BAC Information

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BAC

Clone NameMSMg01-057P21
Chromosome18 (Build37)
Map Location 40,467,676 - 40,467,925
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057P21.T7 (MSMg01no057_p21.b1)MSMg01-057P21.TJ (MSMg01no057_p21.g1)
ACCAG285013AG285014
length722721
length of high quality
(start - end)
507 (38 - 544)338 (67 - 404)
definitionCHROMAT_FILE: MSMg01no057_p21.b1 PHD_FILE: MSMg01no057_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:08 2005CHROMAT_FILE: MSMg01no057_p21.g1 PHD_FILE: MSMg01no057_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:08 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TTGCGGCCGCTATACGACTCCTATATTCAGAGAATCCGCGGAATTCTCTG
AACTCACTCGTCCTTTCAGGTCCAATTTGCTCTGGCTCTGGCAACTGACT
GAACCAAACAATTAGGCTCATACCTAGAACTTTGGAAATGGTAATGGAGT
TGATAACACACCCTAACAGAAAGAGGAATGCTCCACTCACTAGTACACTT
TCACTAGAAGCCTCACCCTGTCAGCAGTTTAGGAATTTGTAAAGCCAATC
TGGACAATATTTAAATGGTTTGGAATTTCTACTTCATGTTTTTTTTTTTT
TTTTTAGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGCACATTG
GATTTTATAACAGACTTTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTAA
TACTTCTCCCGCGATTGCCGTAACTTGCAATCTAGTGGGCTTATGTTTGA
TTCCTGTAATCTTTTTTTCTAATTCTTTTTCCTTTTTATATTTTATTTTA
TTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTACTTTA
TCTTATTCCCAATCCTCTTGCAACTCGTTTTCAAATTCCCCTCTTTCCTC
CTCCCCATAACTTTTCTTGTATATAAAATTTTTTAAATATTGGCTGTATA
CCTTTTATCCTACCCTTTTTCCCCCCCCCCACCCTCTTTACACTTACAAA
ACCTCCCAGTTTTCCCCACCTG
CGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGCTTCACAATGATAGGAAGAGCCGACATCGAAG
GATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTAT
CCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGA
AGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCGTACTGAAAATCAAG
ATCAAGCGAGCTTTTGCCCTTCTGCTCCACGGGAGGTTTCTGTCCTCCCT
GAGCTCGCCTTAGGACATCTGCGTTACCGCTTGACAGGTGTACCGCCCCA
GTCAAACTCCCCACCTGGCACTGTCCCCGGAGCGGTTCGCGCCCGCCCGC
ACGCGTGTCACGCACGCTTGGCGCCATAAGCGAGAGTCCCTCGGGGCTCG
CCCCCCCCGCCTCACCGGGTCAGTGAAAAAACTATGACAGTATTGGTCTT
TCACCGGTGGCCCGCGAGGCCGTTGTGTCCCGACCTCGACGCGAGGACGG
GGCCGGCCGCCGTGGGTCTCCCACTTATTCTACATTTCTCATGTCTCCTT
CCCGTGCAATACTATCAGCAAGCTCACAAGGGTCTTCTTTTTTCGTTGAT
TCCGCTCCAGCCCGTTTTCTTGTTCGTGTGTTCTCTGCATAACACGTCGT
TATACATGCCAACCTTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_p21.b1 MSMg01no057_p21.b1 CHROMAT_FILE:
MSMg01no057_p21.b1 PHD_FILE: MSMg01no057_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:08 2005
         (507 letters)



>mm_chr18_40467473_40468378
          Length = 906

 Score =  364 bits (188), Expect = e-104
 Identities = 236/252 (93%), Gaps = 3/252 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattctctgaactcactcgtcctttcaggtcca-atttgctctggctctggcaactgac 62
           |||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||
Sbjct: 453 gaattctctgaactcact-gtcctttcaggtccacctttgctctggctctggcaactgac 395

                                                                       
Query: 63  tgaaccaaacaattaggctcatacctagaactttggaaatggtaatggagttgataacac 122
           |||||||||||| |||||||||||||||| ||| | |||||||||||||||||| |||||
Sbjct: 394 tgaaccaaacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacac 336

                                                                       
Query: 123 accctaacagaaagaggaatgctccactcactagtacactttcactagaagcctcaccct 182
           || |||||||||||||||| |||||||||||||| | |||||||||||||||||| ||||
Sbjct: 335 actctaacagaaagaggaaggctccactcactagaagactttcactagaagcctcgccct 276

                                                                       
Query: 183 gtcagcagtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttc 242
           | |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 275 gccagcagtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttc 216

                       
Query: 243 tacttcatgttt 254
           ||||||||||||
Sbjct: 215 tacttcatgttt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 906
Length adjustment: 10
Effective length of query: 497
Effective length of database: 896
Effective search space:   445312
Effective search space used:   445312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)