BAC Information

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BAC

Clone NameMSMg01-056E01
Chromosome18 (Build37)
Map Location 25,185,649 - 25,185,870
singlet/doubletsinglet
Overlap geneFhod3
Upstream geneD030070L09Rik, Galnt1, LOC665586, 2700062C07Rik, BC021395, Slc39a6, Epl2, Mocos
Downstream gene5730494M16Rik, AW554918, Brunol4, LOC100041241, LOC665916, LOC100041263, LOC100041274
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056E01.T7 (MSMg01no056_e01.b1)MSMg01-056E01.TJ (MSMg01no056_e01.g1)
ACCAG283706AG283707
length712744
length of high quality
(start - end)
401 (70 - 470)213 (74 - 286)
definitionCHROMAT_FILE: MSMg01no056_e01.b1 PHD_FILE: MSMg01no056_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:52 2005CHROMAT_FILE: MSMg01no056_e01.g1 PHD_FILE: MSMg01no056_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGGA
ATTCTCAACTGTTTCATACCAAATGGCTGAGAAGCACCTAAAGAAATGTT
CAACATCCTTAGTCATCAGGGAAACACATATCAAAACAACCCTGAGATTC
CATCTCACACCAGTCAGAATGGCTAAAAGAAAAAAAAAAACTCAGGTGAC
AGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTTCTCCATTGCTG
GTGGGATTGCAAGCTGGTACAACCACTTTGGAAATCAGTTTGGTGGTTTC
TCAGAAAATTGGACATAGTACTACCTGAGGACCCAGCAATACCACTCCTG
GGCATATACTCAGATGTTCCAACATGCAATAAGGACACATGCCCCACTGT
GTTCACAGCAGCCTTATTTATAATAACCAGAAGCTGGAAAGAACCCAGAT
ATCCTTCAATAAAGGAATGGATACCGAAAATGTGGCACATTTACCCAATG
GAGTACTATTCAGCTATTATAAATGATGAATTCATGAAATTCTTAGGCAT
ATGAATAGAACTAGAAGATATCATCCTGAGTGAACTACCCCTATTGCAAA
CTAATATACATGGTATGCACTCCCCTGACAAATGCATATTACCCCAAAAG
CTCACAATACCCAGATACAATTCCCACATCCCATGTAACTCCAGAAGGAA
TACCAACCTGTG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGCCTCTGCTTCTTATGCCCAAGAAGAT
CTGTGTGTGTTCATCGTAGCGAGCCTCGGGAGTCCCTCAAATCCTAATGC
CTCATCCCTGAGTGTAAGGAGTGAGTTATCCTTGCCTGTGACAAGACACG
TCGGGATCGAAGCTGTTTTACATGAATGTCAGATCTATAGAAGGGTTCAG
ATTGTGATTTGTTTCCTGGGCGTTGCCTTGAGTGGTAGCACCTGCATCGA
AGAAACTGCTGAAAGACATCTTTCCTGAGAACAGATAGCTACAAATCTTG
ACATCTGACTAATAGAGATGGCTAGGAAAAGATCAAAATTCATTTTAGTC
TAACCACTGCAGGTTTCAGGATAAATGGTTGAATGAAACTATGGTTTCCT
TCATGTCTAGGCAGTAGGCTAACCCCAGAGGCCTGGAGGTACACGAGCAC
CCCCATGGGATGATGGGAAAAGAACATGATAGTTTCAAAATGACCTGTGG
CACAATTTTCAGTGCCAAGATGTTTCTTTAGTCTAAGCGAATGTTTTTGT
TCTGCCGGTTTTTTGAGTGGCTTTTCTGTAGGCGCCCTCCCCATTTATCC
ACGGGAATACTCCTTCATTGGTTTCACTCTTGATTAATAGTTTTGGGCGC
CTTCTAAAATTTTTTAGTTTCCTCATATCAATCTTTTAATATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_e01.g1 MSMg01no056_e01.g1 CHROMAT_FILE:
MSMg01no056_e01.g1 PHD_FILE: MSMg01no056_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:52 2005
         (213 letters)



>mm_chr18_25185458_25186070
          Length = 613

 Score =  360 bits (186), Expect = e-104
 Identities = 209/222 (94%), Gaps = 9/222 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcctctgcttcttatgcccaagaagatctgtgtgtgttcatcgtagcgagcctcgggagt 60
           |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 192 gcctctgcttcttatgcccaagaagatctgtgtgtgttcatcatagtgagcctcgggagt 251

                                                                       
Query: 61  ccctcaaatcctaatgcctcatccctgagtgtaaggagtg---------agttatccttg 111
           |||||||||||||||||| |||||||||||||||||||||         |||||||||||
Sbjct: 252 ccctcaaatcctaatgccacatccctgagtgtaaggagtgtaaggagtgagttatccttg 311

                                                                       
Query: 112 cctgtgacaagacacgtcgggatcgaagctgttttacatgaatgtcagatctatagaagg 171
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 312 cctgtgacaagacacgtcgggatcggagctgttttacatgaatgtcagatctatagaagg 371

                                                     
Query: 172 gttcagattgtgatttgtttcctgggcgttgccttgagtggt 213
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gttcagattgtgatttgtttcctgggcgttgccttgagtggt 413


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 613
Length adjustment: 9
Effective length of query: 204
Effective length of database: 604
Effective search space:   123216
Effective search space used:   123216
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)