BAC Information

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BAC

Clone NameMSMg01-053G05
Chromosome18 (Build37)
Map Location 33,622,618 - 33,622,787
singlet/doubletsinglet
Overlap geneD0H4S114
Upstream geneGypc, LOC100041160, LOC100041170, Tslp, Wdr36, Camk4, Stard4, EG433170
Downstream geneENSMUSG00000073610, LOC666281, LOC100041258, Epb4.1l4a, EG666296, Ppia-ps18_318.1, Ppia-ps18_319.1, LOC666313, Apc, Srp19, Reep5, Pkd2l2, 2610024E20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053G05.T7 (MSMg01no053_g05.b1)MSMg01-053G05.TJ (MSMg01no053_g05.g1)
ACCAG281617AG281618
length714755
length of high quality
(start - end)
221 (74 - 294)170 (75 - 244)
definitionCHROMAT_FILE: MSMg01no053_g05.b1 PHD_FILE: MSMg01no053_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:17 2005CHROMAT_FILE: MSMg01no053_g05.g1 PHD_FILE: MSMg01no053_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGG
AATTCTTTGTATATATTCGCAATAAGTCCCCTATCTGATTTAGGATTGGT
AAAGATCCTTTCCAATCTATTGGTGGCCTTTTTGTCTTATTGACAGTGTC
TTTTGCCTTACAGAAGCTTTGCAATTTTATAAGGTCCCATTCGTCAATTA
TCGATCTTACAACACAAGCCATTGCTGTTCTGTTCAGAAATTTTTCCCCT
GTGCCCATATCTTCGAGGCTTTTTCCCATTTTGTACTCTATAAGTTCCAG
AGTCTCTGGATTTGTGCGGAGCTCCTTGATCCACCTATACTTGAGCTTAC
TACACTTCGCATTCTTCTACATGACAACTGTCAGATGAGCCTGCACTATT
TGCTGAAAATGCTGTCTTTTCTCCACTAGACGGTTTTACGCCCCCTTTGT
CTTACACTAAGTGTACTACCATGTGTCCTGCATTTATATCTGGATCTTCA
GCTCAATTTCCACAGTTTTCCCTGCCTACTGCTGTTCTAATTACTATGCA
TCTTTTTTCTATATTGTATCTGCATTATTTCCCTGACGTTCCACTTTGCC
CTTCTCTTCCTATTTTCTTTTTATTGTTTGACATCTTTTTTTTCCTTTTT
CTCCCCCCTTTTATTCTTTCTCTTCTATTTTCTTTTTTTCTTTTCCCTTT
TCTCCCAATCATTC
CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCCACAAATTCTTTTGTGAAGGGGTGGGGTTTTGC
TTGCTGGTGTGGTTAATGTTCTTGTCACTTGTTGAGAGCTGTTTTGTTCC
TTTGCATTAAATGCACTTTGGTGCATGCAAGCTCCCCCTCCCTTTATAAA
ACCCTTACACTTGATTACTCTTTCAGGGCTGCTGCTGCGGCGGGCGGCCG
GTGTGTGTGTGTGTGTGGGGGGGTCACCTTCCATCCCTTTTTTTCCCGTC
ACACTCTATCACTTTCTCGTACGTCTTTTTTTTTCTTCCCCCATCTCCCA
CTGTCCTTTTCTCTTTCTCTTCGTCCCTCTCCTTTTCTTTTTCCCCCTCT
TTTATTCTTCTTCTCTTCCCTCTCCTTTTTTTTTCATAAAATATTATAAT
ATTTCCCCAATTTCCCACCCCCTTTCACTTCACAATTCTTATCCTTCTCC
CTATTTTCCCTTACTAATTCACTCTTTCTCCCTTTACTCCATTTTCCTTT
TTATCAACCCCACTTTCACACATATTTTCACATCAATACCATTTTTCTTC
ACCCATTCTTTTTACCCCCCTTTTCACCCACCTTTCCCCACTTTACCTTC
CATTTCCCCCTTTTCTCCATTTCCCACCCACTTTTTTTCCTTCTTATTTC
TTTCCCATTATCACCTTTTTCACCCTACACCAATTTTTTTTCTTTTTTCC
CCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_g05.g1 MSMg01no053_g05.g1 CHROMAT_FILE:
MSMg01no053_g05.g1 PHD_FILE: MSMg01no053_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:17 2005
         (170 letters)



>mm_chr18_33622418_33622987
          Length = 570

 Score =  306 bits (158), Expect = 6e-88
 Identities = 167/170 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttttgtgaaggggtggggttttgcttgctggtgtggttaatgttcttgtcacttgttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 370 tcttttgtgaaggggtggggttttgcttgctggtgtggttaatgttcttgttagttgttg 311

                                                                       
Query: 61  agagctgttttgttcctttgcattaaatgcactttggtgcatgcaagctccccctccctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 agagctgttttgttcctttgcattaaatgcactttggtgcatgcaagctccccctccctt 251

                                                             
Query: 121 tataaaacccttacacttgattactctttcagggctgctgctgcggcggg 170
           |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 250 tataaaacccttacacttgattactctttcagggttgctgctgcggcggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 570
Length adjustment: 8
Effective length of query: 162
Effective length of database: 562
Effective search space:    91044
Effective search space used:    91044
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)