BAC Information

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BAC

Clone NameMSMg01-056B01
Chromosome18 (Build37)
Map Location 43,705,342 - 43,705,868
singlet/doubletsinglet
Overlap geneJakmip2
Upstream geneTcerg1, Gpr151, LOC100042037, Ppp2r2b, LOC100042046, LOC100042051, EG666594, Stk32a, Dpysl3, LOC100042074, LOC100042807
Downstream geneSpink3, Scgb3a2, Gm94, Spink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056B01.T7 (MSMg01no056_b01.b1)MSMg01-056B01.TJ (MSMg01no056_b01.g1)
ACCAG283566AG283567
length695757
length of high quality
(start - end)
539 (43 - 581)34 (87 - 120)
definitionCHROMAT_FILE: MSMg01no056_b01.b1 PHD_FILE: MSMg01no056_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:37 2005CHROMAT_FILE: MSMg01no056_b01.g1 PHD_FILE: MSMg01no056_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACCGCCATCATAATTTGCGGCGCTAAACGACTCCTATATTCAGAGGATCC
GCGGAATTCTTTTGAATTTCGCTCCTCGGACAGCACCCTACTGCTGATCG
CTGGTCAAGTTCCAACACAAATGATGAATTACAAAGATGCTTGGTGGCAA
GTTGCTAATAAGTGCCTGTTAGATGGATGGCTTGCCTGTTAGATGGATCA
CACAACTCACAAATGCCTTAAGCTGCGCACGAGAACCTTGTGCTTTGGTT
AGCACCTATGTCTTAGGGGCTGGCATACTTGGACCATAATTTTGCTCTGC
AATTTACTATTTTGAATAAATCATTTGAATACGTTGCCTCCCAAACTGGG
ATAATAAGAACACTTATGTCTTAGAGCTCCCAGGAAGACGAGGTGAGATG
ATGCGCAGCCTTTACATGCTTTTTTTAAAAAAATCATGTGATTGTATAAA
TTATTTATTGTAATATATTTAAATATTTATAATAACACATTTTTGATCAT
TTTTAATGAGACCATTTAAAAGGAAAAAAAACCTTTAAATTGCCGTCAGT
AACAAAAAGATACTACCTCAATAAATCTGAACACACACCAAGTAATAACT
GAACACACACATATACTTAAACATTCACTTGTATTCTTACATTCTTAGCA
ATCTATTTTTATATGTATGGGTGCTTTGCCCGAATGCATGTCTAT
TTTTCCCATGCTGNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCGCCAATTCTCAGTTTGGTTCTATACCCCA
TTTTTTGAGAGAGAAGAAAGCAATCTTACGTGGGGAAGGAGGGCAGGAGG
TAGGGAAGGAGGAGGGGACCTGGGAGGGAAAGTGGACGGATTGTGGGGCG
AGTGTTACNNTTTTCCTCCTCCCCTNTTTTCCTCCCCTCCTCCCCCCCTT
TCTTCCCCTTCCTTCTTCTCCCTTCTCTCCCGTCCCCCTCCTCCCTTTCC
CTCCTTCTTCTTCCTCTTTCCTCTTCCCTCTTCTCTTCCTTCTCCTCTCT
TCCTTTCTTCCTTCCTCTCCTTTCCTCCTCCCCTCCTCTCTCCCCTTCCT
TTTCTTCTTTCTTCCCCCTCTTCCTCTCTTTCTCCTTTTCCCTTTTTCTT
TCTTCTCCCCTTTTCCTCTCTCTTTTTTTTCCTTTCTTCTCCTTTCTTTT
CTTTTCCCTCTCCTCCTCCCTTCCTTCCTTCCTCTTTCCTCTTCCCCCCC
TTCTCCCCCCCCTCTCCCCCCTTCCCTTTCCCTCCCTCTTTCCTCTTCTC
CCTCTTCTCTCTTTCCTTCTTCCCCCCTCCTTCTCTCCCTCTCTCTCCCC
CTCCCTCTCCTTTTCTTTCTTCCCCTCTTCTTTCTCTTTTTTCTTTTTTT
CTTCCTTCTCTCTTTCTCCTCTTTTCCTCCCCTTATTCTCCTCTCCCCCC
TCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_b01.b1 MSMg01no056_b01.b1 CHROMAT_FILE:
MSMg01no056_b01.b1 PHD_FILE: MSMg01no056_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:37 2005
         (539 letters)



>mm_chr18_43705132_43706068
          Length = 937

 Score =  930 bits (481), Expect = 0.0
 Identities = 517/529 (97%), Gaps = 2/529 (0%)
 Strand = Plus / Plus

                                                                       
Query: 11  ggaattcttttgaatttcgctcctcggacagcaccctactgctgatcgctggtcaagttc 70
           ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 211 ggaattcttttgaattt-gctcctcagacagcaccctactgctgatcgctggtcaagttc 269

                                                                       
Query: 71  caacacaaatgatgaattacaaagatgcttggtggcaagttgctaataagtgcctgttag 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 caacacaaatgatgaattacaaagatgcttggtggcaagttgctaataagtgcctgttag 329

                                                                       
Query: 131 atggatggcttgcctgttagatggatcacacaactcacaaatgccttaagctgcgcacga 190
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||
Sbjct: 330 atggatggcttgcctgttagatggatcacacaattcacaaatgcctgaagctgcgcatga 389

                                                                       
Query: 191 gaaccttgtgctttggttagcacctatgtcttaggggctggcatacttggaccataattt 250
           || |||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||
Sbjct: 390 gagccttgtgctttggttagcacctatatcttaggggctggcatacttggactgtaattt 449

                                                                       
Query: 251 tgctctgcaatttactattttgaataaatcatttgaatacgttgcctcccaaactgggat 310
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 450 tgctctgcaatttactattttgaataaatcatttgaatacgttgcctctcaaactgggat 509

                                                                       
Query: 311 aataagaacacttatgtcttagagctcccaggaagacgaggtgagatgatgcgcagcctt 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aataagaacacttatgtcttagagctcccaggaagacgaggtgagatgatgcgcagcctt 569

                                                                       
Query: 371 tacatgctttttttaaaaaaatcatgtgattgtataaattatttattgtaatatatttaa 430
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tacatgctttttt-aaaaaaatcatgtgattgtataaattatttattgtaatatatttaa 628

                                                                       
Query: 431 atatttataataacacatttttgatcatttttaatgagaccatttaaaaggaaaaaaaac 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 atatttataataacacatttttgatcatttttaatgagaccatttaaaaggaaaaaaaac 688

                                                            
Query: 491 ctttaaattgccgtcagtaacaaaaagatactacctcaataaatctgaa 539
           ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 689 ctttaaattgccgtcagtaacaaaaagatactacctcaatacatctgaa 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 937
Length adjustment: 10
Effective length of query: 529
Effective length of database: 927
Effective search space:   490383
Effective search space used:   490383
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)