Query= MSMg01no056_a03.b1 MSMg01no056_a03.b1 CHROMAT_FILE:
MSMg01no056_a03.b1 PHD_FILE: MSMg01no056_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:33 2005
(446 letters)
>mm_chr18_49578753_49579596
Length = 844
Score = 812 bits (420), Expect = 0.0
Identities = 439/446 (98%), Gaps = 2/446 (0%)
Strand = Plus / Plus
Query: 1 aaaaggattctgtcaccaagagactcttagcttaagaaatttagagttgacatttctcgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaggattctgtcaccaagagactcttagcttaagaaatttagagttgacatttctcgg 260
Query: 61 cgggtttctgaagacaatgtaattccactaataagtcagccattaggcagaacactgaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgggtttctgaagacaatgtaattccactaataagtcagccattaggcagaacactgaag 320
Query: 121 cagacaaactaggcttcaataatactgacccttttaatattattatgtgcaccaaatcat 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 cagacaaactaggcttcaataatactgacccttttaatattattgtgtgcaccaaatcat 380
Query: 181 gaccagactcaacagtggtcagcctttcaagaggggaaggaggaagggagaatctgcagc 240
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaccagactcaacagcagtcagcctttcaagaggggaaggaggaagggagaatctgcagc 440
Query: 241 tgctataacaacacaaggccattcggttacttttaattctgttgatcagaaggtgagtgt 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 tgctataacaacacaaggccattcggttacttttaattctgttaatcagaaggtgagtgt 500
Query: 301 aggtctccctgggtgaaatctgaggtgcaatcaggattaatcttctttctttaggttcta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggtctccctgggtgaaatctgaggtgcaatcaggattaatcttctttctttaggttcta 560
Query: 361 gaaaatactgctcagctcaaagtcacactccctgttttcaaaaccaacagtatatctcct 420
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 gaaaatactgctcggctcaaagtcac--tccctgttttcaaaaccaacagtatatctcct 618
Query: 421 tagccattcttctacaataatatctc 446
||||||||||||||||||||||||||
Sbjct: 619 tagccattcttctacaataatatctc 644
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 844
Length adjustment: 10
Effective length of query: 436
Effective length of database: 834
Effective search space: 363624
Effective search space used: 363624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no056_a03.g1 MSMg01no056_a03.g1 CHROMAT_FILE:
MSMg01no056_a03.g1 PHD_FILE: MSMg01no056_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:33 2005
(480 letters)
>mm_chr18_49735725_49736604
Length = 880
Score = 816 bits (422), Expect = 0.0
Identities = 466/484 (96%), Gaps = 8/484 (1%)
Strand = Plus / Minus
Query: 1 attatctaactctacagaaagaaaactgcctcagagttgtatttgcatg---ccccaggg 57
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 680 attatctaactctacagaaagaaaactgcctcagagttgtatttgcatgtaa----aggg 625
Query: 58 tgagtgcccacatgtgcagctagagtggccgaggtcacagaagaaacaaaggatacaggg 117
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgagtgcccatatgtgcagctagagtggccgaggtcacagaagaaacaaaggatacaggg 565
Query: 118 aacagcgtttcaagtgttctctgcttgacagcctcctacttcttcc-ttttttctgggtc 176
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 564 aacagcgtttcaagtggtctctgcttgacagcctcctacttcttcctttttttctgggtc 505
Query: 177 agagtggcttcggggacacagtgctcaatgggctgagagagaggcttatggagctctttg 236
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 504 agagtggcttcggggacacagtgctcaatgggctgagagagaggcttatggagttctttg 445
Query: 237 cttacacaaactcacttgcataagtcctggttgtttagctacaggaagcgtagtgtcatc 296
||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cttacacaaacaaacttgcgtaagtcctggttgtttagctacaggaagcgtagtgtcatc 385
Query: 297 tttgatctcttcctgcttcagagaggcatacgctaatatcagcctgaaggggtatgtcct 356
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 384 tttgatctcttcctgcttcagagaggcatacgctaatatcaacctgaaggggtatgtcct 325
Query: 357 cttagggccatttcctatttcatggcattcctctcaggatgtggaaaaggatcagacttg 416
|||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 324 cttaaggccatttcctattccatggcattcctctcagtatgtggaaaaggatcagacttg 265
Query: 417 agacttgaattcttcaccgagtgatttggtttcactttatataactgcagcttgctgaat 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agacttgaattcttcaccgagtgatttggtttcactttatataactgcagcttgctgaat 205
Query: 477 ccac 480
||||
Sbjct: 204 ccac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
