Query= MSMg01no057_i17.b1 MSMg01no057_i17.b1 CHROMAT_FILE:
MSMg01no057_i17.b1 PHD_FILE: MSMg01no057_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:31 2005
(437 letters)
>mm_chr18_49981961_49982798
Length = 838
Score = 704 bits (364), Expect = 0.0
Identities = 418/436 (95%), Gaps = 1/436 (0%)
Strand = Plus / Minus
Query: 3 ggaattctgtcggttctcccagtgcaaacctggctgatagtcaccgtgtcaagagttcag 62
|||||||| || || || ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ggaattctatcagtacttccaatgcaaacctggctgatagtcaccgtgtcaagagttcag 579
Query: 63 ccacaggaggggaagtaggtttcacagggaagagggtaaagaaagcggatcagggagaac 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ccacaggaggggaagtaggtttcacagggaagagggtaaagaaagcggatcagggagaac 519
Query: 123 caagcactaaatgtagtgacactcctgtggtgtgagttagtgaagagatgtgactacctg 182
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 518 caagaactaaatgtagtgacactcctgtggtgtgagttagtgaggagatgtgactacctg 459
Query: 183 attctgttgggttaatgt-ggggcctgtaggagattgtaagaaacattttgcttgtccat 241
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 attctgttgggttaatgtgggggcctgtaggagattgtaagaaacattttgcttgtccat 399
Query: 242 tgctaaaagaagcaggatggtaccccaggtgatacaaattattaaaattcaagaggagag 301
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 398 tgctaaaagaagcaggatggtaccccaggtaatacaaagaattaaaattcaagaggagct 339
Query: 302 cattggatttaggactttaggacgtccttagtgaattcactctttttgggtagagggtat 361
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 338 cattggatttaggactttaggaagtccttagtgaagtcactctttttgggtagagggtat 279
Query: 362 ggatgttattaccacataaggacattgtgttcgttacttttcttattaattgaaggagga 421
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ggatgttattagaagataaggacattgtgttcgttacttttcttattaattgaaggagga 219
Query: 422 agggtttattttggct 437
||||||||||||||||
Sbjct: 218 agggtttattttggct 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 838
Length adjustment: 9
Effective length of query: 428
Effective length of database: 829
Effective search space: 354812
Effective search space used: 354812
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no057_i17.g1 MSMg01no057_i17.g1 CHROMAT_FILE:
MSMg01no057_i17.g1 PHD_FILE: MSMg01no057_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:31 2005
(479 letters)
>mm_chr18_49857099_49857979
Length = 881
Score = 857 bits (443), Expect = 0.0
Identities = 468/479 (97%), Gaps = 7/479 (1%)
Strand = Plus / Plus
Query: 1 agatgctaacagaagacgtgagtcacattagctgagtccgagtacaactgtaaacagtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatgctaacagaagacgtgagtcacattagctgagtccgagtacaactgtaaacagtaa 260
Query: 61 cgtctccctattcccttacactacttaatgacataaactgccctctgtgtcacttacttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgtctccctattcccttacactacttaatgacataaactgccctctgtgtcacttacttc 320
Query: 121 acacttataatttcattcactaggctgaaacattagtttcacggggtatattccatcagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacttataatttcattcactaggctgaaacattagtttcacggggtatattccatcagt 380
Query: 181 gatctacacctacatacctataaacactgatgggaacatgttcccagacacaattttcct 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 gatctacacctacatacctataaacactgacgggaacatgttcccagacacaattttcct 440
Query: 241 cattttacaaactacagctccttactctagactaatcgtattttgaatagattctttacc 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattttacaaacaacagctccttactctagactaatcgtattttgaatagattcttta-- 498
Query: 301 aaaaaaaaaa----gtattggaagcgcatgtttaaaagcaaatacagaacctagacagag 356
|||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 499 aaaaaaaaaaaaaagtattggaagcacatgtttaaaagcaaatacagaagctagacagag 558
Query: 357 gtggggcatgcttttcagcccagaacttgggaggcagaagcagccagatctctgagtttg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gtggggcatgcttttcagcccagaacttgggaggcagaagcagccagatctctgagtttg 618
Query: 417 aggccagcctggtctacaggctacacagagaaaccttgtattgaaaaaaacaaaaacaa 475
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 619 aggccagcctggtctacaggctacacagagaaaccttgtattgaaaaaa-caaaaacaa 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 881
Length adjustment: 10
Effective length of query: 469
Effective length of database: 871
Effective search space: 408499
Effective search space used: 408499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
