaggccttggatacaaataca 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tttatactttcacgtaaatgacattacagttatttctgagaggccttggatacaaataca 679

                                                                       
Query: 242 acatgatgaggtagagttatgggtcagaataatcaccagaactttgagatctacctctaa 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 acatgatgaggtagagttatgggtcagaataatcaccagaactttgagatctacctctaa 619

                                                                       
Query: 302 ctgtaattttggtctattttgagattatgagaaaaatgtagggttatagccaagaaaaca 361
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 618 ctgtaattttggtctattttgaggttatgagaaaaatgtagggttatagccaagaaaaca 559

                                                                       
Query: 362 aaatgtactcaaaagttgtatatatttagaccttcagaataggaccttgacattttaata 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aaatgtactcaaaagttgtatatatttagaccttcagaataggaccttgacattttaata 499

                                                                       
Query: 422 ctattatttgaaatagctatgtataaaggaatattgtctccaagtagtgaactttcatta 481
           |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ctattatttgaaatagttctgtataaaggaatattgtctccaagtagtgaactttcatta 439

                                                                       
Query: 482 cgttaattgttctagaagagaagagtcatccatcttgtacaactagctatgactcatatc 541
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cgttaattgttctggaagagaagagtcatccatcttgtacaactagctatgactcatatc 379

                          
Query: 542 agctgtgatataaag 556
           |||||||||||||||
Sbjct: 378 agctgtgatataaag 364


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)