BAC Information

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BAC

Clone NameMSMg01-053O06
Chromosome18 (Build37)
Map Location 62,839,023 - 62,839,477
singlet/doubletsinglet
Overlap genenone
Upstream geneIl17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2, Adrb2, Htr4, Fbxo38, Spink10, EG408198
Downstream gene2700046A07Rik, Apcdd1, Napg, 9430028L06Rik, 9030411M15Rik, LOC627792, Txnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053O06.T7 (MSMg01no053_o06.b1)MSMg01-053O06.TJ (MSMg01no053_o06.g1)
ACCAG281979AG281980
length735703
length of high quality
(start - end)
252 (71 - 322)458 (73 - 530)
definitionCHROMAT_FILE: MSMg01no053_o06.b1 PHD_FILE: MSMg01no053_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:56 2005CHROMAT_FILE: MSMg01no053_o06.g1 PHD_FILE: MSMg01no053_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGG
AATTCTTTGTTCATTCCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGACCCTTTCCCAATCTGTTGGTGGTCTT
TTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTC
TGTTCAGGAATTTTTCCCCTGTGTCTATATCTTCAAGGCTTTTCCCCACT
TTCTCCTCTATAATTTTCAGTGCCTCTGGCTTTATGTGATGTTCCTTGAT
CCTCTTACATTTGACCCCCCCACAAGGAGATAAGTACTGTATCGATTCTC
CTTCTTTCACCTTATTACTATCACGTTGTGCCATTACCCTATCGATGTAA
ATTGTCGTCTTTTCTCCTACTGCCATGCCTTTATCCTCTTTTTGTTTTCA
CACCTTTGTGCTTTTAGGCCCCGTTTCTTTCCTTTCTTGTGCCTTTCTAC
TTCTTTTCCCTTGTTTTTACCTTGCCCCGCTCCCATCCTCCCTTTTCCTT
TCCCTCTCTCCTCCTACATGTCTCTCTCTACCTCACCTTTTATCTTCCTT
CCCCCTGCTGTATTTTCTTTTTTTTTTTCTTTTTT
CAATGATAGGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTCATTTGTCTGGAACAGAGAATGTCAA
CTAAAAATAGAAAACATCTCCTTTTAAAGGTTTTAAGATGAACCATATGT
CTGAAAATAGTGATGCTTTTAAAAGCATTTTGAGCTACGTATTTAATAAT
CCCCATCCCTTTCTCTTTAAAAATTTCCAACTTATATATTTGTGGTGCAT
TTATGTTGACAGGTTGACTACATGAATAGAAAATAGCTTGTTACTACCTA
GCTAGAATTCTTTGAGAAAATTACTCAACCGACCTTGAGAAATCCAGTAC
TTTGACAATTCTAGCTAATGTGTCATGAAAGATGCCTAATTACTATTTTC
AAATGAAAATAGTTTTTCTTTCATACACTATATTCTGATGGCAGTTTCTT
CTTCCCTGGCTCTGCCCAGACCCTTTCCATATCCTCACCTACCCAAGTCA
CCCCTTTCTTTCTCTCTCTTGCTCATTATAATACATACAAGCCCATGATG
ATGATGATGGTGATGATAATAATAATAAAACTCATATAACTTATTAACAA
ACTAACCTGAATATGTGAAAAAAAACCATTAGAAAAAACCGGGAAAAGAA
AGCAAAATAATCTGTACCTGAAACCCTTACCAATACCTAGGCACATACAC
TCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_o06.g1 MSMg01no053_o06.g1 CHROMAT_FILE:
MSMg01no053_o06.g1 PHD_FILE: MSMg01no053_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:56 2005
         (458 letters)



>mm_chr18_62838947_62839804
          Length = 858

 Score =  851 bits (440), Expect = 0.0
 Identities = 452/456 (99%), Gaps = 1/456 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcatttgtctggaacagagaatgtcaactaaaaatagaaaacatctccttttaaaggtt 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ctcatttgcctggaacagagaatgtcaactaaaaatagaaaacatctccttttaaaggtt 472

                                                                       
Query: 61  ttaagatgaaccatatgtctgaaaatagtgatgcttttaaaagcattttgagctacgtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ttaagatgaaccatatgtctgaaaatagtgatgcttttaaaagcattttgagctacgtat 412

                                                                       
Query: 121 ttaataatccccatccctttctctttaaaaatttccaacttatatatttgtggtgcattt 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ttaataatccccatccctttttctttaaaaatttccaacttatatatttgtggtgcattt 352

                                                                       
Query: 181 atgttgacaggttgactacatgaatagaaaatagcttgttactacctagctagaattctt 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 351 atgttgacaggttgactacatgaatagaaaatagcttgttactgcctagctagaattctt 292

                                                                       
Query: 241 tgagaaaattactcaaccgaccttgagaaatccagtactttgacaattctagctaatgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tgagaaaattactcaaccgaccttgagaaatccagtactttgacaattctagctaatgtg 232

                                                                       
Query: 301 tcatgaaagatgcctaattactattttcaaatgaaaatagtttttctttcatacactata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 tcatgaaagatgcctaattactattttcaaatgaaaatagtttttctttcatacactata 172

                                                                       
Query: 361 ttctgatggcagtttcttcttccctggctctgcccagaccctttccatatcctcacctac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 ttctgatggcagtttcttcttccctggctctgcccagaccctttccatatcctcacctac 112

                                               
Query: 421 ccaagtcacccctttctttctctctcttgctcatta 456
           |||||||||||| |||||||||||||||||||||||
Sbjct: 111 ccaagtcacccc-ttctttctctctcttgctcatta 77


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)