BAC Information

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BAC

Clone NameMSMg01-057I04
Chromosome18 (Build37)
Map Location 3,358,414 - 3,358,773
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664794, Crem, EG621440
Downstream geneCul2, EG621501, Bambi, LOC100039273, LOC435549, EG664867, LOC621666, Lyzl1, LOC383374, LOC664909, Map3k8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057I04.T7 (MSMg01no057_i04.b1)MSMg01-057I04.TJ (MSMg01no057_i04.g1)
ACCAG284649AG284650
length772750
length of high quality
(start - end)
363 (112 - 474)---
definitionCHROMAT_FILE: MSMg01no057_i04.b1 PHD_FILE: MSMg01no057_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:29 2005CHROMAT_FILE: MSMg01no057_i04.g1 PHD_FILE: MSMg01no057_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTTTTTTNNNNNTNNTNNNNTTTTTTTTTNTCTTCCCTTNNCCT
CTCCCTTATTTAACTTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXGCCGCGGAATTCACTCTGTGTCCCTCAAACTCAGAGGTCTG
CCTAACTCTGGCTTCTGGAATTAAAAGCTGTGCCACCACCACCAAACTTC
ATTTAAAAATTTTTAGTACAATAAAAAGAGAATCTCCCAGGGAATACACA
GGAAATTACACTGGTGAATACTAGTGACACTTTAGCTCCATCTATTATGG
ACTCATGTCCTAAGAGGCAATCTGTGCCCATGGTTTTATCTCTCTCTCTG
TTAAATTTTACATTTTCCTCACCAAGCAACTATAGTAGTTCATCAAAGCA
GTGGCTTTGGATAGGTATGCCAGGACAGATGATCCTGAAGACCCAAGTTC
AGCAACTAGATCTTCACTGAGGAAGTTGCCAGTGCGAACATAAGTTGGAG
TAAGAATGTGCCTACCTGTATTGAGGTCAGACGCCATGATTCACAAAGAG
TTGTTTACTTGATGGGAGCCCCTTTCTATCATGACACTGACAGTCAGTCT
TGCCACCCTCTGTCCAGGGCCCTATAGCCTAGGTGGCACAAACCTCTGTA
CCAACCTAATCATCCCCTTCCTTTGAGTCCAGAACTATGGTTTCCAGTAA
CCGTGGAAGAAGCACTCCCCTGAACTTAAGGCTCAACCAACCTTTTTTAA
GCAAGCGGCAATTCTTTTAAAT
GTTTGTTTTTTTTTTTTGCCNTTTGTGTCCCCTTTCCTCGCTTTATTGGG
GAAAACGAACACNGCAAACAGCGATCAGAGGAGGGNGAANANANTTTTTC
CAAAAAGGGTGTGAGATAATATTTGTTTCTCGTCCAGAGTGGCGGTGACT
GGGTTGTTTTGTTTTGGGGGTGGGGGGGGGGTGGGCGGGGTGGGTTTTTT
GGTTTTTTTTAAGCCTTTAAGTCCGCTTTGCGACGCGTTTTTTTGTTTTG
ACGATCTCAACATTACCCATAGTGTCCTCCAGGTCCGTGTGCGTGTTTTA
TTTAGTGTGTCTATTACGCTTACCATGCACGCGCTATTATACTTAACTTG
TCCTTTGACTTCTACTTTATTCCGGGAATTATAGTAACCAATACAGACAA
ACAACAAATATATATTAAGCTATTTTATCCAACAGGGAAAAAGAAAGATT
AGGATAGAAAAAGGGATGATAGGGAATAAAACGATAGATAGAGAAGTTAA
ACAAAGACCAAAAATAAAAAATAAAGAATAAGCGAATACACCGAATGACC
AAGAACCGCAACGGAACATCCGCATGCAGAATATGAAATATAGACATAAA
GGGCGAGTAGGTAGCGGAGGGGGGGGAGAGGGGTGAGAGGGCGAGATGTA
AGGAAGACAAAGAACGTTTAAAAAATAGTACTAGAAGATGGAAGGCAGGC
AGACGAGGATAGTCAGCAGTATGTATTAAGCCCCGGCAGTTTGTTTTAAC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_i04.b1 MSMg01no057_i04.b1 CHROMAT_FILE:
MSMg01no057_i04.b1 PHD_FILE: MSMg01no057_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:29 2005
         (363 letters)



>mm_chr18_3358211_3358973
          Length = 763

 Score =  665 bits (344), Expect = 0.0
 Identities = 356/360 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactctgtgtccctcaaactcagaggtctgcctaactctggcttctggaattaa 63
           |||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactctgtggacatcaaactcagaggtctgcctaactctggcttctggaattaa 263

                                                                       
Query: 64  aagctgtgccaccaccaccaaacttcatttaaaaatttttagtacaataaaaagagaatc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aagctgtgccaccaccaccaaacttcatttaaaaatttttagtacaataaaaagagaatc 323

                                                                       
Query: 124 tcccagggaatacacaggaaattacactggtgaatactagtgacactttagctccatcta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcccagggaatacacaggaaattacactggtgaatactagtgacactttagctccatcta 383

                                                                       
Query: 184 ttatggactcatgtcctaagaggcaatctgtgcccatggttttatctctctctctgttaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttatggactcatgtcctaagaggcaatctgtgcccatggttttatctctctctctgttaa 443

                                                                       
Query: 244 attttacattttcctcaccaagcaactatagtagttcatcaaagcagtggctttggatag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 attttacattttcctcaccaagcaactatagtagttcatcaaagcagtggctttggatag 503

                                                                       
Query: 304 gtatgccaggacagatgatcctgaagacccaagttcagcaactagatcttcactgaggaa 363
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtatgccaggagagatgatcctgaagacccaagttcagcaactagatcttcactgaggaa 563


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space:   266916
Effective search space used:   266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)