BAC Information

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BAC

Clone NameMSMg01-056M16
Chromosome18 (Build37)
Map Location 29,708,274 - 29,708,538
singlet/doubletsinglet
Overlap genenone
Upstream geneBC051408, LOC100040930, 4930578E11Rik
Downstream geneLOC666073, Pik3c3, LOC666094, LOC666100, EG666111, EG666114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056M16.T7 (MSMg01no056_m16.b1)MSMg01-056M16.TJ (MSMg01no056_m16.g1)
ACCAG284110AG284111
length688716
length of high quality
(start - end)		639 (36 - 674)268 (75 - 342)
definitionCHROMAT_FILE: MSMg01no056_m16.b1 PHD_FILE: MSMg01no056_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:32 2005CHROMAT_FILE: MSMg01no056_m16.g1 PHD_FILE: MSMg01no056_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAACTT
TCCTTGTCTTTTCATATTTTTTTAATATTTTTTATTACATATTTTCCTCA
ATTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCTCCCCCCAACT
TCCCTACCCACCCATTCCATTTTTTGGCCCTGGTGTTCCCCTGTACTGGG
GCATATAAAGTTTTCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGA
CTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCTGGGGTA
CTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAG
CTCCTTGGGCACTTTTCTAGCTCCTCCATTGGGAGCCCTGTGATCCATCC
AATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAG
TCTCACAAGAGACAGCTACATCTGGGTCCTTTCGATAAAATCTTGCTAGT
GTATGCAATGGTGTCAGCGTTTGGAAGCTGATTATGGGGTGGATCTCTGG
ATATGGCAGTCTCTAGATGGTCCATCCTTTTGTCTCAGCTCCAAACTTTG
TCTTTGTAACTCTTCCATGGGTGTTTTGTTTCCAATTCTAAGGAGGGGCA
TAGTGGATGGCCTTTCTCTACCAAAGAATAAACAGGCT

NNTCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTGCAACAGAGGAATTCCAGTGTTCCCAGTGACTTTTA
GTGTCAGTGGGGCAAACTTCCTGAAACAAACAACTTAAAAGAAGACTTGT
TGATTTGGCTGAATACTTTGAGAGAGTTTATTCCTCTTTGGTAGGAAGGC
ATGCAGCATTTGAGGCTAAGAGCACAGGCCACTTATAATAATGTTAACAA
AAAATAGTAGGCTCTCTGGTACCTCCTGTTTTTAAAAACACTTATAGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTNNNNNNNNNNNN
NNNNNNNTTTTTTTTCCCCCCCCCCCCCCCCTTTTTTTTCTTTTTTCTTT
TTTTTTTTTCCTTTTTTTCTTTCCCATTACCTTTTCTCCCTCTTCCCCCT
TTTTTTCTCTCTCTTTTTCTTTTTTTTTTTTTTCCCTTCTTTCTCCTTCC
TCTTCTCCCCCTCCCCTCTCTCTTTTTCTTCCTTTTCTTTTCTTTTTTTC
TCCCTTTTCTCCTCTTTTCTCCCTTTTCTTTCCCTTCTTTTCCTCCTCCC
CCTCTCTCTTTTCTTTTTCCCTTTCCTTCTTCCTCCCTTCCCCCCCCTCC
CCTTTTCTTTTCTTTTTTTTTCCCCCCTCCCTTTTTTCCCTCTTCTTTTC
CCCCCTTTCCCTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_m16.g1 MSMg01no056_m16.g1 CHROMAT_FILE:
MSMg01no056_m16.g1 PHD_FILE: MSMg01no056_m16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:32 2005
         (268 letters)



>mm_chr18_29708117_29708784
          Length = 668

 Score =  466 bits (241), Expect = e-136
 Identities = 260/267 (97%), Gaps = 5/267 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattccagtgttcccagtgacttttagtgtcagtggggcaaacttcctgaaacaaacaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aattccagtgttcccagtgacttttagtgtcagtggggcaaacttcctgaaacaaacaac 363

                                                                       
Query: 61  ttaaaagaagacttgttgatttggctgaatactttgagagagtttattcctctttggtag 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  
Sbjct: 362 ttaaaagaagacttgttgatttggctgaatac-ttgagagagtttattcctctttggt-c 305

                                                                       
Query: 121 gaaggcatgcagcatttgaggctaagagcacaggccacttataataatgttaacaaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gaaggcatgcagcatttgaggctaagagcacaggccacttataataatgttaacaaaaaa 245

                                                                       
Query: 181 tagtaggctctctgg--tacctcctgtttttaaaaacacttatagtgtgtgtgtgtgtgt 238
            ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gagtaggctctctgggctacctcctgtttttaaaaacacttatagtgtgtgtgtgtgtgt 185

                                      
Query: 239 gtgtgtgtgtgtgtgtg-tgtgtgtgt 264
           ||||||||||||||||| |||||||||
Sbjct: 184 gtgtgtgtgtgtgtgtgttgtgtgtgt 158


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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