BAC Information

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BAC

Clone NameMSMg01-057J23
Chromosome18 (Build37)
Map Location 32,648,300 - 32,648,744
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3, Bin1
Downstream geneGypc, LOC100041160, LOC100041170, Tslp, Wdr36, Camk4, Stard4, EG433170, D0H4S114, ENSMUSG00000073610
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057J23.T7 (MSMg01no057_j23.b1)MSMg01-057J23.TJ (MSMg01no057_j23.g1)
ACCAG284734AG284735
length714717
length of high quality
(start - end)
367 (36 - 402)444 (65 - 508)
definitionCHROMAT_FILE: MSMg01no057_j23.b1 PHD_FILE: MSMg01no057_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:38 2005CHROMAT_FILE: MSMg01no057_j23.g1 PHD_FILE: MSMg01no057_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGGCGCTATACGACTCCTATTTCCAGAAAGGCGCGGAATTCCTTCTCT
TCACAAGCTCTTGGCTAATAGTTATGCAGCTGGTCCATAGACTTCCTGTG
CTGACTGGTTTAATGTCAGTCTGACACCAGATAGGGTCATTTGGAAAGAG
GGAACCTCAACTGAGGAAATGCTCCCACCACATTGGCAACGCTGTAGGAT
TTTCTGATTGGTGATTGGTGTGGGAGGTCCCAGCTCCCTGTGGGTGGCAT
TACCCCTGAGCAAGTAGTCCCAGATGCTATAAGAAAGCAGGCTGAGCAAG
CCTCGAGGAACATGCCAATAAGCAGCACTCCTTCATGGCTTCTGCTTTAG
TTCCTGCCTTGAGTTCTTACCCTGACTTTCTTCAGTGATGGACTGTGGTG
TGGAACTATAGTTGAAATAAGTCCAACCCTAAGTTGGTTTTGGTTATGGT
ATTGTATTGCAACATTAAAAACTCTGAGATACCTCCCTTTGATTAGCAAA
CCTGTGTGTGTGCGCGCACCCCCCCCCCCGCCACATGAATGTGTATGTAT
GTGCTTGGGTGTATGTGTATATGTGCATGTAGGCCCACACCAATATTTTT
TCAGCTGCCTTCCATCTGATTTGCTTAGTCAGGGTGACTCGCTGATTCTG
CTATGCCAGCTCTCCAGCTGGCCAGCAGACTCCAGGAATCCATTGTCCCT
GCCTCCCAGTGTTG
GTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGGATAGCCGTGAGCTACTTGCTGTGGGTGCTGGGA
ACTGAAACTGGGTCAACTACTTCTGACCTCTGAGCTATCCCTCCAGTGCC
TGGCTTTGCAGGATCCTGATTGGTTTTCCTTGTGATTCCAGGACCATCTG
GTAGCAATTGTCACCAAAACAACAGCTCCCCACTACTTCCACGTGCACTA
TTTATATATAACGTGAGAAAAGGGATGGAGGTAGAGGCTGTCTGATTGGT
GACAGCTGTTTGTTTTGAACATGATTTCATGAACGTGTTTGGCTGAGGCA
TCCTATTTTCTGCGCAGTTTGTTTTCACATCCATTTTTTGGGTTTTTTTT
TTCAGCCCATTCTGTGTAAAAGAGAAAAAAAGAAAAAACCCTCTAGGCCA
AACTCACTACACGCATGGGAGGCAGCATGCCTTTCTTAAATCGGGATCTC
ACATAGCCACTCTGGCTTCAAACTTCATCTAGCCAAGGAGGAATTTGAAC
TTCTGGTCATTGTGCCCCCACCTACTGAGTTGGAGTCATAGGTGAAATTC
ATGTTTACCATGATGCTGGGGATCAAAATCCGGGCTTTGTAAATATTACT
TTTTACCAGTCTAATCTAATGTTAAGTTATGCCTTCATCTTAAATTATAC
ATGCTTCTATGTCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_j23.g1 MSMg01no057_j23.g1 CHROMAT_FILE:
MSMg01no057_j23.g1 PHD_FILE: MSMg01no057_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:38 2005
         (444 letters)



>mm_chr18_32648050_32648894
          Length = 845

 Score =  752 bits (389), Expect = 0.0
 Identities = 431/445 (96%), Gaps = 1/445 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggatagccgtgagctacttgctgtgggtgctgggaactgaaactgggtcaactacttct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 695 aggatagccgtgagctacttgctgtgggtgctgggaactgaaactgggtcaactgcttct 636

                                                                       
Query: 61  gacctctgagctatccctccagtgcctggctttgcaggatcctgattggttttccttgtg 120
           ||||||||||| ||| |||  ||||||||||||||||||||||| |||||||||||||| 
Sbjct: 635 gacctctgagccatctctctggtgcctggctttgcaggatcctggttggttttccttgta 576

                                                                       
Query: 121 attccaggaccatctggtagcaattgtcaccaaaacaacagctccccactacttccacgt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 575 attccaggaccatctggtagcaattgtcaccaaaacaacagctccccactacttccacat 516

                                                                       
Query: 181 gcactatttatatataacgtgagaaaagggatggaggtagaggctgtctgattggtgaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gcactatttatatataacgtgagaaaagggatggaggtagaggctgtctgattggtgaca 456

                                                                       
Query: 241 gctgtttgttttgaacatgatttcatgaacgtgtttggctgaggcatcctattttctgcg 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gctgtttggtttgaacatgatttcatgaacgtgtttggctgaggcatcctattttctgcg 396

                                                                       
Query: 301 cagtttgttttcacatccattttttggg-ttttttttttcagcccattctgtgtaaaaga 359
           |||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||
Sbjct: 395 cagtttgttttcacatccattttttgggtttttttttttcagttcattctgtgtaaaaga 336

                                                                       
Query: 360 gaaaaaaagaaaaaaccctctaggccaaactcactacacgcatgggaggcagcatgcctt 419
           ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 335 gaaaaaaagaaaaaaccctctaggccaaacttagtacacgcatgggaggcagcatgcctt 276

                                    
Query: 420 tcttaaatcgggatctcacatagcc 444
           |||||||||||||||||||||||||
Sbjct: 275 tcttaaatcgggatctcacatagcc 251


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 845
Length adjustment: 10
Effective length of query: 434
Effective length of database: 835
Effective search space:   362390
Effective search space used:   362390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)