BAC Information

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BAC

Clone NameMSMg01-058G17
Chromosome18 (Build37)
Map Location 34,241,148 - 34,241,377
singlet/doubletsinglet
Overlap genenone
Upstream geneCamk4, Stard4, EG433170, D0H4S114, ENSMUSG00000073610, LOC666281, LOC100041258, Epb4.1l4a, EG666296, Ppia-ps18_318.1
Downstream genePpia-ps18_319.1, LOC666313, Apc, Srp19, Reep5, Pkd2l2, 2610024E20Rik, Wnt8a, Nme5, 4933408B17Rik, Brd8, Kif20a, Cdc23, Gfra3, Cdc25c, LOC100041859, 2810012G03Rik, LOC100041879, LOC100041887, Jmjd1b, Reep2, Egr1, Etf1, Hspa9, LOC100041377, EG626954, LOC100041951
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058G17.T7 (MSMg01no058_g17.b1)MSMg01-058G17.TJ (MSMg01no058_g17.g1)
ACCAG285339AG285340
length715768
length of high quality
(start - end)
233 (60 - 292)68 (145 - 212)
definitionCHROMAT_FILE: MSMg01no058_g17.b1 PHD_FILE: MSMg01no058_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:39 2005CHROMAT_FILE: MSMg01no058_g17.g1 PHD_FILE: MSMg01no058_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGACGTAAACGACTCCTATATTCAAAAGAGGCGGGAATTCACGTTTA
TTCCACTTGAATGAACCAGCTTCTTGGATGGTGAAGCTGAGCTGGCACAA
ACTGAAAAGGAGGGAAAGTCATAAAAAGGGCCGATGAAGTCTGTCAGGGT
GACGTGCGCACACATCCTGTCACATACAAGTAATCTTATATATTAGCCTT
TGCTTTGTACAGTTGAGGGCCAAAGCCAAAACCACAGGCTCCTCCTTCTG
TTCTCAGCCTAGGATGCTGCTTGGCACCACACCACCGGGATAGTGAGCTG
AGCGATTCATTTTATTTCTCTGGGCATGCCTGGATCAAAGTGGGGAAAAA
AGTTGGGGTCATCGTAGCCGGGTTGCACTTAATTAGAACATCTGCCTCCA
TCGGTGTCCTAAGACCAGGTCTCCTGTCAAATCATCAACACTTTTTATAC
AGCTTCGCTGTTACCTGCGGGGCAGAAAGAGCCCCGCTGATCTCAGATGT
TCGATAGCCTATTTTTGATCTGAACGTATCACGATGGGAAAATAATCTCT
TGCCTTTCTTCTTGCCATATCCGCGGTCCGTACCCTTTTATCTCTTTCCC
AGATAGTAATAGGCGATTTGTCACCCCGCTTATATGTTTTCCAAAAACTG
ATTCACCCCTTCCCTTTGCACCAATGTCCTTTATTTATCATATCCCCGCC
ATTTTTTGGACTATT
NAACATGAAGAGGTAGGCCTGGCGGCGCCTGGCTTCAAATAGGGGTGAAC
TATAGAAGGTTTCAGTAATTCTGTGCAAGAAGTGGTGAAGCCAGAAGCTC
TACAAACTTCTGTGAGAACACCAAGACAAAATGATTATCATGAGAAACTG
ATAGTGACATTCCCAACGCCATTTTCAGTTCCAAAAACTTAAACACTTAG
AATCACACCCATAAAGGTGTGTGTGTGCGTGCGTGTGTGAGCGTGTGCGT
GCGTGACAGAGAGAGAGAGAGAGAGAGACAGAGACACACATCCACCTCCC
CCTCCCTTTCTCGTCTTTCTTCTCTCTTCCTTTTCCTCTCATTCTACCAC
TTCCATTCTTCCTTCTTCCCACCATTCTTCAATTTCTTCCTTATTTTCTT
CTCCTCCTTTCGTCCTCTCATCTTCTTTTCTCTTATACCTTCTATCCCCT
TTTTCCTCATTCCTTTTTCCCTTTTCCCTTCTGCCCTTTTCCCCTTCCTC
TCTTCCCTTCTATCCCTCTTCCTCCCTCCCCTCTCTTACTCTTCTATCCT
CTTATATCCCTAATCCTCATTCCCTCTTCTATCCCTTTTACCTCTATTTT
ACCCCATTACCATAACCATCAGCCCACCACTTTGCCTCTCATCCCCTCTC
CCTCTCCCTTCCCCTCTTCCCCCTCTTTCCCACTTTCCCCTTTCACTTAT
TTCATCAATCCATTCGCACTCCTTTCGCATTTCCTTATCTCCTTCCTGAT
CCTCTCCTCTTTCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_g17.b1 MSMg01no058_g17.b1 CHROMAT_FILE:
MSMg01no058_g17.b1 PHD_FILE: MSMg01no058_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:39 2005
         (233 letters)



>mm_chr18_34240948_34241580
          Length = 633

 Score =  406 bits (210), Expect = e-118
 Identities = 225/230 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgaaccagcttcttggatggtgaagctgagctggcacaaactgaaaaggagggaaagt 60
           |||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 430 aatgaaccagcttcttggttggtgaagctgagctggcgcaaactgaaaaagagggaaagt 371

                                                                       
Query: 61  cataaaaagggccgatgaagtctgtcagggtgacgtgcgcacacatcctgtcacatacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 cataaaaagggccgatgaagtctgtcagggtgacgtgcgcacacatcctgtcacatacaa 311

                                                                       
Query: 121 gtaatcttatatattagcctttgctttgtacagttgagggccaaagccaaaaccacaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 310 gtaatcttatatattagcctttgctttgtacagttgagggccaaagccaaagccacaggc 251

                                                             
Query: 181 tcctccttctgttctcagcctaggatgctgcttggcaccacaccaccggg 230
           ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tcctccttctggtctcagcctaggatgctgcttggcaccacaccaccggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)