BAC Information

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BAC

Clone NameMSMg01-055B18
Chromosome18 (Build37)
Map Location 7,434,795 - 7,435,408
singlet/doubletsinglet
Overlap geneMpp7
Upstream geneEpc1, LOC665047, 4921524L21Rik, LOC100039583, EG665053, Rab18, LOC620787, LOC100039635, Mkx, LOC664778, Armc4
Downstream geneEG622384, LOC100039562, LOC100039606, Wac, LOC665121, LOC225134, LOC665132, EG433158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055B18.T7 (MSMg01no055_b18.b1)MSMg01-055B18.TJ (MSMg01no055_b18.g1)
ACCAG282868AG282869
length710746
length of high quality
(start - end)
665 (42 - 706)614 (77 - 690)
definitionCHROMAT_FILE: MSMg01no055_b18.b1 PHD_FILE: MSMg01no055_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:26 2005CHROMAT_FILE: MSMg01no055_b18.g1 PHD_FILE: MSMg01no055_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAGGCTCACCCCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGC
CAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAG
GGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTT
GAAGTATTAGCCAGAGCAATTAGACAACAAAAGGAGATCGAGGGGATACA
AATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAG
TATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTGATA
AACAGCTTCAGTGAAGCAGCTGGATATAAAATAAACTCAAACAAGTCAAT
GGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAA
TAATACCCTTCTCAATAGTCACAAATAATATAAAATATCTCGGCGTGACT
CTAACAAAGGAAGTGAAAGATCTGTATGATAAAAATTTCAAATCTCTGAA
GAAAGAAATTAAGGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCAT
GGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATC
TACAGATTCAATGCAATCCCCATCAAACTTCCAACTCAATTCTTCAACGA
ATTAGAAGGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGGCATAAGATAAATGTGCAAAA
TTTTGGACATTTTAAGACTTAGAACATAAAAATCACAAAATCTTTCATTT
TACCTAAATTTGATTTGGGGCTTGTAGATGCAAAAGGAAATACTTAATTT
CAAATGAGGTGAATCCATTGAAAGCAGGTAGGATTAACTCATTATGGGCA
TAATAAATCCATCATATTGAGTGACAGGGTTTTAACACAGTAAAGCAGTG
TTACTTTCCTGGATGTGGTGCTGGTATTCAAACCCACATGTTGTTGTAAT
CGAGAACTTCATTCAAGCATATACCTTCTTAATGCTGCCTTCAGTGTGCT
TAGGGTGTGTTTAGTGTTTACACCCATAGCATCAATTCAGAAACAGATTT
CTCATGCTGTTAAAAATTGTGTGTATCTAAAATTTTATCAATCATTTTCT
TAATGTTGGTAGCATTTGTTATGAACAGAAACACACTTTTAAATAGTGCC
TGTCAGGGGCTAGAGAGATTAGTCAGCAGTTAGTGTAGAGGCACCAAGTT
CAGTTCCCACACCTATATCTAGAGCTCCAGAAGAATCCAACAGTTGTGAC
CTTTCAGACATAGGCATTCAAATGTACACACCCACAGAGGCACATAATAT
AAAATAAAAATTTAGAAGGCCCTCTGAGCATTTTCCATTATGTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_b18.g1 MSMg01no055_b18.g1 CHROMAT_FILE:
MSMg01no055_b18.g1 PHD_FILE: MSMg01no055_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:27 2005
         (614 letters)



>mm_chr18_7434595_7435608
          Length = 1014

 Score = 1133 bits (586), Expect = 0.0
 Identities = 607/614 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggcataagataaatgtgcaaaattttggacattttaagacttagaacataaaaatcac 60
           |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 814 ttggaataagataaatgtgcaaaattttggacatttcaagacttagaacataaaaatcac 755

                                                                       
Query: 61  aaaatctttcattttacctaaatttgatttggggcttgtagatgcaaaaggaaatactta 120
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 754 aaaatctttcattttacctaattttgatttggggcttgtagatgcaaaaggaaatattta 695

                                                                       
Query: 121 atttcaaatgaggtgaatccattgaaagcaggtaggattaactcattatgggcataataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 atttcaaatgaggtgaatccattgaaagcaggtaggattaactcattatgggcataataa 635

                                                                       
Query: 181 atccatcatattgagtgacagggttttaacacagtaaagcagtgttactttcctggatgt 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 634 atccatcatattgagtgacagagttttaacacagtaaagcagtgttactttcctggatgt 575

                                                                       
Query: 241 ggtgctggtattcaaacccacatgttgttgtaatcgagaacttcattcaagcatatacct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ggtgctggtattcaaacccacatgttgttgtaatcgagaacttcattcaagcatatacct 515

                                                                       
Query: 301 tcttaatgctgccttcagtgtgcttagggtgtgtttagtgtttacacccatagcatcaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tcttaatgctgccttcagtgtgcttagggtgtgtttagtgtttacacccatagcatcaat 455

                                                                       
Query: 361 tcagaaacagatttctcatgctgttaaaaattgtgtgtatctaaaattttatcaatcatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tcagaaacagatttctcatgctgttaaaaattgtgtgtatctaaaattttatcaatcatt 395

                                                                       
Query: 421 ttcttaatgttggtagcatttgttatgaacagaaacacacttttaaatagtgcctgtcag 480
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 394 ttcttaatgttggtagcatttgttatgaacagaaacacagttttaaatagtgcctgtcag 335

                                                                       
Query: 481 gggctagagagattagtcagcagttagtgtagaggcaccaagttcagttcccacacctat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gggctagagagattagtcagcagttagtgtagaggcaccaagttcagttcccacacctat 275

                                                                       
Query: 541 atctagagctccagaagaatccaacagttgtgacctttcagacataggcattcaaatgta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 atctagagctccagaagaatccaacagttgtgacctttcagacataggcattcaaatgta 215

                         
Query: 601 cacacccacagagg 614
           |||||||| |||||
Sbjct: 214 cacacccatagagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)