BAC Information

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BAC

Clone NameMSMg01-056G17
Chromosome18 (Build37)
Map Location 6,007,680 - 6,007,973
singlet/doubletsinglet
Overlap genenone
Upstream geneSvil, Zfp438, LOC100039442, Zeb1, EG664925
Downstream geneArhgap12, Kif5b, LOC100039469, EG621100, LOC665028, EG622152, Epc1, LOC665047, 4921524L21Rik, LOC100039583, EG665053, Rab18, LOC620787, LOC100039635, Mkx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056G17.T7 (MSMg01no056_g17.b1)MSMg01-056G17.TJ (MSMg01no056_g17.g1)
ACCAG283834AG283835
length694733
length of high quality
(start - end)
554 (77 - 630)294 (73 - 366)
definitionCHROMAT_FILE: MSMg01no056_g17.b1 PHD_FILE: MSMg01no056_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:04 2005CHROMAT_FILE: MSMg01no056_g17.g1 PHD_FILE: MSMg01no056_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCG
CGGAATTCAAGGCCTTTCCCTAAACATGATAAAAGCAATCTACAGCAAAC
CAGTAGCCAACATCAAAGTAAATGCAGAGAAGCTGGAAGCAATCCCACTA
AAATCAGGGATTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACAT
AGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGG
GGATACAAATTGGAAAGGAGGAAATCAAAATATCACTTTTTGCAGATGAT
ATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAA
CCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATTAACTCAAACA
AGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATT
AGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAGTATCTCGG
CGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGT
CTCTGAAGAAAGAAATTAAAGAAGATATCAGAAGATGGAAAGATCTCCCA
TGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAA
AGCAATCTACAGATTTAATACAATCCCCATCTAAATTCCAACTG
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTTCAGCGAAATTCAATAAGGAATGGTAAATTACCTGT
CAGATTGATTTGTCTGCTCTGCTCATTATCTTTGGTGTCCTGATGGCCAT
TGAGAGATGTAGTTTCTAGCCGTAGCTTTGCCATGAACTAGTGACAATAG
TGATTTCTAGAAAGTCAGCCCCCTGCAGCCCCCTGCACAAGCCTGTAAGC
ATCAGCAATGAAGAGGGTGAGTTAGGAGGAGCCTGCCCATGAGCCACTGG
GGGCTACACTTTCAACCTTTTCCTGAAAACAAAACCAAGTAAACAAAGAA
AGAGGAGGAAGATGAGAGGAGTACAGATCCAGAGAGGACAGAGAGGATGA
GGGAGGTAGTGGGAGATAGGAGGTGAAGGCTATTTCTTTTTTCAATTGAT
CCTTTATTCTCTCTCTTCTTTCTCCCTATCTTTCTCCATTTCTTCTCTTA
TTTTTTTATTTTCACTTAATAATTTATTTCTCCCTATTCTATATTTCCTT
TCGTCCCCCCGTTCTTCTCTCTCTTTCTCTTACTTTCCTTTTCTCCTTTT
TATAATTTATTTCTTTTACTTATTTCCCCCACACCCCTCTATTTCATTCT
ATTCATAAATAACCATCTTATATCTATATTAATCATTTTAACCCTCCTAC
CTATATCACACCCCCCCTCCCTTCCCTTATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_g17.g1 MSMg01no056_g17.g1 CHROMAT_FILE:
MSMg01no056_g17.g1 PHD_FILE: MSMg01no056_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:05 2005
         (294 letters)



>mm_chr18_6007480_6008173
          Length = 694

 Score =  538 bits (278), Expect = e-157
 Identities = 290/294 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcaataaggaatggtaaattacctgtcagattgatttgtctgctctgctcattatctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 attcaataaggaatggtaaattacctgtcagattgatttgtctgctctgctcattatctt 435

                                                                       
Query: 61  tggtgtcctgatggccattgagagatgtagtttctagccgtagctttgccatgaactagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tggtgtcctgatggccattgagagatgtagtttctagccgtagctttgccatgaactagt 375

                                                                       
Query: 121 gacaatagtgatttctagaaagtcagccccctgcagccccctgcacaagcctgtaagcat 180
           |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 374 gacaatagtgatatctagaaagtcagccccctgcagcctcctgcacaagcctgtaagcat 315

                                                                       
Query: 181 cagcaatgaagagggtgagttaggaggagcctgcccatgagccactgggggctacacttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 314 cagcaatgaagagggtgagttaggaggagcctgcccatgagccactgtgggctacacttt 255

                                                                 
Query: 241 caaccttttcctgaaaacaaaaccaagtaaacaaagaaagaggaggaagatgag 294
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 caacctttccctgaaaacaaaaccaagtaaacaaagaaagaggaggaagatgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)