BAC Information

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BAC

Clone NameMSMg01-058H05
Chromosome18 (Build37)
Map Location 58,281,772 - 58,282,013
singlet/doubletsinglet
Overlap geneFbn2
Upstream geneMegf10, LOC672445, Prrc1, 1700011I03Rik, 4930511M06Rik, 2210409D07Rik, Slc12a2, 9330166H04Rik
Downstream geneSlc27a6, Isoc1, Adamts19, A730017C20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058H05.T7 (MSMg01no058_h05.b1)MSMg01-058H05.TJ (MSMg01no058_h05.g1)
ACCAG285363AG285364
length716723
length of high quality
(start - end)
79 (172 - 250)242 (74 - 315)
definitionCHROMAT_FILE: MSMg01no058_h05.b1 PHD_FILE: MSMg01no058_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:42 2005CHROMAT_FILE: MSMg01no058_h05.g1 PHD_FILE: MSMg01no058_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAGATTCCCTCATGAGGAGTACAGGCAGGAAGCCTATCAGGAAG
CTGCTGGTTTCTTCTATCACCCCGGATTGCCTATTCAGGCGTAGCCCCAC
CCTCCTGGGCTTGGCCCTCTCAAGCCTGATATAGATGTCTCCTGAGAGGC
TCCACCAGTGCTGGACAAATACTGAGGATGCTTGCAGCCCACCATTGGAC
TGAGTACAGGCTGCCCAATGAAGGACCTAGAGAAAGGACCCAAGGAGCTG
AAGGGTTTTGCAGCCCCATATGATGAACAACAATATGAACTAACCAGTAC
CCCCATATTTTTTGTCCCCCCCCCCCCCCAACCAAAGAGTACACATGGTG
TGGACTCATGGCTCCAGCTGCATGAGAATAATTAGGATGGCTTAGTCAGC
CATCAATTGTTAACAGAGGTCCTTTTCTCCTGTGAAGGCTCTATACCCCA
TTGTACGGGAGCGCCCAGGCTCATTACCTGCCACTGATGCCCGTTGCCGA
CCACCGCGAACGATTATTAATATCGTTTTTTGCAATTCAAATGACCAACG
GCCTTCACTTCTTCCATGTCACTTAAGACTATTCCTATTTATCTCCAACC
TTCAACCTATCTATCTCTTCCTCAACTCCCGTATCACCTCCCACAACCAT
TCAAATGTTACGTCTG
CAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAAAATGACATAAGGCTCGTTAAATCT
TGCTATTAAAATGCTTTTAAAGAAAAGACTTATTAGTGACACTTCAACTC
TTTTTAAATGTGGCAAATGTTAGTTTCTATGTTAAAGATATTTTTTCCTG
GGTTTTTTAAAAAGAAAATTTTGATTAACACACTAGGTAAAATTAACTTA
GGATTTGTCTTCCTAAATTAGCATTAAATGGAATGGGGAAAGCTCTGGTA
TTTGAAGATTAAAAATGACTAGCTAAATGCCTCTGCCCCATGAAACTCTA
CCCTTGTTCCCGAGAGAGAAAGGATGTAGCTCGCTGACATTTTATAAGGT
GGTTTAGACTCATCGTACTTGCTGATTTTCTTACGATCCTGTAGGGAGAA
CTGTGTGAAACAGGACAAGGAAGCATGTTAGAGTCACCCACTCTCAGAGT
AAAGTTCATATAGCGTGCTGCCTCATGTTGAAGAAAATTCTGACGTCACC
CAGATCAGTGCCATTTGCATGTCCACCTTGTGTTTATCGAACAGTAAAAT
AGTACAGGGACTCTTATATTCCACGAACTCTTGATTTCTATCATTAAATA
ATTTTTCCATCCTACGAAACAATAACCCCTTTTGGGACTTTTTTAATACT
CCGAAATTTTTCTTTCCCTCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_h05.g1 MSMg01no058_h05.g1 CHROMAT_FILE:
MSMg01no058_h05.g1 PHD_FILE: MSMg01no058_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:42 2005
         (242 letters)



>mm_chr18_58281572_58282213
          Length = 642

 Score =  445 bits (230), Expect = e-129
 Identities = 239/242 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaatgacataaggctcgttaaatcttgctattaaaatgcttttaaagaaaagacttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaatgacataaggctcgttaaatcttgctattaaaatgcttttaaagaaaagacttat 260

                                                                       
Query: 61  tagtgacacttcaactctttttaaatgtggcaaatgttagtttctatgttaaagatattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagtgacacttcaactctttttaaatgtggcaaatgttagtttctatgttaaagatattt 320

                                                                       
Query: 121 tttcctgggttttttaaaaagaaaattttgattaacacactaggtaaaattaacttagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 tttcctgggttttttaaaaagaaaattttgattaacacactaggtaaaattaagttagga 380

                                                                       
Query: 181 tttgtcttcctaaattagcattaaatggaatggggaaagctctggtatttgaagattaaa 240
           | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 tctgtcttcctaaattagcattaaatggaatggggaaagctctggtttttgaagattaaa 440

             
Query: 241 aa 242
           ||
Sbjct: 441 aa 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)