BAC Information

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BAC

Clone NameMSMg01-058D14
Chromosome18 (Build37)
Map Location 66,076,505 - 66,173,696
singlet/doubletdoublet
Overlap geneRax, Cplx4, Lman1
Upstream geneNedd4l, Alpk2, LOC667816, Malt1, LOC638570, LOC100042820, Zfp532, 5330437I02Rik, Sec11c, Grp
Downstream geneCcbe1, Pmaip1, LOC100042852, Mc4r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058D14.T7 (MSMg01no058_d14.b1)MSMg01-058D14.TJ (MSMg01no058_d14.g1)
ACCAG285190AG285191
length730713
length of high quality
(start - end)
184 (62 - 245)118 (67 - 184)
definitionCHROMAT_FILE: MSMg01no058_d14.b1 PHD_FILE: MSMg01no058_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:25 2005CHROMAT_FILE: MSMg01no058_d14.g1 PHD_FILE: MSMg01no058_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:25 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(66,076,505 - 66,076,688)(66,173,579 - 66,173,696)
sequence
GGCGCTATACACTCCTATTTCGAGAGGAGGCGCGGAATTCATAAATATTA
CACAGGAAGCGAGTGTGCAGGGATCACAGGGAAGGCGGTAGTCTCATCTC
CACATGGACCGCCAGCCTGGGCTGGGACAGAGTCCCAGATGTACCAGCCA
GCAAGCCATCCCTGAACTAACTGTACACGTGGGATTCCAGGAACCCTTTC
CAGAAATTACCCTGGAAAGGAACACAGGACTTACACTTCCTGACTTAGAA
ACCTACTATGAAACACCCATGCTGCTGAGTGAGCCCAGCGATGGAATTCT
AGATCAAGGTTTGTCAACAGGGCTCACCAGGCTAAGGCGCTTGCCTCCAA
TCCTATGATCCGAGTTCGATCCCCAGGACGTACAAGGTGGAACGTGAGAA
CATACCCCCTCATGTTGTCCTCTGATCTCCACATGTATGCCCACGCCTAC
CTATCATTCCACTACATACTAACTTATGCCTACTATGCTGATTCACATGT
AATTTTTCCCCCACAGTCCGGCACCGATTATCCCCCCACACCTGACCTTT
TGACATTAATCTTTTTTTTATTCAACGCCGAATTTACTACTTTTCCTCTA
ATCCCCCGGCGGCATTCATTGCCACGATAGTAAATTGCACACGGACCCAA
TGCCTAAATATAGAATTTACCGGTTTTTGTTTCACGATATCCTGATTATC
TTAATCTCCTAAAACGTTATCCCGTATTTT
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXAGTATTAATGAGCTTCCGCATATATTTAACACTTAAGC
ACATACTATGAAGCACACAAATATCCTAAAATTATTTGCTTATAGGAAGT
CTTTTCTCCCAGTATCTGCACCACTTGCAACCAGTGGACTTTAACTGGAC
TAATTGGCAAACATAGTTAGACTCCCCATACCTTGCTTTAATTAGCATAT
ACAACCAAACTCCCCCAGCAAGATATTGTCTCCTCTCATCTTCCCCGAAT
CATCACCATCAGTGAGGAGCCATGTATTCAAATGTCTGAGCCTATGGGGA
CATTTCTGATTCAAACCATCTCAATCACTGGACAGCATTATCGGTGATAC
ACACCCCCACGCATGGTGTTAGGTATAGATAGCAAAGAAAATTCATCCTA
AGTGAGGTAACTCAGACCTCCAAAAGACAAATGCCTGTATTCACTTACAT
GTCGATATTAGCTGTAAAGCGTATCATAAGCCGGCTACCCCCGCACTAAA
CCCATATTTGCCTGTTAATGGTCTTCCACGAAATCGCCGGCCCTTGGTGA
CTATGAATACAGAACCACCGCACCCCACTTACGACATGTCCCCTGCACCA
CCCTAAACGCTCTTTGACATCTTACTTACTATTGCACTCTCGCATCTTGA
AGCCCATCTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_d14.b1 MSMg01no058_d14.b1 CHROMAT_FILE:
MSMg01no058_d14.b1 PHD_FILE: MSMg01no058_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:25 2005
         (184 letters)



>mm_chr18_66076305_66076888
          Length = 584

 Score =  310 bits (160), Expect = 5e-89
 Identities = 178/184 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgtgcagggatcacagggaaggcggtagtctcatctccacatggaccgccagcctggg 60
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 201 agtgtgcagggatcacagggaaggcggtagtctcatctccacatggagagccagcctggg 260

                                                                       
Query: 61  ctgggacagagtcccagatgtaccagccagcaagccatccctgaactaactgtacacgtg 120
           ||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||
Sbjct: 261 ctgggacagagtcccagatgtaccagccaacaagccacccctgaactaactatacacgtg 320

                                                                       
Query: 121 ggattccaggaaccctttccagaaattaccctggaaaggaacacaggacttacacttcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 ggattccaggaaccctttccagaaattaccctggaaaggaacacaggacttacacttccc 380

               
Query: 181 gact 184
           ||||
Sbjct: 381 gact 384


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space:   101376
Effective search space used:   101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no058_d14.g1 MSMg01no058_d14.g1 CHROMAT_FILE:
MSMg01no058_d14.g1 PHD_FILE: MSMg01no058_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:25 2005
         (118 letters)



>mm_chr18_66173379_66173896
          Length = 518

 Score =  205 bits (106), Expect = 7e-58
 Identities = 115/118 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaatgagcttccgcatatatttaacacttaagcacatactatgaagcacacaaatatcc 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 318 ttaatgagcttccgcatatatttaacacttaagcacacactatgaagcacacaaatatcc 259

                                                                     
Query: 61  taaaattatttgcttataggaagtcttttctcccagtatctgcaccacttgcaaccag 118
           |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 258 taaaattatttgcttaaaggaagtcttttctcccagtatctgtaccacttgcaaccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 118
Length of database: 518
Length adjustment: 8
Effective length of query: 110
Effective length of database: 510
Effective search space:    56100
Effective search space used:    56100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)